MD01G1015700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0002856
Physical Location & Seq
Forward (+)
7233559 .. 7234034
476 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1015700.v1.1.491

Sequence Viewer

Length: 225 bp
ATGGCCGCAATTCCATGCAAGCACCTTGTTGTTGTGGCTTTCTTCTTGCTTTGTTTCGTCTCTATCACAGCTCAAGGAAGGAGTTTGGGACTGGTTAGTAAGAGAGCTGGTGATGCTTATCAGAAGAATGAGGATGATCAAGCAGTAGTACTGCAGGATGAGATTAATGATTTACTGGCTATGGATTACACTCCAGCAAGAAAAAAGCCTCCAATCCATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.16

Weight (kDa)

6.7

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 10 - 74 7.9e-23 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 150
AluBI AGCT 2 cut(s) 71, 107
AluI AGCT 2 cut(s) 71, 107
Alw26I GTCTC 1 cut(s) 64
AoxI GGCC 1 cut(s) 3
AseI ATTAAT 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 122
BclI TGATCA 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 64
BfmI CTRYAG 1 cut(s) 152
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 150
BmsI GCATC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 117
Bse1I ACTGG 2 cut(s) 96, 180
Bse8I GATNNNNATC 1 cut(s) 117
BseGI GGATG 2 cut(s) 139, 163
BseJI GATNNNNATC 1 cut(s) 117
BseNI ACTGG 2 cut(s) 96, 180
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 64
BsmBI CGTCTC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 5
BspMAI CTGCAG 1 cut(s) 156
BsrI ACTGG 2 cut(s) 96, 180
BssMI GATC 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 20
BstF5I GGATG 2 cut(s) 139, 163
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 152
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 139, 163
Cac8I GCNNGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 149
CviAII CATG 1 cut(s) 15
CviJI RGCY 6 cut(s) 5, 38, 71, 107, 179, 208
CviKI_1 RGCY 6 cut(s) 5, 38, 71, 107, 179, 208
CviQI GTAC 1 cut(s) 149
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 3
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 1 cut(s) 18
FaiI YATR 3 cut(s) 16, 182, 219
FaqI GGGAC 1 cut(s) 102
FatI CATG 1 cut(s) 14
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 146, 170
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 18
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 18, 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92II CATG 1 cut(s) 18
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 5 cut(s) 77, 93, 140, 161, 207
LweI GCATC 1 cut(s) 103
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 2 cut(s) 34, 136
MluCI AATT 1 cut(s) 9
MnlI CCTC 2 cut(s) 124, 219
MseI TTAA 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 1 cut(s) 136
NlaIII CATG 1 cut(s) 18
PkrI GCNGC 1 cut(s) 7
PshBI ATTAAT 1 cut(s) 165
PstI CTGCAG 1 cut(s) 156
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 136
ScaI AGTACT 1 cut(s) 150
SetI ASST 3 cut(s) 27, 73, 109
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 1 cut(s) 9
SsiI CCGC 1 cut(s) 6
TasI AATT 1 cut(s) 9
TatI WGTACW 1 cut(s) 148
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
VspI ATTAAT 1 cut(s) 165
ZrmI AGTACT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.