Prupe.5G236600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0002856
Physical Location & Seq
Reverse (-)
17899868 .. 17900902
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G236600.1

Sequence Viewer

Length: 429 bp
ATGGCTTTTGGGATGAATAACAAGCTGCGCATTAATACTGCTCTGGTTGCATTTATGCTGCTGCTGCTGCTGCTATTCATCGTCGTATACATAGCTGATGATGGTAAACATTATATATGGTTAACTCTCAAATTAATACTATACTTGTTGATCATGTTCATGATATATCTAATTGTCAAAAACTTCTTTAAATTAAGTCCTTCAATTATTTATAACATGACATTCTTTTTCTTCTTCTTGTCACTCACGCCTATATATATAGGTACAGGAACAGGAGGAGTTAATGACAAAGTTGCAAGTCTTGTTGAAGATGAAGCCGCCAAGACCAAAACTACCAAAACCAAAACAAGGCAAGAGAGGGGAGAAGACTTGGACTTGCTGGTCATGGATTACACCCCAGCTAGAAAGAAGTCCCCCATTCATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.33

Weight (kDa)

9.43

Isoelectric Point (pI)

24.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AasI GACNNNNNNGTC 1 cut(s) 380
Acc16I TGCGCA 1 cut(s) 29
AccI GTMKAC 1 cut(s) 87
AciI CCGC 1 cut(s) 318
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 348
AgsI TTSAA 2 cut(s) 204, 308
AluBI AGCT 3 cut(s) 25, 95, 401
AluI AGCT 3 cut(s) 25, 95, 401
ApeKI GCWGC 6 cut(s) 25, 58, 61, 64, 67, 70
AseI ATTAAT 2 cut(s) 33, 134
AspLEI GCGC 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 6 cut(s) 12, 45, 48, 51, 54, 57
BccI CCATC 1 cut(s) 95
BclI TGATCA 1 cut(s) 150
BfaI CTAG 1 cut(s) 402
BisI GCNGC 7 cut(s) 26, 59, 62, 65, 68, 71, 318
BlsI GCNGC 7 cut(s) 27, 60, 63, 66, 69, 72, 319
BpiI GAAGAC 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 348
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 348
BseRI GAGGAG 1 cut(s) 291
BseXI GCAGC 6 cut(s) 12, 45, 48, 51, 54, 57
BseYI CCCAGC 1 cut(s) 397
BslFI GGGAC 1 cut(s) 397
BslI CCNNNNNNNGG 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 397
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 1 cut(s) 318
BspHI TCATGA 1 cut(s) 159
BssMI GATC 1 cut(s) 150
BssNAI GTATAC 1 cut(s) 88
Bst1107I GTATAC 1 cut(s) 88
BstF5I GGATG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 1 cut(s) 153
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 4 cut(s) 47, 64, 67, 70
BstV1I GCAGC 6 cut(s) 12, 45, 48, 51, 54, 57
BstV2I GAAGAC 1 cut(s) 372
BstZ17I GTATAC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 18
CciI TCATGA 1 cut(s) 159
CfoI GCGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 264
CviAII CATG 4 cut(s) 154, 160, 217, 385
CviJI RGCY 5 cut(s) 5, 25, 95, 317, 401
CviKI_1 RGCY 5 cut(s) 5, 25, 95, 317, 401
CviQI GTAC 1 cut(s) 264
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
DraI TTTAAA 1 cut(s) 190
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
FaeI CATG 4 cut(s) 157, 163, 220, 388
FaqI GGGAC 1 cut(s) 397
FatI CATG 4 cut(s) 153, 159, 216, 384
FbaI TGATCA 1 cut(s) 150
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 7 cut(s) 26, 59, 62, 65, 68, 71, 318
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 7 cut(s) 26, 59, 62, 65, 68, 71, 318
FspBI CTAG 1 cut(s) 402
FspI TGCGCA 1 cut(s) 29
GlaI GCGC 1 cut(s) 29
GluI GCNGC 7 cut(s) 26, 59, 62, 65, 68, 71, 318
GsaI CCCAGC 1 cut(s) 401
HhaI GCGC 1 cut(s) 30
Hin1II CATG 4 cut(s) 157, 163, 220, 388
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HpaI GTTAAC 1 cut(s) 123
Hpy166II GTNNAC 3 cut(s) 88, 107, 123
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 3 cut(s) 88, 107, 123
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 210
HpyCH4V TGCA 2 cut(s) 50, 296
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 64, 67, 70
Hsp92II CATG 4 cut(s) 157, 163, 220, 388
HspAI GCGC 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 150
KspAI GTTAAC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 150
LpnPI CCDG 5 cut(s) 29, 252, 258, 365, 411
Lsp1109I GCAGC 6 cut(s) 12, 45, 48, 51, 54, 57
MaeI CTAG 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 240
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 4 cut(s) 223, 226, 320, 377
MluCI AATT 4 cut(s) 131, 171, 191, 204
MnlI CCTC 2 cut(s) 269, 351
MseI TTAA 6 cut(s) 33, 122, 134, 189, 194, 282
MslI CAYNNNNRTG 1 cut(s) 158
MwoI GCNNNNNNNGC 4 cut(s) 47, 64, 67, 70
NdeII GATC 1 cut(s) 150
NlaIII CATG 4 cut(s) 157, 163, 220, 388
NmuCI GTSAC 1 cut(s) 240
NsbI TGCGCA 1 cut(s) 29
PagI TCATGA 1 cut(s) 159
PkrI GCNGC 7 cut(s) 27, 60, 63, 66, 69, 72, 319
PshBI ATTAAT 2 cut(s) 33, 134
PsiI TTATAA 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 397
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 6 cut(s) 33, 122, 134, 189, 194, 282
SatI GCNGC 7 cut(s) 26, 59, 62, 65, 68, 71, 318
Sau3AI GATC 1 cut(s) 150
SetI ASST 4 cut(s) 27, 97, 265, 403
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 4 cut(s) 131, 171, 191, 204
SsiI CCGC 1 cut(s) 318
SspMI CTAG 1 cut(s) 402
TasI AATT 4 cut(s) 131, 171, 191, 204
TauI GCSGC 1 cut(s) 320
Tru1I TTAA 6 cut(s) 33, 122, 134, 189, 194, 282
Tru9I TTAA 6 cut(s) 33, 122, 134, 189, 194, 282
TseFI GTSAC 1 cut(s) 240
TseI GCWGC 6 cut(s) 25, 58, 61, 64, 67, 70
Tsp45I GTSAC 1 cut(s) 240
TspDTI ATGAA 5 cut(s) 29, 67, 148, 327, 410
VspI ATTAAT 2 cut(s) 33, 134
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.