Rw2G021460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002856
Physical Location & Seq
Forward (+)
29777850 .. 29779141
1292 bp
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UTR
Exon/CDS
Intron
Rw2G021460.1

Sequence Viewer

Length: 312 bp
ATGGATGTTCTGGCTGTTTTGGTCAGTCGGTACAAACTCGAATTCATCAGCCGGTCAAATCTTGTCAGGTCGAAATATCAAGACTTACTGGGCCTTTTTTCTGTTTTTCTCTTGGTTTTCTTCATCTCTGTCACTGCTAGAGCACGCAGTTTCAATGTAGCAGCTAGTAGTACTGGAAGTGATCATCATCGACAAAAACGCATGGAATATAAGTTCCAGTCAATCCAAGATGGTGTTCTTGACGATGATACTGAGGATTTAAACGCTATGGATTACACTCCAGCAAGGAGGAAACCACCAATTCATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.86

Weight (kDa)

9.1

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 35 - 103 1.5e-19 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 41
AfaI GTAC 2 cut(s) 32, 172
AgsI TTSAA 1 cut(s) 154
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 145
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 173
BccI CCATC 1 cut(s) 224
BclI TGATCA 1 cut(s) 181
BfaI CTAG 2 cut(s) 138, 165
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
BmcAI AGTACT 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 91
BmrI ACTGGG 1 cut(s) 98
BmuI ACTGGG 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 186
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 3 cut(s) 93, 178, 217
Bse8I GATNNNNATC 1 cut(s) 186
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 186
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 3 cut(s) 93, 178, 217
BseXI GCAGC 1 cut(s) 173
BshFI GGCC 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 52
BsnI GGCC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 181
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 3 cut(s) 93, 178, 217
BssAI RCCGGY 1 cut(s) 51
BssMI GATC 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 173
BsuRI GGCC 1 cut(s) 93
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 31, 171
CviAII CATG 1 cut(s) 202
CviJI RGCY 4 cut(s) 14, 51, 93, 164
CviKI_1 RGCY 4 cut(s) 14, 51, 93, 164
CviQI GTAC 2 cut(s) 31, 171
DdeI CTNAG 1 cut(s) 252
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
DraI TTTAAA 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 41
FaeI CATG 1 cut(s) 205
FaiI YATR 4 cut(s) 203, 210, 269, 306
FatI CATG 1 cut(s) 201
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 2 cut(s) 138, 165
GluI GCNGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 1 cut(s) 93
HapII CCGG 1 cut(s) 52
Hin1II CATG 1 cut(s) 205
HpaII CCGG 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 80, 239
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 1 cut(s) 181
LpnPI CCDG 6 cut(s) 52, 65, 74, 159, 230, 294
Lsp1109I GCAGC 1 cut(s) 173
MaeI CTAG 2 cut(s) 138, 165
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 2 cut(s) 41, 300
MnlI CCTC 2 cut(s) 247, 282
MseI TTAA 1 cut(s) 260
MspI CCGG 1 cut(s) 52
NdeII GATC 1 cut(s) 181
NlaIII CATG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 91
RsaI GTAC 2 cut(s) 32, 172
RsaNI GTAC 2 cut(s) 31, 171
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 91
ScaI AGTACT 1 cut(s) 172
SduI GDGCHC 1 cut(s) 145
SetI ASST 2 cut(s) 71, 166
Sse9I AATT 2 cut(s) 41, 300
SspMI CTAG 2 cut(s) 138, 165
TaqI TCGA 3 cut(s) 39, 71, 190
TasI AATT 2 cut(s) 41, 300
TatI WGTACW 1 cut(s) 170
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 34, 112, 293
TspRI CASTG 1 cut(s) 139
XapI RAATTY 1 cut(s) 41
XspI CTAG 2 cut(s) 138, 165
ZrmI AGTACT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.