Rh2BG284800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002856
Physical Location & Seq
Forward (+)
31263272 .. 31263631
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG284800.1

Sequence Viewer

Length: 252 bp
ATGGCAGCTGTGATACGATACAAGCACCTTGTTCTCGTGGCTTTCATCTTTCTTTGGTTCATCACTATGACAACTACTGAAGCACGAAGTTTGGGAGTGGCGCCAAGTAATTATAGATCTGATGAGAAGAACCATGATGACAACTTGAAACATGGGCTCAAAGAAGATGATGGAGTAGTGCCAGATGAGAGTAATGATTTACTGGCTATGGATTACACTCCAGCAAGTAAAAAGCCTCCAATCCACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.37

Weight (kDa)

5.69

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 11 - 83 8.5e-20 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 101
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 159
BauI CACGAG 1 cut(s) 35
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 164
BfoI RGCGCY 1 cut(s) 104
BglII AGATCT 1 cut(s) 116
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 100
BsrI ACTGG 1 cut(s) 207
BssMI GATC 1 cut(s) 116
BssNI GRCGYC 1 cut(s) 101
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
CfoI GCGC 1 cut(s) 103
CviAII CATG 2 cut(s) 134, 152
CviJI RGCY 5 cut(s) 8, 41, 157, 206, 235
CviKI_1 RGCY 5 cut(s) 8, 41, 157, 206, 235
DinI GGCGCC 1 cut(s) 102
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 159
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
FaeI CATG 2 cut(s) 137, 155
FaiI YATR 5 cut(s) 68, 114, 135, 153, 209
FatI CATG 2 cut(s) 133, 151
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 6
GlaI GCGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 104
HhaI GCGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 2 cut(s) 137, 155
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
Hpy188I TCNGA 1 cut(s) 121
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 2 cut(s) 137, 155
HspAI GCGC 1 cut(s) 101
KasI GGCGCC 1 cut(s) 100
Kzo9I GATC 1 cut(s) 116
LpnPI CCDG 3 cut(s) 188, 195, 234
Lsp1109I GCAGC 1 cut(s) 17
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 2 cut(s) 139, 176
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 2 cut(s) 109, 247
Mly113I GGCGCC 1 cut(s) 101
MnlI CCTC 1 cut(s) 246
MseI TTAA 1 cut(s) 250
MslI CAYNNNNRTG 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 8
NarI GGCGCC 1 cut(s) 101
NdeII GATC 1 cut(s) 116
NlaIII CATG 2 cut(s) 137, 155
NlaIV GGNNCC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 7
PluTI GGCGCC 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 1 cut(s) 250
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 116
SduI GDGCHC 1 cut(s) 159
SetI ASST 2 cut(s) 10, 30
SfoI GGCGCC 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 65
Sse9I AATT 2 cut(s) 109, 247
SspDI GGCGCC 1 cut(s) 100
TasI AATT 2 cut(s) 109, 247
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 34, 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.