FvH4_1g23231

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002856
Physical Location & Seq
Forward (+)
15082953 .. 15084293
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23231.t1

Sequence Viewer

Length: 267 bp
ATGGCAATGGTACCATGCAAGCGCCTTGTTCTTTCTGTTATGTTCTTTCTTTGTTTGATCTCTGTCACTACTATCAGAGCAAGGAGTTTGCAAGTGGCACCTAGTAGTAATGGAAGTGATCGTCAACAAGGCACGGATTATAAGTTTCCATCAAACCAAGATGGTGTTCTTGATGGGAGTCATGGGACTACTGAGGAAGTAAATTTTGCAGATTACAGCCCACCAAAGACGCATCCTCCACATGTTCCATCTCAGATTTTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.63

Weight (kDa)

6.81

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 11 - 80 3.3e-07 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
Acc65I GGTACC 1 cut(s) 10
AccB1I GGYRCC 2 cut(s) 10, 97
AcsI RAATTY 1 cut(s) 202
AfaI GTAC 1 cut(s) 12
AflIII ACRYGT 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
ApoI RAATTY 1 cut(s) 202
Asp718I GGTACC 1 cut(s) 10
AspLEI GCGC 1 cut(s) 24
BanI GGYRCC 2 cut(s) 10, 97
BccI CCATC 4 cut(s) 155, 157, 167, 256
BfaI CTAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 12, 99
BmsI GCATC 1 cut(s) 241
BsaBI GATNNNNATC 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bse3DI GCAATG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 260
BseGI GGATG 1 cut(s) 232
BseJI GATNNNNATC 1 cut(s) 260
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 183, 266
BshNI GGYRCC 2 cut(s) 10, 97
BslFI GGGAC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 199
Bsp143I GATC 3 cut(s) 57, 118, 261
BspCNI CTCAG 2 cut(s) 184, 265
BspLI GGNNCC 2 cut(s) 12, 99
BspT107I GGYRCC 2 cut(s) 10, 97
BsrDI GCAATG 1 cut(s) 12
BssMI GATC 3 cut(s) 57, 118, 261
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 192, 252
BstF5I GGATG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 25
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 3 cut(s) 60, 121, 264
BstMBI GATC 3 cut(s) 57, 118, 261
BstNSI RCATGY 1 cut(s) 245
BtsCI GGATG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 20
CfoI GCGC 1 cut(s) 24
CseI GACGC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 11
CviAII CATG 3 cut(s) 15, 182, 242
CviJI RGCY 1 cut(s) 219
CviKI_1 RGCY 1 cut(s) 219
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 2 cut(s) 192, 252
DpnI GATC 3 cut(s) 59, 120, 263
DpnII GATC 3 cut(s) 57, 118, 261
FaeI CATG 3 cut(s) 18, 185, 245
FaiI YATR 5 cut(s) 16, 41, 141, 183, 243
FaqI GGGAC 1 cut(s) 199
FatI CATG 3 cut(s) 14, 181, 241
FokI GGATG 1 cut(s) 219
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 23
HaeII RGCGCY 1 cut(s) 25
HgaI GACGC 1 cut(s) 238
HhaI GCGC 1 cut(s) 24
Hin1II CATG 3 cut(s) 18, 185, 245
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 125
HindII GTYRAC 1 cut(s) 125
HinfI GANTC 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 2 cut(s) 77, 255
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 125
HpyCH4V TGCA 3 cut(s) 18, 91, 209
HpyF3I CTNAG 2 cut(s) 192, 252
Hsp92II CATG 3 cut(s) 18, 185, 245
HspAI GCGC 1 cut(s) 22
KpnI GGTACC 1 cut(s) 14
Kzo9I GATC 3 cut(s) 57, 118, 261
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 64
MalI GATC 3 cut(s) 59, 120, 263
MboI GATC 3 cut(s) 57, 118, 261
MluCI AATT 1 cut(s) 202
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 2 cut(s) 187, 246
NdeII GATC 3 cut(s) 57, 118, 261
NlaIII CATG 3 cut(s) 18, 185, 245
NlaIV GGNNCC 2 cut(s) 12, 99
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 245
PciI ACATGT 1 cut(s) 241
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PscI ACATGT 1 cut(s) 241
PsiI TTATAA 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 12, 99
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
Sau3AI GATC 3 cut(s) 57, 118, 261
SchI GAGTC 1 cut(s) 187
SetI ASST 1 cut(s) 103
SfaNI GCATC 1 cut(s) 241
Sse9I AATT 1 cut(s) 202
SspMI CTAG 1 cut(s) 102
TasI AATT 1 cut(s) 202
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspGWI ACGGA 1 cut(s) 149
XapI RAATTY 1 cut(s) 202
XceI RCATGY 1 cut(s) 245
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.