FvH4_1g23250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002856
Physical Location & Seq
Forward (+)
15112694 .. 15113495
802 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23250.t1

Sequence Viewer

Length: 255 bp
ATGGCAGCTGTGATACGATACAAGCACCTTGTTCTTGTGGCTTTAATCTTGCTTTGCTTCATCACTATCACAACTACTGAAGCAGCACGAAGTTTGGGAGTGGCGCGGAGTAACTATAGATCTGATGAGAAGAGCTGTGATGAAACCTTGAAACATGGGATCAAAGAAGATGATGGAGTAGTACCAGATGAGAGTACTGATTTACTGGCTATGGATTACAGTCCAGCAAGTAAAAAGCCTCCAATCCATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.24

Weight (kDa)

5.83

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 11 - 84 6.5e-19 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 106
AciI CCGC 1 cut(s) 106
AclWI GGATC 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 183, 196
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 2 cut(s) 8, 135
AluI AGCT 2 cut(s) 8, 135
AlwI GGATC 1 cut(s) 167
ApeKI GCWGC 2 cut(s) 5, 83
AspLEI GCGC 1 cut(s) 106
BbvI GCAGC 2 cut(s) 17, 95
BccI CCATC 1 cut(s) 167
BfaI CTAG 1 cut(s) 253
BfmI CTRYAG 1 cut(s) 115
BglII AGATCT 1 cut(s) 119
BisI GCNGC 2 cut(s) 6, 84
BlsI GCNGC 2 cut(s) 7, 85
BmcAI AGTACT 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 210
BseXI GCAGC 2 cut(s) 17, 95
Bsh1236I CGCG 1 cut(s) 106
Bsp143I GATC 2 cut(s) 119, 159
BspACI CCGC 1 cut(s) 106
BspFNI CGCG 1 cut(s) 106
BspPI GGATC 1 cut(s) 167
BspQI GCTCTTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 210
BssMI GATC 2 cut(s) 119, 159
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 125
BstFNI CGCG 1 cut(s) 106
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 2 cut(s) 122, 162
BstMBI GATC 2 cut(s) 119, 159
BstSFI CTRYAG 1 cut(s) 115
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 17, 95
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
CfoI GCGC 1 cut(s) 106
Csp6I GTAC 2 cut(s) 182, 195
CviAII CATG 1 cut(s) 155
CviJI RGCY 5 cut(s) 8, 41, 135, 209, 238
CviKI_1 RGCY 5 cut(s) 8, 41, 135, 209, 238
CviQI GTAC 2 cut(s) 182, 195
DpnI GATC 2 cut(s) 121, 161
DpnII GATC 2 cut(s) 119, 159
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 99
FaeI CATG 1 cut(s) 158
FaiI YATR 4 cut(s) 117, 156, 212, 249
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 6, 84
Fsp4HI GCNGC 2 cut(s) 6, 84
FspBI CTAG 1 cut(s) 253
GlaI GCGC 1 cut(s) 105
GluI GCNGC 2 cut(s) 6, 84
HhaI GCGC 1 cut(s) 106
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 221
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 1 cut(s) 104
Kzo9I GATC 2 cut(s) 119, 159
LguI GCTCTTC 1 cut(s) 125
LpnPI CCDG 3 cut(s) 191, 198, 237
Lsp1109I GCAGC 2 cut(s) 17, 95
MaeI CTAG 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 121, 161
MboI GATC 2 cut(s) 119, 159
MboII GAAGA 2 cut(s) 142, 179
MflI RGATCY 1 cut(s) 119
MnlI CCTC 1 cut(s) 249
MseI TTAA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 8
MvnI CGCG 1 cut(s) 106
NdeII GATC 2 cut(s) 119, 159
NlaIII CATG 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 125
PkrI GCNGC 2 cut(s) 7, 85
PsuI RGATCY 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 2 cut(s) 183, 196
RsaNI GTAC 2 cut(s) 182, 195
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 2 cut(s) 6, 84
Sau3AI GATC 2 cut(s) 119, 159
ScaI AGTACT 1 cut(s) 196
SetI ASST 4 cut(s) 10, 30, 137, 149
SfcI CTRYAG 1 cut(s) 115
SsiI CCGC 1 cut(s) 106
SspMI CTAG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 221
TatI WGTACW 1 cut(s) 194
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TseI GCWGC 2 cut(s) 5, 83
TspDTI ATGAA 2 cut(s) 49, 156
XspI CTAG 1 cut(s) 253
ZrmI AGTACT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.