Rorug02G0215400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002856
Physical Location & Seq
Forward (+)
20622252 .. 20624059
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0215400.1

Sequence Viewer

Length: 1437 bp
ATGAGCTCTACATCTGCAACTAAGGCTGAGAAGCTCCACATAGCTTTGTTCCCATGGCTTGCCTTCGGTCACATAATCCCATTTCTTGAGGTTGCCAAGCACATAGCTCGCAGAGGCCACAAGGTTTCCTTCATTTCCACACCTAGAAACATCCAACGCCTCCCGAAAATCCCACAAAACCTAGCTCCTCTGATCACTCTAGTCCAAATCCCACTCCCCCGCGTCGAAAACCTCCCCGAAAACGCAGAGGCCACCACGGACGTCCCATATGACGTTATCCCATACCTCAAAATAGCTCATGATGGACTCGAACAGGGTATCTCTGAATTCCTACAAGCACACGCTCCGGATTGGATTATTCACGACTTTGCCCCTCACTGGTTGCCACCAATAGCTATCAAGCTCGGCATCTCACGAGCCCATTTCAGTGTCTACATGGCATCAGTTCTATGTTTCGGTGGACCAACATCACCAGTTCTAGTGTCCCGCTATGGTCTTAGAACACATCCCGAGCATTTCACTGTCCCTCCCGAATGGATTCCCTTTCCGTCCAAAGCATATTATAGGCCTTTCGAGGCCAAGAGACTGGTGGATGGTATTATGAGACCAAATGCTTCTGGCGTGTCTGATTCGTTTCGTTCGGAATCAACTATCCAAGGTTGTCAAGTCTACTTCATTCGAAGTTGTAGAGAGATCGAGGGTGAGTGGCTCGATTTGCTTGAAGACCTTCACCAAAAACCTGTAGTGCTCCCAACGGGCATATTGCCACCCTGTGTACCAAGAAGTGATGAAGACGGAAAAGATAGTAATTGGTCCAAAATTGCAGGGTGGCTGGACAAACAAGAGAAAGGCAAAGTAGTCTATGTTGCATTTGGGAGTGAGCCTGATATCAGTCAAGAAGAGTTCAATGAGTTGGCTCTTGGATTGGAGCTATGTGGATTGCCTTTTTTTTGGGTGCTCAGGAAACCGAGTCATGGATCCGGGGAAGGTGATTCAGTTAATTTTCCATATGGGTTCGAGGACCGGACCAAAGATCGTGGACTTGTCTGGCCTACATGGGCTCCTCAGCTCAAAATTTTGGCCCACGAGTCCATCGGGGGTTTCTTGACTCATTGCGGTTGGAGTTCCCTCATTGAGTCACTCCAATTCGGGCGTCCTCTAATCATGCTGCCAAATATGTATGATCAAGGGCTAATTGCTAGGTTTTGGGACAAGAAGATCGGGATAGAGGTACCGAGAGACGAAGAGAGTGGACGGTTTACAAGGAACGAGTTGGCGAATTCATTGAATTTGGTTGTGGTGGATGAGGAGGGGAAGCCATACAGAGATGGAGCTAATGAATATAGTGAGTCGTTGTTTAGGGACAAGGAACTCCATGATAAATACATGGACAAATGCGTGGAGTATTTGGAAACGCATGCGCATCATGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

478

Amino Acids

54.12

Weight (kDa)

5.76

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 283 - 458 1e-12 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
Acc16I TGCGCA 1 cut(s) 1422
Acc65I GGTACC 1 cut(s) 1231
AccB1I GGYRCC 1 cut(s) 1231
AccI GTMKAC 2 cut(s) 432, 669
AccII CGCG 1 cut(s) 222
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 3 cut(s) 220, 487, 1116
AclWI GGATC 2 cut(s) 972, 985
AcsI RAATTY 4 cut(s) 326, 1074, 1279, 1288
AcyI GRCGYC 2 cut(s) 261, 1153
AdeI CACNNNGTG 1 cut(s) 773
AfaI GTAC 2 cut(s) 777, 1233
AfiI CCNNNNNNNGG 2 cut(s) 378, 974
AgsI TTSAA 3 cut(s) 722, 907, 1288
Alw21I GWGCWC 3 cut(s) 8, 750, 960
Alw26I GTCTC 3 cut(s) 577, 598, 1233
AlwI GGATC 2 cut(s) 972, 985
Ama87I CYCGRG 1 cut(s) 509
Aor13HI TCCGGA 1 cut(s) 346
AoxI GGCC 6 cut(s) 115, 249, 566, 576, 1049, 1080
ApeKI GCWGC 1 cut(s) 1168
ApoI RAATTY 4 cut(s) 326, 1074, 1279, 1288
Asp700I GAANNNNTTC 2 cut(s) 537, 726
Asp718I GGTACC 1 cut(s) 1231
AspLEI GCGC 1 cut(s) 1423
AspS9I GGNCC 5 cut(s) 461, 813, 1021, 1026, 1081
AsuC2I CCSGG 1 cut(s) 982
AsuHPI GGTGA 4 cut(s) 462, 713, 722, 1001
AsuII TTCGAA 1 cut(s) 679
AvaI CYCGRG 1 cut(s) 509
AvaII GGWCC 4 cut(s) 461, 813, 1021, 1026
BamHI GGATCC 1 cut(s) 977
BanI GGYRCC 1 cut(s) 1231
BanII GRGCYC 3 cut(s) 8, 421, 1063
BauI CACGAG 2 cut(s) 414, 1085
BbsI GAAGAC 2 cut(s) 729, 798
Bbv12I GWGCWC 3 cut(s) 8, 750, 960
BbvCI CCTCAGC 1 cut(s) 1065
BbvI GCAGC 1 cut(s) 1155
BccI CCATC 4 cut(s) 296, 587, 1100, 1322
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BclI TGATCA 2 cut(s) 192, 1183
BcnI CCSGG 1 cut(s) 982
BcoDI GTCTC 3 cut(s) 577, 598, 1233
BfaI CTAG 5 cut(s) 144, 182, 200, 479, 1200
BfmI CTRYAG 1 cut(s) 741
BisI GCNGC 1 cut(s) 1169
BlsI GCNGC 1 cut(s) 1170
Bme1390I CCNGG 1 cut(s) 982
Bme18I GGWCC 4 cut(s) 461, 813, 1021, 1026
BmeT110I CYCGRG 1 cut(s) 509
BmgT120I GGNCC 5 cut(s) 461, 813, 1021, 1026, 1081
BmiI GGNNCC 3 cut(s) 979, 1062, 1233
BmrFI CCNGG 1 cut(s) 982
BmsI GCATC 3 cut(s) 417, 449, 1432
BpiI GAAGAC 2 cut(s) 729, 798
Bpu10I CCTNAGC 2 cut(s) 959, 1065
Bpu14I TTCGAA 1 cut(s) 679
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 982
BsaHI GRCGYC 2 cut(s) 261, 1153
BsaI GGTCTC 1 cut(s) 598
BsaJI CCNNGG 4 cut(s) 53, 255, 655, 981
BsaWI WCCGGW 2 cut(s) 346, 1023
BsaXI ACNNNNNCTCC 4 cut(s) 511, 541, 1045, 1075
Bsc4I CCNNNNNNNGG 2 cut(s) 378, 974
Bse1I ACTGG 3 cut(s) 383, 473, 591
Bse3DI GCAATG 1 cut(s) 1111
BseAI TCCGGA 1 cut(s) 346
BseDI CCNNGG 4 cut(s) 53, 255, 655, 981
BseGI GGATG 4 cut(s) 150, 505, 598, 1309
BseLI CCNNNNNNNGG 2 cut(s) 378, 974
BseMI GCAATG 1 cut(s) 1111
BseMII CTCAG 3 cut(s) 18, 973, 1079
BseNI ACTGG 3 cut(s) 383, 473, 591
BseRI GAGGAG 3 cut(s) 177, 1053, 1322
BseXI GCAGC 1 cut(s) 1155
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 6 cut(s) 117, 251, 568, 578, 1051, 1082
BshNI GGYRCC 1 cut(s) 1231
BsiHKAI GWGCWC 3 cut(s) 8, 750, 960
BsiHKCI CYCGRG 1 cut(s) 509
BsiSI CCGG 3 cut(s) 347, 981, 1024
BslFI GGGAC 5 cut(s) 248, 469, 509, 1223, 1376
BslI CCNNNNNNNGG 2 cut(s) 378, 974
BsmAI GTCTC 3 cut(s) 577, 598, 1233
BsmBI CGTCTC 1 cut(s) 1233
BsmFI GGGAC 5 cut(s) 248, 469, 509, 1223, 1376
BsnI GGCC 6 cut(s) 117, 251, 568, 578, 1051, 1082
Bso31I GGTCTC 1 cut(s) 598
BsoBI CYCGRG 1 cut(s) 509
Bsp119I TTCGAA 1 cut(s) 679
Bsp1286I GDGCHC 5 cut(s) 8, 421, 750, 960, 1063
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 6 cut(s) 192, 693, 977, 1033, 1183, 1218
Bsp19I CCATGG 1 cut(s) 53
BspACI CCGC 3 cut(s) 220, 487, 1116
BspANI GGCC 6 cut(s) 117, 251, 568, 578, 1051, 1082
BspCNI CTCAG 3 cut(s) 19, 972, 1078
BspEI TCCGGA 1 cut(s) 346
BspFNI CGCG 1 cut(s) 222
BspHI TCATGA 2 cut(s) 298, 1426
BspLI GGNNCC 3 cut(s) 979, 1062, 1233
BspPI GGATC 2 cut(s) 972, 985
BspT104I TTCGAA 1 cut(s) 679
BspT107I GGYRCC 1 cut(s) 1231
BspTNI GGTCTC 1 cut(s) 598
BsrDI GCAATG 1 cut(s) 1111
BsrI ACTGG 3 cut(s) 383, 473, 591
BssECI CCNNGG 4 cut(s) 53, 255, 655, 981
BssMI GATC 6 cut(s) 192, 693, 977, 1033, 1183, 1218
BssNI GRCGYC 2 cut(s) 261, 1153
BssSI CACGAG 2 cut(s) 414, 1085
BssT1I CCWWGG 2 cut(s) 53, 655
Bst2BI CACGAG 2 cut(s) 414, 1085
Bst4CI ACNGT 2 cut(s) 523, 1257
Bst6I CTCTTC 2 cut(s) 894, 1239
BstACI GRCGYC 2 cut(s) 261, 1153
BstBI TTCGAA 1 cut(s) 679
BstC8I GCNNGC 3 cut(s) 60, 109, 1419
BstDEI CTNAG 5 cut(s) 21, 27, 497, 959, 1065
BstDSI CCRYGG 2 cut(s) 53, 255
BstF5I GGATG 4 cut(s) 150, 505, 598, 1309
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 1423
BstKTI GATC 6 cut(s) 195, 696, 980, 1036, 1186, 1221
BstMAI GTCTC 3 cut(s) 577, 598, 1233
BstMBI GATC 6 cut(s) 192, 693, 977, 1033, 1183, 1218
BstMWI GCNNNNNNNGC 2 cut(s) 23, 715
BstNSI RCATGY 1 cut(s) 1421
BstSCI CCNGG 1 cut(s) 980
BstSFI CTRYAG 1 cut(s) 741
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 1155
BstV2I GAAGAC 2 cut(s) 729, 798
BstX2I RGATCY 1 cut(s) 977
BstXI CCANNNNNNTGG 1 cut(s) 586
BstYI RGATCY 1 cut(s) 977
BsuRI GGCC 6 cut(s) 117, 251, 568, 578, 1051, 1082
BtgI CCRYGG 2 cut(s) 53, 255
BtsCI GGATG 4 cut(s) 150, 505, 598, 1309
BtsIMutI CAGTG 3 cut(s) 376, 433, 519
Cac8I GCNNGC 3 cut(s) 60, 109, 1419
CciI TCATGA 2 cut(s) 298, 1426
CfoI GCGC 1 cut(s) 1423
Cfr13I GGNCC 5 cut(s) 461, 813, 1021, 1026, 1081
CseI GACGC 2 cut(s) 211, 1142
Csp6I GTAC 2 cut(s) 776, 1232
CspCI CAANNNNNGTGG 2 cut(s) 1018, 1053
CviQI GTAC 2 cut(s) 776, 1232
DdeI CTNAG 5 cut(s) 21, 27, 497, 959, 1065
DpnI GATC 6 cut(s) 194, 695, 979, 1035, 1185, 1220
DpnII GATC 6 cut(s) 192, 693, 977, 1033, 1183, 1218
DraIII CACNNNGTG 1 cut(s) 773
Eam1104I CTCTTC 2 cut(s) 894, 1239
EarI CTCTTC 2 cut(s) 894, 1239
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 53, 655
Eco147I AGGCCT 1 cut(s) 568
Eco24I GRGCYC 3 cut(s) 8, 421, 1063
Eco31I GGTCTC 1 cut(s) 598
Eco32I GATATC 1 cut(s) 889
Eco47I GGWCC 4 cut(s) 461, 813, 1021, 1026
Eco53kI GAGCTC 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 509
EcoICRI GAGCTC 1 cut(s) 6
EcoRI GAATTC 2 cut(s) 326, 1279
EcoRV GATATC 1 cut(s) 889
EcoT14I CCWWGG 2 cut(s) 53, 655
EcoT38I GRGCYC 3 cut(s) 8, 421, 1063
ErhI CCWWGG 2 cut(s) 53, 655
Esp3I CGTCTC 1 cut(s) 1233
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 5 cut(s) 248, 469, 509, 1223, 1376
FauI CCCGC 2 cut(s) 227, 494
FauNDI CATATG 2 cut(s) 268, 1009
FbaI TGATCA 2 cut(s) 192, 1183
FblI GTMKAC 2 cut(s) 432, 669
Fnu4HI GCNGC 1 cut(s) 1169
FokI GGATG 4 cut(s) 137, 492, 605, 1316
FriOI GRGCYC 3 cut(s) 8, 421, 1063
Fsp4HI GCNGC 1 cut(s) 1169
FspAI RTGCGCAY 1 cut(s) 1422
FspBI CTAG 5 cut(s) 144, 182, 200, 479, 1200
FspI TGCGCA 1 cut(s) 1422
GlaI GCGC 1 cut(s) 1422
GluI GCNGC 1 cut(s) 1169
HaeIII GGCC 6 cut(s) 117, 251, 568, 578, 1051, 1082
HapII CCGG 3 cut(s) 347, 981, 1024
HgaI GACGC 2 cut(s) 211, 1142
HhaI GCGC 1 cut(s) 1423
Hin1I GRCGYC 2 cut(s) 261, 1153
Hin6I GCGC 1 cut(s) 1421
HinP1I GCGC 1 cut(s) 1421
HpaII CCGG 3 cut(s) 347, 981, 1024
HphI GGTGA 4 cut(s) 462, 713, 722, 1001
Hpy166II GTNNAC 7 cut(s) 433, 461, 670, 776, 1040, 1253, 1260
Hpy188I TCNGA 4 cut(s) 192, 325, 628, 643
Hpy8I GTNNAC 7 cut(s) 433, 461, 670, 776, 1040, 1253, 1260
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 4 cut(s) 73, 139, 737, 980
HpyCH4III ACNGT 2 cut(s) 523, 1257
HpyCH4IV ACGT 2 cut(s) 261, 273
HpyCH4V TGCA 3 cut(s) 17, 824, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 715
HpyF3I CTNAG 5 cut(s) 21, 27, 497, 959, 1065
HpySE526I ACGT 2 cut(s) 261, 273
Hsp92I GRCGYC 2 cut(s) 261, 1153
HspAI GCGC 1 cut(s) 1421
Kpn2I TCCGGA 1 cut(s) 346
KpnI GGTACC 1 cut(s) 1235
Ksp22I TGATCA 2 cut(s) 192, 1183
Kzo9I GATC 6 cut(s) 192, 693, 977, 1033, 1183, 1218
LmnI GCTCC 7 cut(s) 39, 190, 349, 753, 928, 1066, 1331
Lsp1109I GCAGC 1 cut(s) 1155
LweI GCATC 3 cut(s) 417, 449, 1432
MaeI CTAG 5 cut(s) 144, 182, 200, 479, 1200
MaeII ACGT 2 cut(s) 261, 273
MaeIII GTNAC 2 cut(s) 68, 1137
MalI GATC 6 cut(s) 194, 695, 979, 1035, 1185, 1220
MboI GATC 6 cut(s) 192, 693, 977, 1033, 1183, 1218
MboII GAAGA 5 cut(s) 734, 803, 911, 1228, 1256
MflI RGATCY 1 cut(s) 977
MhlI GDGCHC 5 cut(s) 8, 421, 750, 960, 1063
MluCI AATT 9 cut(s) 326, 808, 819, 1000, 1074, 1145, 1194, 1279, 1288
MlyI GAGTC 6 cut(s) 300, 979, 1097, 1102, 1145, 1358
MmeI TCCRAC 2 cut(s) 178, 1100
MroI TCCGGA 1 cut(s) 346
MroXI GAANNNNTTC 2 cut(s) 537, 726
MseI TTAA 1 cut(s) 999
MslI CAYNNNNRTG 1 cut(s) 426
MspI CCGG 3 cut(s) 347, 981, 1024
MspR9I CCNGG 1 cut(s) 982
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 23, 715
NciI CCSGG 1 cut(s) 982
NcoI CCATGG 1 cut(s) 53
NdeI CATATG 2 cut(s) 268, 1009
NdeII GATC 6 cut(s) 192, 693, 977, 1033, 1183, 1218
NlaIV GGNNCC 3 cut(s) 979, 1062, 1233
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 68, 1137
NsbI TGCGCA 1 cut(s) 1422
NspI RCATGY 1 cut(s) 1421
NspV TTCGAA 1 cut(s) 679
PaeI GCATGC 1 cut(s) 1421
PagI TCATGA 2 cut(s) 298, 1426
PceI AGGCCT 1 cut(s) 568
PdmI GAANNNNTTC 2 cut(s) 537, 726
PfeI GAWTC 4 cut(s) 538, 629, 644, 992
PkrI GCNGC 1 cut(s) 1170
PleI GAGTC 6 cut(s) 300, 978, 1096, 1102, 1144, 1357
PpsI GAGTC 6 cut(s) 300, 978, 1096, 1102, 1144, 1357
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 3 cut(s) 979, 1062, 1233
PspPI GGNCC 5 cut(s) 461, 813, 1021, 1026, 1081
PsuI RGATCY 1 cut(s) 977
RsaI GTAC 2 cut(s) 777, 1233
RsaNI GTAC 2 cut(s) 776, 1232
RseI CAYNNNNRTG 1 cut(s) 426
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 999
SatI GCNGC 1 cut(s) 1169
Sau3AI GATC 6 cut(s) 192, 693, 977, 1033, 1183, 1218
Sau96I GGNCC 5 cut(s) 461, 813, 1021, 1026, 1081
SchI GAGTC 6 cut(s) 300, 979, 1097, 1102, 1145, 1358
ScrFI CCNGG 1 cut(s) 982
SduI GDGCHC 5 cut(s) 8, 421, 750, 960, 1063
SfaNI GCATC 3 cut(s) 417, 449, 1432
SfcI CTRYAG 1 cut(s) 741
SfuI TTCGAA 1 cut(s) 679
SinI GGWCC 4 cut(s) 461, 813, 1021, 1026
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SphI GCATGC 1 cut(s) 1421
Sse9I AATT 9 cut(s) 326, 808, 819, 1000, 1074, 1145, 1194, 1279, 1288
SseBI AGGCCT 1 cut(s) 568
SsiI CCGC 3 cut(s) 220, 487, 1116
SspMI CTAG 5 cut(s) 144, 182, 200, 479, 1200
SstI GAGCTC 1 cut(s) 8
StuI AGGCCT 1 cut(s) 568
StyD4I CCNGG 1 cut(s) 980
StyI CCWWGG 2 cut(s) 53, 655
TaaI ACNGT 2 cut(s) 523, 1257
TaiI ACGT 2 cut(s) 264, 276
TaqI TCGA 7 cut(s) 225, 309, 573, 679, 696, 711, 1017
TaqII GACCGA 1 cut(s) 56
TasI AATT 9 cut(s) 326, 808, 819, 1000, 1074, 1145, 1194, 1279, 1288
TfiI GAWTC 4 cut(s) 538, 629, 644, 992
Tru1I TTAA 1 cut(s) 999
Tru9I TTAA 1 cut(s) 999
TscAI CASTG 3 cut(s) 383, 433, 526
TseFI GTSAC 2 cut(s) 68, 1137
TseI GCWGC 1 cut(s) 1168
Tsp45I GTSAC 2 cut(s) 68, 1137
TspDTI ATGAA 5 cut(s) 121, 664, 804, 1272, 1353
TspGWI ACGGA 3 cut(s) 272, 537, 810
TspRI CASTG 3 cut(s) 383, 433, 526
VpaK11BI GGWCC 4 cut(s) 461, 813, 1021, 1026
XapI RAATTY 4 cut(s) 326, 1074, 1279, 1288
XceI RCATGY 1 cut(s) 1421
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XmiI GTMKAC 2 cut(s) 432, 669
XmnI GAANNNNTTC 2 cut(s) 537, 726
XspI CTAG 5 cut(s) 144, 182, 200, 479, 1200
ZraI GACGTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.