Rh7CG011600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002856
Physical Location & Seq
Forward (+)
877352 .. 878326
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG011600.1

Sequence Viewer

Length: 345 bp
ATGATGGCTTTCTTAACGGTGAACAAGCGCAATAACATCTCTCTTCAGCTCGCATTTCTGCTACTCTTCCTCGTCCCGGCACTATTACTCGTAGCTCATGCACGAGATATCAGCAGCAGCAGCAGAAGGCTCGATGTCGTCGTGAAGAAAGGTGCCGCTGCAAGTAGTGTGCTTCAAGATGCAGAACCAGTCGAGAGCAGTGATATCAGCAGCAGCAGAAGCAGCCACGCATTTGAAAAATTAAAGCACGAACAAGAGAATCTGACTGGTACAGAAGGCATAGATGACGATTTACTGGTCGGGGATTACACCCCAACTAGAAAGAAGTCTCCCATTCATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.47

Weight (kDa)

6.4

Isoelectric Point (pI)

66.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 73 - 114 3.7e-06 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AciI CCGC 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 29
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 2 cut(s) 176, 236
AluBI AGCT 2 cut(s) 49, 95
AluI AGCT 2 cut(s) 49, 95
Alw26I GTCTC 1 cut(s) 333
ApeKI GCWGC 7 cut(s) 114, 117, 120, 158, 210, 213, 222
AspLEI GCGC 1 cut(s) 30
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 31
BanI GGYRCC 1 cut(s) 152
BauI CACGAG 1 cut(s) 102
BbvI GCAGC 7 cut(s) 126, 129, 132, 145, 222, 225, 234
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BcnI CCSGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 333
BfaI CTAG 1 cut(s) 318
BisI GCNGC 8 cut(s) 115, 118, 121, 156, 159, 211, 214, 223
BlsI GCNGC 8 cut(s) 116, 119, 122, 157, 160, 212, 215, 224
Bme1390I CCNGG 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 3 cut(s) 188, 271, 300
BseLI CCNNNNNNNGG 1 cut(s) 76
BseNI ACTGG 3 cut(s) 188, 271, 300
BseXI GCAGC 7 cut(s) 126, 129, 132, 145, 222, 225, 234
BshNI GGYRCC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 59
BspACI CCGC 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 152
BsrI ACTGG 3 cut(s) 188, 271, 300
BssSI CACGAG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 2 cut(s) 48, 71
BstC8I GCNNGC 1 cut(s) 51
BstHHI GCGC 1 cut(s) 30
BstMAI GTCTC 1 cut(s) 333
BstMWI GCNNNNNNNGC 3 cut(s) 120, 219, 222
BstSCI CCNGG 1 cut(s) 75
BstV1I GCAGC 7 cut(s) 126, 129, 132, 145, 222, 225, 234
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 270
CviAII CATG 1 cut(s) 98
CviJI RGCY 5 cut(s) 8, 49, 95, 130, 225
CviKI_1 RGCY 5 cut(s) 8, 49, 95, 130, 225
CviQI GTAC 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 48, 71
EarI CTCTTC 2 cut(s) 48, 71
Eco32I GATATC 2 cut(s) 109, 205
Eco57I CTGAAG 1 cut(s) 29
EcoRV GATATC 2 cut(s) 109, 205
FaeI CATG 1 cut(s) 101
FaiI YATR 3 cut(s) 99, 281, 339
FaqI GGGAC 1 cut(s) 59
FatI CATG 1 cut(s) 97
Fnu4HI GCNGC 8 cut(s) 115, 118, 121, 156, 159, 211, 214, 223
Fsp4HI GCNGC 8 cut(s) 115, 118, 121, 156, 159, 211, 214, 223
FspBI CTAG 1 cut(s) 318
GlaI GCGC 1 cut(s) 29
GluI GCNGC 8 cut(s) 115, 118, 121, 156, 159, 211, 214, 223
HapII CCGG 1 cut(s) 77
HhaI GCGC 1 cut(s) 30
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HinfI GANTC 1 cut(s) 259
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 3 cut(s) 142, 176, 193
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 120, 269
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 101, 161, 182
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 219, 222
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 28
LpnPI CCDG 4 cut(s) 90, 201, 252, 281
Lsp1109I GCAGC 7 cut(s) 126, 129, 132, 145, 222, 225, 234
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 318
MboII GAAGA 3 cut(s) 35, 58, 157
MluCI AATT 1 cut(s) 239
MnlI CCTC 1 cut(s) 80
MseI TTAA 2 cut(s) 14, 242
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 77
MwoI GCNNNNNNNGC 3 cut(s) 120, 219, 222
NciI CCSGG 1 cut(s) 77
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 8 cut(s) 116, 119, 122, 157, 160, 212, 215, 224
PspN4I GGNNCC 1 cut(s) 154
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 14, 242
SatI GCNGC 8 cut(s) 115, 118, 121, 156, 159, 211, 214, 223
ScrFI CCNGG 1 cut(s) 77
SetI ASST 3 cut(s) 51, 97, 154
SfaNI GCATC 1 cut(s) 169
Sse9I AATT 1 cut(s) 239
SsiI CCGC 1 cut(s) 156
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 19
TaqI TCGA 2 cut(s) 132, 192
TasI AATT 1 cut(s) 239
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 2 cut(s) 14, 242
Tru9I TTAA 2 cut(s) 14, 242
TscAI CASTG 1 cut(s) 205
TseI GCWGC 7 cut(s) 114, 117, 120, 158, 210, 213, 222
TspDTI ATGAA 1 cut(s) 326
TspRI CASTG 1 cut(s) 205
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.