Rh7DG011500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002856
Physical Location & Seq
Forward (+)
967569 .. 968030
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG011500.1

Sequence Viewer

Length: 342 bp
ATGATGGCTTTCTTAACGGTGAACAAGCGCAATAACATCTCTCTTCAGCTCGCATTTCTGCTACTCTTCCTCGTCCCGGCACTATTACTCGTAGTTCATGCACGAGATATCAGCAGCAGCAGCAGAAGGCTCGATGTCGTCGTGAAGAAAGGTGCTGCTGCAAGTAGTGTGCTTCAAGATGCAGAACCAGTCGAGAGCAGTGATATCAGCAGCAGCAGAAGCAGCCACGCATTTGAAAAAAAGCACGAACAAGAGAATCTGACTGGTACAGAAGGCATAGATGACGATTTACTGGTCGGGGATTACACCCCAACTAGAAAGAAGTCTCCCATTCATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.39

Weight (kDa)

6.4

Isoelectric Point (pI)

69.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 72 - 113 1.9e-06 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 29
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 2 cut(s) 176, 236
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 330
ApeKI GCWGC 8 cut(s) 114, 117, 120, 155, 158, 210, 213, 222
AspLEI GCGC 1 cut(s) 30
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 31
BauI CACGAG 1 cut(s) 102
BbvI GCAGC 8 cut(s) 126, 129, 132, 142, 145, 222, 225, 234
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BcnI CCSGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 1 cut(s) 315
BisI GCNGC 8 cut(s) 115, 118, 121, 156, 159, 211, 214, 223
BlsI GCNGC 8 cut(s) 116, 119, 122, 157, 160, 212, 215, 224
Bme1390I CCNGG 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 3 cut(s) 188, 268, 297
BseLI CCNNNNNNNGG 1 cut(s) 76
BseNI ACTGG 3 cut(s) 188, 268, 297
BseXI GCAGC 8 cut(s) 126, 129, 132, 142, 145, 222, 225, 234
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 59
BsrI ACTGG 3 cut(s) 188, 268, 297
BssSI CACGAG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 2 cut(s) 48, 71
BstC8I GCNNGC 1 cut(s) 51
BstHHI GCGC 1 cut(s) 30
BstMAI GTCTC 1 cut(s) 330
BstMWI GCNNNNNNNGC 3 cut(s) 120, 219, 222
BstSCI CCNGG 1 cut(s) 75
BstV1I GCAGC 8 cut(s) 126, 129, 132, 142, 145, 222, 225, 234
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 267
CviAII CATG 1 cut(s) 98
CviJI RGCY 4 cut(s) 8, 49, 130, 225
CviKI_1 RGCY 4 cut(s) 8, 49, 130, 225
CviQI GTAC 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 48, 71
EarI CTCTTC 2 cut(s) 48, 71
Eco32I GATATC 2 cut(s) 109, 205
Eco57I CTGAAG 1 cut(s) 29
EcoRV GATATC 2 cut(s) 109, 205
FaeI CATG 1 cut(s) 101
FaiI YATR 3 cut(s) 99, 278, 336
FaqI GGGAC 1 cut(s) 59
FatI CATG 1 cut(s) 97
Fnu4HI GCNGC 8 cut(s) 115, 118, 121, 156, 159, 211, 214, 223
Fsp4HI GCNGC 8 cut(s) 115, 118, 121, 156, 159, 211, 214, 223
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 29
GluI GCNGC 8 cut(s) 115, 118, 121, 156, 159, 211, 214, 223
HapII CCGG 1 cut(s) 77
HhaI GCGC 1 cut(s) 30
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HinfI GANTC 1 cut(s) 256
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 3 cut(s) 142, 176, 193
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 120, 266
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 101, 161, 182
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 219, 222
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 28
LpnPI CCDG 4 cut(s) 90, 201, 249, 278
Lsp1109I GCAGC 8 cut(s) 126, 129, 132, 142, 145, 222, 225, 234
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 315
MboII GAAGA 3 cut(s) 35, 58, 157
MnlI CCTC 1 cut(s) 80
MseI TTAA 1 cut(s) 14
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 77
MwoI GCNNNNNNNGC 3 cut(s) 120, 219, 222
NciI CCSGG 1 cut(s) 77
NlaIII CATG 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 8 cut(s) 116, 119, 122, 157, 160, 212, 215, 224
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 8 cut(s) 115, 118, 121, 156, 159, 211, 214, 223
ScrFI CCNGG 1 cut(s) 77
SetI ASST 2 cut(s) 51, 154
SfaNI GCATC 1 cut(s) 169
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 19
TaqI TCGA 2 cut(s) 132, 192
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 205
TseI GCWGC 8 cut(s) 114, 117, 120, 155, 158, 210, 213, 222
TspDTI ATGAA 2 cut(s) 86, 323
TspRI CASTG 1 cut(s) 205
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.