Rorug06G0428700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002856
Physical Location & Seq
Forward (+)
56489938 .. 56492249
2312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0428700.1

Sequence Viewer

Length: 429 bp
ATGATCCGGTTCATCTTGTTACAGAACCGGCAGGGCAAGACCCGTTTAGCTAAGTACTACGTTCCTCTCGAGGATTCCGAGAAGCACAAGGTCGAGTACGAGGTTCATCGTTTGGTGGTCAACAGAGATCCCAAGTTCACCAATTTCGTTGAGTTCCGCACACACAAGGTGATCTACAGGCGATATGCCGGGTTGTTTTTCTCACTTTGTGTTGATATAACTGATAATGAGCTGGCCTATTTGGAATGCATTCATCTATTCGTCGAGATTTTGGATCATTTCTTCAGCAACGTTTGCGAGCTTGATTTGGTCTTCAACTTTCACAAGGTCTATCTGATACTTGACGAGTTCATTCTTGCTGGAGAGCTCCAAGAAACAAGCAAGAAGGCGATTATAGAGAGAATGGGGGAACTGGAAAAGCTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

17.05

Weight (kDa)

5.88

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 1 - 141 3.2e-54 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AclI AACGTT 1 cut(s) 291
AclWI GGATC 2 cut(s) 122, 282
AcuI CTGAAG 1 cut(s) 268
AdeI CACNNNGTG 2 cut(s) 169, 209
AfaI GTAC 2 cut(s) 56, 98
AgsI TTSAA 1 cut(s) 316
AluBI AGCT 5 cut(s) 50, 232, 301, 367, 421
AluI AGCT 5 cut(s) 50, 232, 301, 367, 421
Alw21I GWGCWC 1 cut(s) 369
AlwI GGATC 2 cut(s) 122, 282
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 1 cut(s) 234
Asp700I GAANNNNTTC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 190
AsuHPI GGTGA 2 cut(s) 130, 181
AvaI CYCGRG 1 cut(s) 68
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 369
BcnI CCSGG 1 cut(s) 190
BfmI CTRYAG 1 cut(s) 175
BmcAI AGTACT 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 6
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 417
BshFI GGCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 3 cut(s) 7, 28, 189
BsmI GAATGC 2 cut(s) 249, 251
BsnI GGCC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 4 cut(s) 3, 127, 171, 274
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 236
BspPI GGATC 2 cut(s) 122, 282
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 1 cut(s) 417
BssAI RCCGGY 1 cut(s) 27
BssMI GATC 4 cut(s) 3, 127, 171, 274
BstAPI GCANNNNNTGC 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 234, 299
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 4 cut(s) 6, 130, 174, 277
BstMBI GATC 4 cut(s) 3, 127, 171, 274
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 1 cut(s) 236
Cac8I GCNNGC 2 cut(s) 234, 299
Cfr10I RCCGGY 1 cut(s) 27
Csp6I GTAC 2 cut(s) 55, 97
CviJI RGCY 6 cut(s) 50, 232, 236, 301, 367, 421
CviKI_1 RGCY 6 cut(s) 50, 232, 236, 301, 367, 421
CviQI GTAC 2 cut(s) 55, 97
DdeI CTNAG 1 cut(s) 51
DpnI GATC 4 cut(s) 5, 129, 173, 276
DpnII GATC 4 cut(s) 3, 127, 171, 274
DraIII CACNNNGTG 2 cut(s) 169, 209
Ecl136II GAGCTC 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 369
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 268
Eco88I CYCGRG 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 367
EcoT22I ATGCAT 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 369
FaiI YATR 3 cut(s) 186, 218, 395
FriOI GRGCYC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 1 cut(s) 236
HapII CCGG 3 cut(s) 7, 28, 189
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 74
HpaII CCGG 3 cut(s) 7, 28, 189
HphI GGTGA 2 cut(s) 130, 181
Hpy166II GTNNAC 2 cut(s) 121, 138
Hpy188I TCNGA 2 cut(s) 79, 336
Hpy188III TCNNGA 2 cut(s) 68, 265
Hpy8I GTNNAC 2 cut(s) 121, 138
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 379
HpyCH4IV ACGT 2 cut(s) 60, 291
HpyCH4V TGCA 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 2 cut(s) 60, 291
Kzo9I GATC 4 cut(s) 3, 127, 171, 274
LmnI GCTCC 1 cut(s) 372
LpnPI CCDG 9 cut(s) 17, 20, 41, 163, 202, 218, 345, 398, 407
MaeII ACGT 2 cut(s) 60, 291
MaeIII GTNAC 1 cut(s) 18
MalI GATC 4 cut(s) 5, 129, 173, 276
MboI GATC 4 cut(s) 3, 127, 171, 274
MboII GAAGA 2 cut(s) 274, 304
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 1 cut(s) 142
MnlI CCTC 3 cut(s) 64, 75, 94
Mph1103I ATGCAT 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 249
MspI CCGG 3 cut(s) 7, 28, 189
MspR9I CCNGG 1 cut(s) 190
Mva1269I GAATGC 2 cut(s) 249, 251
MwoI GCNNNNNNNGC 1 cut(s) 294
NciI CCSGG 1 cut(s) 190
NdeII GATC 4 cut(s) 3, 127, 171, 274
NsiI ATGCAT 1 cut(s) 251
PaeR7I CTCGAG 1 cut(s) 68
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 75
PctI GAATGC 2 cut(s) 249, 251
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 369
Psp1406I AACGTT 1 cut(s) 291
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 2 cut(s) 56, 98
RsaNI GTAC 2 cut(s) 55, 97
SacI GAGCTC 1 cut(s) 369
Sau3AI GATC 4 cut(s) 3, 127, 171, 274
ScaI AGTACT 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 1 cut(s) 369
SfcI CTRYAG 1 cut(s) 175
Sfr274I CTCGAG 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 1 cut(s) 142
SsiI CCGC 1 cut(s) 157
SstI GAGCTC 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 188
TaiI ACGT 2 cut(s) 63, 294
TaqI TCGA 3 cut(s) 69, 93, 264
TasI AATT 1 cut(s) 142
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 1 cut(s) 74
TspDTI ATGAA 3 cut(s) 95, 242, 340
XhoI CTCGAG 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 249
ZrmI AGTACT 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.