RLG00000005484

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002856
Physical Location & Seq
Reverse (-)
68005695 .. 68006153
459 bp
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UTR
Exon/CDS
Intron
RLM00000005484

Sequence Viewer

Length: 339 bp
ATGGCTTTCTTAACGGTGAACAAGCGCAATAACATCTCTCTTCAGCTCGCATTTCTGCTACTCTTCCTCGTCTCGGCACTATTACTCGTAGCTCGTGCACGAGATATCAGCAGCAGCAGCAGAAGGGTCGATGTCGTCGTGAAGAAAGGTGCTGCTGCAAGTAGTGTGCTTCAAGATGCAGAACCAGTCGAGAGCAGTGATATCAGCAGCAGCAGAAGCAGCCACGCATTTGAAACAAAGCACGAACAAGAGAATCTGACTGGTACAGAAGGCATAGATGACGATTTACTGGTCGGAGATTACACCCCAACTAGAAAGAAGTCTCCCATTCATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.2

Weight (kDa)

6.27

Isoelectric Point (pI)

65.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 72 - 112 2.9e-06 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 173, 233
AluBI AGCT 2 cut(s) 46, 92
AluI AGCT 2 cut(s) 46, 92
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 2 cut(s) 76, 327
Alw44I GTGCAC 1 cut(s) 96
ApaLI GTGCAC 1 cut(s) 96
ApeKI GCWGC 8 cut(s) 111, 114, 117, 152, 155, 207, 210, 219
AspLEI GCGC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 100
BauI CACGAG 2 cut(s) 93, 99
Bbv12I GWGCWC 1 cut(s) 100
BbvI GCAGC 8 cut(s) 123, 126, 129, 139, 142, 219, 222, 231
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BcoDI GTCTC 2 cut(s) 76, 327
BfaI CTAG 1 cut(s) 312
BisI GCNGC 8 cut(s) 112, 115, 118, 153, 156, 208, 211, 220
BlsI GCNGC 8 cut(s) 113, 116, 119, 154, 157, 209, 212, 221
BmsI GCATC 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 3 cut(s) 185, 265, 294
BseLI CCNNNNNNNGG 1 cut(s) 73
BseNI ACTGG 3 cut(s) 185, 265, 294
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 8 cut(s) 123, 126, 129, 139, 142, 219, 222, 231
BsiHKAI GWGCWC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 76, 327
BsmBI CGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 100
BsrI ACTGG 3 cut(s) 185, 265, 294
BssSI CACGAG 2 cut(s) 93, 99
Bst2BI CACGAG 2 cut(s) 93, 99
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 2 cut(s) 45, 68
BstC8I GCNNGC 1 cut(s) 48
BstHHI GCGC 1 cut(s) 27
BstMAI GTCTC 2 cut(s) 76, 327
BstMWI GCNNNNNNNGC 3 cut(s) 117, 216, 219
BstSLI GKGCMC 1 cut(s) 100
BstV1I GCAGC 8 cut(s) 123, 126, 129, 139, 142, 219, 222, 231
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 48
CfoI GCGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 264
CviJI RGCY 4 cut(s) 5, 46, 92, 222
CviKI_1 RGCY 4 cut(s) 5, 46, 92, 222
CviQI GTAC 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 45, 68
EarI CTCTTC 2 cut(s) 45, 68
Eco32I GATATC 2 cut(s) 106, 202
Eco57I CTGAAG 1 cut(s) 26
EcoRV GATATC 2 cut(s) 106, 202
Esp3I CGTCTC 1 cut(s) 76
FaiI YATR 2 cut(s) 275, 333
Fnu4HI GCNGC 8 cut(s) 112, 115, 118, 153, 156, 208, 211, 220
Fsp4HI GCNGC 8 cut(s) 112, 115, 118, 153, 156, 208, 211, 220
FspBI CTAG 1 cut(s) 312
GlaI GCGC 1 cut(s) 26
GluI GCNGC 8 cut(s) 112, 115, 118, 153, 156, 208, 211, 220
HhaI GCGC 1 cut(s) 27
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 1 cut(s) 253
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 19, 98
Hpy188I TCNGA 2 cut(s) 258, 296
Hpy188III TCNNGA 3 cut(s) 139, 173, 190
Hpy8I GTNNAC 2 cut(s) 19, 98
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 117, 263
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 3 cut(s) 98, 158, 179
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 216, 219
HspAI GCGC 1 cut(s) 25
LpnPI CCDG 3 cut(s) 198, 246, 275
Lsp1109I GCAGC 8 cut(s) 123, 126, 129, 139, 142, 219, 222, 231
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 312
MboII GAAGA 3 cut(s) 32, 55, 154
MhlI GDGCHC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 1 cut(s) 77
MseI TTAA 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 117, 216, 219
NmeAIII GCCGAG 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 8 cut(s) 113, 116, 119, 154, 157, 209, 212, 221
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 8 cut(s) 112, 115, 118, 153, 156, 208, 211, 220
SduI GDGCHC 1 cut(s) 100
SetI ASST 3 cut(s) 48, 94, 151
SfaNI GCATC 1 cut(s) 166
SspMI CTAG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 2 cut(s) 129, 189
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 202
TseI GCWGC 8 cut(s) 111, 114, 117, 152, 155, 207, 210, 219
TspDTI ATGAA 1 cut(s) 320
TspRI CASTG 1 cut(s) 202
VneI GTGCAC 1 cut(s) 96
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.