Rroxscaffold_2G00125980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002856
Physical Location & Seq
Reverse (-)
61050399 .. 61051034
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00125980.1

Sequence Viewer

Length: 252 bp
ATGGCAGCTGTGATACGATACAAGCACCTTGTTCTTGTGGCTTTCATCTTTCTTTGGTTCATCACTATGACAACAACTGAAGCACGAAGTTTGGGAGTGGCGCCAAGTAATTATAGATCTGATGAGAAGAGCCATGATGACACCTTGAAACATGGGATCAAAGAAGATGATGGAGTAGTGCCAGATGAGAGTAATGATTTACTGGCTATGGATTACACTCCAGCAAGTAAAAAGCCTCCAATCCACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.33

Weight (kDa)

5.69

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 11 - 83 1.4e-19 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AclWI GGATC 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 101
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
AlwI GGATC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 164
BfoI RGCGCY 1 cut(s) 104
BglII AGATCT 1 cut(s) 116
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 100
Bsp143I GATC 2 cut(s) 116, 156
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 100
BsrI ACTGG 1 cut(s) 207
BssMI GATC 2 cut(s) 116, 156
BssNI GRCGYC 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 2 cut(s) 119, 159
BstMBI GATC 2 cut(s) 116, 156
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
CfoI GCGC 1 cut(s) 103
CviAII CATG 2 cut(s) 134, 152
CviJI RGCY 5 cut(s) 8, 41, 132, 206, 235
CviKI_1 RGCY 5 cut(s) 8, 41, 132, 206, 235
DinI GGCGCC 1 cut(s) 102
DpnI GATC 2 cut(s) 118, 158
DpnII GATC 2 cut(s) 116, 156
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 99
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
FaeI CATG 2 cut(s) 137, 155
FaiI YATR 5 cut(s) 68, 114, 135, 153, 209
FatI CATG 2 cut(s) 133, 151
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GlaI GCGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 104
HhaI GCGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 2 cut(s) 137, 155
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
Hpy188I TCNGA 1 cut(s) 121
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 2 cut(s) 137, 155
HspAI GCGC 1 cut(s) 101
KasI GGCGCC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 116, 156
LguI GCTCTTC 1 cut(s) 122
LpnPI CCDG 3 cut(s) 188, 195, 234
Lsp1109I GCAGC 1 cut(s) 17
MalI GATC 2 cut(s) 118, 158
MboI GATC 2 cut(s) 116, 156
MboII GAAGA 2 cut(s) 139, 176
MflI RGATCY 1 cut(s) 116
MluCI AATT 2 cut(s) 109, 247
Mly113I GGCGCC 1 cut(s) 101
MnlI CCTC 1 cut(s) 246
MseI TTAA 1 cut(s) 250
MslI CAYNNNNRTG 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 8
NarI GGCGCC 1 cut(s) 101
NdeII GATC 2 cut(s) 116, 156
NlaIII CATG 2 cut(s) 137, 155
NlaIV GGNNCC 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 7
PluTI GGCGCC 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 65
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 250
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 116, 156
SetI ASST 3 cut(s) 10, 30, 146
SfoI GGCGCC 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 65
Sse9I AATT 2 cut(s) 109, 247
SspDI GGCGCC 1 cut(s) 100
TasI AATT 2 cut(s) 109, 247
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 34, 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.