Rh2DG298200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002856
Physical Location & Seq
Forward (+)
35384595 .. 35384948
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG298200.1

Sequence Viewer

Length: 246 bp
ATGGCTATAATACTATGCAAGCGTCTTGTTCTTTCTGTTCTTATCTTGGTTTTCTTCATCTCTATCACTGCTAGAGCAAGGAGTTTGCAAGTGTCACAAAGCAGCAATGGAAGTGATCGTCAAAAAGGCATGGACTATAAGTTTCCATCAAACCAAGATGATGTTCTTGATGGGACTACCGAGGAAGTATATCTTCCGGATTACAGTCCGCCAAAGACACATCCTCCGTCTGAGATCTTGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.04

Weight (kDa)

5.63

Isoelectric Point (pI)

68.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 11 - 76 8.4e-10 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 1 cut(s) 209
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
Aor13HI TCCGGA 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 114
BccI CCATC 2 cut(s) 154, 164
BfaI CTAG 2 cut(s) 72, 244
BglII AGATCT 1 cut(s) 234
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bse3DI GCAATG 1 cut(s) 112
BseAI TCCGGA 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 220
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 187
Bsp13I TCCGGA 1 cut(s) 196
Bsp143I GATC 2 cut(s) 115, 234
BspACI CCGC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 223
BspEI TCCGGA 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 2 cut(s) 115, 234
Bst4CI ACNGT 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 2 cut(s) 118, 237
BstMBI GATC 2 cut(s) 115, 234
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BtsCI GGATG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 20
CseI GACGC 1 cut(s) 11
CviAII CATG 1 cut(s) 130
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 117, 236
DpnII GATC 2 cut(s) 115, 234
EciI GGCGGA 1 cut(s) 198
FaeI CATG 1 cut(s) 133
FaiI YATR 5 cut(s) 8, 16, 131, 138, 190
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 103
FokI GGATG 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 103
FspBI CTAG 2 cut(s) 72, 244
GluI GCNGC 1 cut(s) 103
HapII CCGG 1 cut(s) 197
HgaI GACGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 133
HpaII CCGG 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 3 cut(s) 167, 197, 238
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 2 cut(s) 18, 88
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 1 cut(s) 133
Kpn2I TCCGGA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 115, 234
LpnPI CCDG 1 cut(s) 210
Lsp1109I GCAGC 1 cut(s) 114
MaeI CTAG 2 cut(s) 72, 244
MaeIII GTNAC 1 cut(s) 93
MalI GATC 2 cut(s) 117, 236
MboI GATC 2 cut(s) 115, 234
MboII GAAGA 2 cut(s) 46, 185
MflI RGATCY 1 cut(s) 234
MnlI CCTC 2 cut(s) 175, 234
MroI TCCGGA 1 cut(s) 196
MspI CCGG 1 cut(s) 197
NdeII GATC 2 cut(s) 115, 234
NlaIII CATG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 93
PkrI GCNGC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 234
SatI GCNGC 1 cut(s) 103
Sau3AI GATC 2 cut(s) 115, 234
SetI ASST 1 cut(s) 245
SsiI CCGC 1 cut(s) 209
SspMI CTAG 2 cut(s) 72, 244
TaaI ACNGT 1 cut(s) 206
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 93
TseI GCWGC 1 cut(s) 102
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 46
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 73
XspI CTAG 2 cut(s) 72, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.