FvH4_1g23211

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002856
Physical Location & Seq
Forward (+)
15047592 .. 15047929
338 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23211.t1

Sequence Viewer

Length: 240 bp
ATGGCTATGGTACCATGCAGGGCCCTTGTTCTTTCTGTTGTTCTCTTGGTTTTCTTCATATCAGTCGAAACTGCTAGAGCACGGAGTTTGAAAGAAGCAGCTAGTAGTGTTCATCATGGACAAGAAGGCAGGGATTATAAGTTTCAGTCAATCCAAGATGGTTCTCTTGACGATGGTACTGATGACCTAAATGCTATGGATTACACTCCAGCAAAGAGGAAACCACCAATTCATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.72

Weight (kDa)

6.24

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 11 - 79 3.3e-19 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
Acc65I GGTACC 1 cut(s) 10
AccB1I GGYRCC 1 cut(s) 10
AfaI GTAC 2 cut(s) 12, 178
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw21I GWGCWC 1 cut(s) 82
AoxI GGCC 1 cut(s) 21
ApaI GGGCCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 98
Asp718I GGTACC 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 21, 22
BaeGI GKGCMC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 110
BccI CCATC 2 cut(s) 152, 167
BfaI CTAG 2 cut(s) 75, 102
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmgT120I GGNCC 2 cut(s) 21, 22
BmiI GGNNCC 2 cut(s) 12, 23
BpmI CTGGAG 1 cut(s) 192
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 1 cut(s) 110
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 82
BsnI GGCC 1 cut(s) 23
Bsp120I GGGCCC 1 cut(s) 21
Bsp1286I GDGCHC 2 cut(s) 25, 82
BspANI GGCC 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 12, 23
BspT107I GGYRCC 1 cut(s) 10
BstSLI GKGCMC 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 110
BsuRI GGCC 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 21, 22
Csp6I GTAC 2 cut(s) 11, 177
CviAII CATG 2 cut(s) 15, 116
CviJI RGCY 3 cut(s) 5, 23, 101
CviKI_1 RGCY 3 cut(s) 5, 23, 101
CviQI GTAC 2 cut(s) 11, 177
Eco24I GRGCYC 1 cut(s) 25
EcoO109I RGGNCCY 2 cut(s) 21, 22
EcoT38I GRGCYC 1 cut(s) 25
FaeI CATG 2 cut(s) 18, 119
FaiI YATR 7 cut(s) 8, 16, 59, 117, 138, 197, 234
FatI CATG 2 cut(s) 14, 115
Fnu4HI GCNGC 1 cut(s) 99
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 2 cut(s) 75, 102
GluI GCNGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 23
Hin1II CATG 2 cut(s) 18, 119
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 18
Hsp92II CATG 2 cut(s) 18, 119
KpnI GGTACC 1 cut(s) 14
LpnPI CCDG 3 cut(s) 4, 115, 222
Lsp1109I GCAGC 1 cut(s) 110
MaeI CTAG 2 cut(s) 75, 102
MboII GAAGA 1 cut(s) 46
MhlI GDGCHC 2 cut(s) 25, 82
MluCI AATT 1 cut(s) 228
MnlI CCTC 1 cut(s) 210
NlaIII CATG 2 cut(s) 18, 119
NlaIV GGNNCC 2 cut(s) 12, 23
PkrI GCNGC 1 cut(s) 100
PsiI TTATAA 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 12, 23
PspOMI GGGCCC 1 cut(s) 21
PspPI GGNCC 2 cut(s) 21, 22
RsaI GTAC 2 cut(s) 12, 178
RsaNI GTAC 2 cut(s) 11, 177
SatI GCNGC 1 cut(s) 99
Sau96I GGNCC 2 cut(s) 21, 22
SduI GDGCHC 2 cut(s) 25, 82
SetI ASST 2 cut(s) 103, 189
Sse9I AATT 1 cut(s) 228
SspMI CTAG 2 cut(s) 75, 102
TaqI TCGA 1 cut(s) 66
TasI AATT 1 cut(s) 228
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 3 cut(s) 46, 101, 221
TspGWI ACGGA 1 cut(s) 97
XspI CTAG 2 cut(s) 75, 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.