RLG00000005320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002856
Physical Location & Seq
Reverse (-)
66759336 .. 66759789
454 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005320

Sequence Viewer

Length: 321 bp
ATGTCTTTCTTGACGGTGAACAAGCGCAATAACATCTCTCTTCAGCTCGCATTTACGCTACTCTTCCTCGTCTCGGCACTATTATTACTCGTAGCTCATGCACGAGATATCAGCAGCAGCAGCAGCAGAAGGGTCGATGGCGTCGTGAAGCTTCAAGATGCAGAACTAGTCGAGAGCAGTGATAGCAGCAGCAGCCGAAGCAGCCACGCATTTGAAACAATGCACGAACAAGAGAATCTGAGTGGTACAGAAGGCACAGATGACGACTTACTGATCGAGGATTACACCCCAGCTAGAAAGAAGTCTCCCATTCATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.69

Weight (kDa)

5.21

Isoelectric Point (pI)

86.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 67 - 106 6.6e-07 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 26
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 155, 215
AhlI ACTAGT 1 cut(s) 166
AluBI AGCT 4 cut(s) 46, 95, 151, 293
AluI AGCT 4 cut(s) 46, 95, 151, 293
Alw26I GTCTC 2 cut(s) 76, 309
ApeKI GCWGC 8 cut(s) 114, 117, 120, 123, 186, 189, 192, 201
AspLEI GCGC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 28
BauI CACGAG 1 cut(s) 102
BbvI GCAGC 8 cut(s) 126, 129, 132, 135, 198, 201, 204, 213
BccI CCATC 1 cut(s) 131
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcoDI GTCTC 2 cut(s) 76, 309
BcuI ACTAGT 1 cut(s) 166
BfaI CTAG 2 cut(s) 167, 294
BisI GCNGC 8 cut(s) 115, 118, 121, 124, 187, 190, 193, 202
BlsI GCNGC 8 cut(s) 116, 119, 122, 125, 188, 191, 194, 203
BmsI GCATC 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 230
BseXI GCAGC 8 cut(s) 126, 129, 132, 135, 198, 201, 204, 213
BseYI CCCAGC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 76, 309
BsmBI CGTCTC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 231
BssMI GATC 1 cut(s) 273
BssNI GRCGYC 1 cut(s) 141
BssSI CACGAG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 2 cut(s) 45, 68
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 239
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 1 cut(s) 276
BstMAI GTCTC 2 cut(s) 76, 309
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 6 cut(s) 120, 123, 183, 192, 198, 201
BstV1I GCAGC 8 cut(s) 126, 129, 132, 135, 198, 201, 204, 213
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 48
CfoI GCGC 1 cut(s) 27
CseI GACGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 246
CviAII CATG 1 cut(s) 98
CviJI RGCY 6 cut(s) 46, 95, 151, 195, 204, 293
CviKI_1 RGCY 6 cut(s) 46, 95, 151, 195, 204, 293
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 239
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
Eam1104I CTCTTC 2 cut(s) 45, 68
EarI CTCTTC 2 cut(s) 45, 68
Eco32I GATATC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 26
EcoRV GATATC 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 1 cut(s) 101
FaiI YATR 2 cut(s) 99, 315
FatI CATG 1 cut(s) 97
Fnu4HI GCNGC 8 cut(s) 115, 118, 121, 124, 187, 190, 193, 202
Fsp4HI GCNGC 8 cut(s) 115, 118, 121, 124, 187, 190, 193, 202
FspBI CTAG 2 cut(s) 167, 294
GlaI GCGC 1 cut(s) 26
GluI GCNGC 8 cut(s) 115, 118, 121, 124, 187, 190, 193, 202
GsaI CCCAGC 1 cut(s) 293
HgaI GACGC 1 cut(s) 130
HhaI GCGC 1 cut(s) 27
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 1 cut(s) 235
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 4 cut(s) 10, 145, 155, 172
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 123, 245
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 3 cut(s) 101, 161, 223
HpyF10VI GCNNNNNNNGC 6 cut(s) 120, 123, 183, 192, 198, 201
HpyF3I CTNAG 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 273
LpnPI CCDG 1 cut(s) 303
Lsp1109I GCAGC 8 cut(s) 126, 129, 132, 135, 198, 201, 204, 213
LweI GCATC 1 cut(s) 148
MaeI CTAG 2 cut(s) 167, 294
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 2 cut(s) 32, 55
MnlI CCTC 2 cut(s) 77, 271
MwoI GCNNNNNNNGC 6 cut(s) 120, 123, 183, 192, 198, 201
NdeII GATC 1 cut(s) 273
NlaIII CATG 1 cut(s) 101
NmeAIII GCCGAG 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 1 cut(s) 235
PkrI GCNGC 8 cut(s) 116, 119, 122, 125, 188, 191, 194, 203
PspFI CCCAGC 1 cut(s) 289
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SatI GCNGC 8 cut(s) 115, 118, 121, 124, 187, 190, 193, 202
Sau3AI GATC 1 cut(s) 273
SetI ASST 4 cut(s) 48, 97, 153, 295
SfaNI GCATC 1 cut(s) 148
SpeI ACTAGT 1 cut(s) 166
SspMI CTAG 2 cut(s) 167, 294
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 3 cut(s) 135, 171, 276
TfiI GAWTC 1 cut(s) 235
TscAI CASTG 1 cut(s) 184
TseI GCWGC 8 cut(s) 114, 117, 120, 123, 186, 189, 192, 201
TspDTI ATGAA 1 cut(s) 302
TspRI CASTG 1 cut(s) 184
XspI CTAG 2 cut(s) 167, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.