Rh7BG027400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002856
Physical Location & Seq
Forward (+)
1919689 .. 1920160
472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG027400.1

Sequence Viewer

Length: 258 bp
ATGTCTTTCTTAACGGTGAACAAGCGCAATAACATCTCTCTTCAGCCGATCGCATTTACGCTACTCTTCCTCGTCTCGGCACTATTACTCGTAGCTCATGAAACAGTCGAGAGCAGTGATATCAGCAGCAGCAGAATCAGCCACACATTTGAAACAAAGCACGAACAAGAGAATCTGAGTGGTACAGAAGGCACAGATGACGACTTACTGGTCGTGGATTACACCCCAGCTAGAAAGAAGTCTCCCATTCATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.47

Weight (kDa)

5.39

Isoelectric Point (pI)

59.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 45 - 85 1.5e-08 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 2 cut(s) 95, 230
AluI AGCT 2 cut(s) 95, 230
Alw26I GTCTC 2 cut(s) 79, 246
ApeKI GCWGC 2 cut(s) 126, 129
AspLEI GCGC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 28
BbvI GCAGC 2 cut(s) 138, 141
BcoDI GTCTC 2 cut(s) 79, 246
BfaI CTAG 1 cut(s) 231
BisI GCNGC 2 cut(s) 127, 130
BlsI GCNGC 2 cut(s) 128, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 213
BseXI GCAGC 2 cut(s) 138, 141
BseYI CCCAGC 1 cut(s) 226
Bsh1285I CGRYCG 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 2 cut(s) 79, 246
BsmBI CGTCTC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 168
BspHI TCATGA 1 cut(s) 97
BsrI ACTGG 1 cut(s) 213
BssMI GATC 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 16, 106
Bst6I CTCTTC 2 cut(s) 45, 71
BstDEI CTNAG 1 cut(s) 176
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 1 cut(s) 51
BstMAI GTCTC 2 cut(s) 79, 246
BstMBI GATC 1 cut(s) 48
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 138, 141
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 121
CciI TCATGA 1 cut(s) 97
CfoI GCGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 183
CviAII CATG 1 cut(s) 98
CviJI RGCY 4 cut(s) 46, 95, 141, 230
CviKI_1 RGCY 4 cut(s) 46, 95, 141, 230
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 1 cut(s) 176
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 2 cut(s) 45, 71
EarI CTCTTC 2 cut(s) 45, 71
Eco32I GATATC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 26
EcoRV GATATC 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 1 cut(s) 101
FaiI YATR 2 cut(s) 99, 252
FatI CATG 1 cut(s) 97
Fnu4HI GCNGC 2 cut(s) 127, 130
Fsp4HI GCNGC 2 cut(s) 127, 130
FspBI CTAG 1 cut(s) 231
GlaI GCGC 1 cut(s) 26
GluI GCNGC 2 cut(s) 127, 130
GsaI CCCAGC 1 cut(s) 230
HhaI GCGC 1 cut(s) 27
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 2 cut(s) 135, 172
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 2 cut(s) 98, 109
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 2 cut(s) 16, 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 48
LpnPI CCDG 2 cut(s) 194, 240
Lsp1109I GCAGC 2 cut(s) 138, 141
MaeI CTAG 1 cut(s) 231
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 2 cut(s) 32, 58
MnlI CCTC 1 cut(s) 80
MseI TTAA 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 138
NdeII GATC 1 cut(s) 48
NlaIII CATG 1 cut(s) 101
NmeAIII GCCGAG 1 cut(s) 56
PagI TCATGA 1 cut(s) 97
PfeI GAWTC 2 cut(s) 135, 172
PkrI GCNGC 2 cut(s) 128, 131
Ple19I CGATCG 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 226
PvuI CGATCG 1 cut(s) 51
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 2 cut(s) 127, 130
Sau3AI GATC 1 cut(s) 48
SetI ASST 2 cut(s) 97, 232
SspMI CTAG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 16, 106
TaqI TCGA 1 cut(s) 108
TfiI GAWTC 2 cut(s) 135, 172
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 121
TseI GCWGC 2 cut(s) 126, 129
TspDTI ATGAA 2 cut(s) 114, 239
TspRI CASTG 1 cut(s) 121
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.