Rorug02G0215900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002856
Physical Location & Seq
Forward (+)
20679252 .. 20679665
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0215900.1

Sequence Viewer

Length: 231 bp
ATGTTGGTGGTAGCTCCGTTGCAGGGCAACTTCCATCTCCAGAAGAGTCGCTGCTCTGCTTGTGCATACCCAGCTGTCCGCACCAGGAAATTCAATTGGAGTGTGAAGGCCATCAGGAGGAAGACCACCGGGACTGGAAGGATGTGGTATCTGTGGAATGTCCCACGCAGGTTTAAGAGCGGTTTCAGGGAAGGTGCTGATCCTTTTAGTTTTATACTCCTTGATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.84

Weight (kDa)

11.26

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37e PF01907 11 - 37 3.1e-10 Ribosomal protein L37e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 159
AccBSI CCGCTC 1 cut(s) 180
AciI CCGC 2 cut(s) 79, 180
AclWI GGATC 1 cut(s) 194
AcsI RAATTY 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 23, 117
AgsI TTSAA 1 cut(s) 94
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 2 cut(s) 14, 74
AluI AGCT 2 cut(s) 14, 74
AlwI GGATC 1 cut(s) 194
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 38
BccI CCATC 2 cut(s) 42, 119
BciT130I CCWGG 1 cut(s) 85
BcnI CCSGG 1 cut(s) 130
BfuAI ACCTGC 1 cut(s) 159
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
Bme1390I CCNGG 2 cut(s) 85, 130
BmrFI CCNGG 2 cut(s) 85, 130
BpiI GAAGAC 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 117
Bse1I ACTGG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 23, 117
BseNI ACTGG 1 cut(s) 139
BseXI GCAGC 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 70
BshFI GGCC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 2 cut(s) 145, 146
BslI CCNNNNNNNGG 2 cut(s) 23, 117
BsmFI GGGAC 2 cut(s) 145, 146
BsnI GGCC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 2 cut(s) 79, 180
BspANI GGCC 1 cut(s) 110
BspMI ACCTGC 1 cut(s) 159
BspPI GGATC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 139
BssMI GATC 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 38
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 2 cut(s) 83, 128
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 147
BveI ACCTGC 1 cut(s) 159
CviJI RGCY 3 cut(s) 14, 74, 110
CviKI_1 RGCY 3 cut(s) 14, 74, 110
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 83
FaiI YATR 3 cut(s) 67, 215, 229
FaqI GGGAC 2 cut(s) 145, 146
Fnu4HI GCNGC 1 cut(s) 52
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 52
GsaI CCCAGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 23
HaeIII GGCC 1 cut(s) 110
HapII CCGG 1 cut(s) 129
HinfI GANTC 1 cut(s) 46
HpaII CCGG 1 cut(s) 129
Hpy188III TCNNGA 2 cut(s) 40, 115
HpyAV CCTTC 3 cut(s) 100, 132, 185
HpyCH4V TGCA 2 cut(s) 22, 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 1 cut(s) 38
MalI GATC 1 cut(s) 201
MbiI CCGCTC 1 cut(s) 180
MboI GATC 1 cut(s) 199
MboII GAAGA 2 cut(s) 55, 133
MfeI CAATTG 1 cut(s) 94
MluCI AATT 2 cut(s) 89, 94
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 1 cut(s) 111
MseI TTAA 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 2 cut(s) 85, 130
MunI CAATTG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 71
NciI CCSGG 1 cut(s) 130
NdeII GATC 1 cut(s) 199
PkrI GCNGC 1 cut(s) 53
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 70
PspGI CCWGG 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 1 cut(s) 199
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 85, 130
SetI ASST 4 cut(s) 16, 76, 173, 196
Sse9I AATT 2 cut(s) 89, 94
SsiI CCGC 2 cut(s) 79, 180
StyD4I CCNGG 2 cut(s) 83, 128
TasI AATT 2 cut(s) 89, 94
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseI GCWGC 1 cut(s) 51
TspGWI ACGGA 1 cut(s) 6
XapI RAATTY 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.