FvH4_5g17662

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002856
Physical Location & Seq
Reverse (-)
10112839 .. 10113318
480 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17662.t1

Sequence Viewer

Length: 345 bp
ATGGCTTTCGTAACTGTGAACAAGCGCAGTATCATCTCTCTTCACCTCGCATTTACGCTAGTACCCTTCCTCATCTCGTCACTACCACTCGTAGCTCATGCACGAGATATCAGCAGCAGCAGAAGGATCGATGCCGTCATGAAAAAAGGTGCGGCTGTGAGTAGTGTGCTTCAAGATGCAGAACTAGTCGAGACCAGTGATATCAGCAGCAGCAGAAGCAGCCACCCATTTGAAACCAAGCAAAAGCAAGAGAATCTGGGCGGTGCTGCTGCACAAGGCATAGATGACGACTCACTGGTCGTGGATTACACCCCAGTTAGAAGCAAGTCTCCCATCCATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.27

Weight (kDa)

6.9

Isoelectric Point (pI)

69.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AciI CCGC 2 cut(s) 152, 261
AclWI GGATC 1 cut(s) 134
AfaI GTAC 1 cut(s) 63
AgsI TTSAA 2 cut(s) 173, 233
AhlI ACTAGT 1 cut(s) 184
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 185, 333
AlwI GGATC 1 cut(s) 134
ApeKI GCWGC 7 cut(s) 114, 117, 207, 210, 219, 266, 269
AspLEI GCGC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 45, 78
BauI CACGAG 1 cut(s) 102
BbvI GCAGC 7 cut(s) 126, 129, 219, 222, 231, 253, 256
BccI CCATC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BcoDI GTCTC 2 cut(s) 185, 333
BcuI ACTAGT 1 cut(s) 184
BfaI CTAG 2 cut(s) 59, 185
BisI GCNGC 8 cut(s) 115, 118, 153, 208, 211, 220, 267, 270
BlsI GCNGC 8 cut(s) 116, 119, 154, 209, 212, 221, 268, 271
BmrI ACTGGG 1 cut(s) 308
BmsI GCATC 2 cut(s) 121, 166
BmuI ACTGGG 1 cut(s) 308
Bsa29I ATCGAT 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 185
Bse1I ACTGG 3 cut(s) 195, 300, 314
BseCI ATCGAT 1 cut(s) 129
BseGI GGATG 1 cut(s) 333
BseNI ACTGG 3 cut(s) 195, 300, 314
BseXI GCAGC 7 cut(s) 126, 129, 219, 222, 231, 253, 256
BsgI GTGCAG 1 cut(s) 255
BshVI ATCGAT 1 cut(s) 129
BsmAI GTCTC 2 cut(s) 185, 333
Bso31I GGTCTC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 2 cut(s) 152, 261
BspDI ATCGAT 1 cut(s) 129
BspHI TCATGA 1 cut(s) 138
BspPI GGATC 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 185
BsrI ACTGG 3 cut(s) 195, 300, 314
BssMI GATC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 45
BstF5I GGATG 1 cut(s) 333
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 2 cut(s) 185, 333
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 2 cut(s) 216, 219
BstV1I GCAGC 7 cut(s) 126, 129, 219, 222, 231, 253, 256
Bsu15I ATCGAT 1 cut(s) 129
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 1 cut(s) 333
BtsIMutI CAGTG 2 cut(s) 202, 293
CciI TCATGA 1 cut(s) 138
CfoI GCGC 1 cut(s) 27
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 1 cut(s) 62
CviAII CATG 2 cut(s) 98, 139
CviJI RGCY 4 cut(s) 5, 95, 155, 222
CviKI_1 RGCY 4 cut(s) 5, 95, 155, 222
CviQI GTAC 1 cut(s) 62
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 185
Eco32I GATATC 2 cut(s) 109, 202
EcoRV GATATC 2 cut(s) 109, 202
FaeI CATG 2 cut(s) 101, 142
FaiI YATR 4 cut(s) 99, 140, 281, 339
FatI CATG 2 cut(s) 97, 138
Fnu4HI GCNGC 8 cut(s) 115, 118, 153, 208, 211, 220, 267, 270
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 8 cut(s) 115, 118, 153, 208, 211, 220, 267, 270
FspBI CTAG 2 cut(s) 59, 185
GlaI GCGC 1 cut(s) 26
GluI GCNGC 8 cut(s) 115, 118, 153, 208, 211, 220, 267, 270
HhaI GCGC 1 cut(s) 27
Hin1II CATG 2 cut(s) 101, 142
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 2 cut(s) 253, 290
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 19
Hpy188III TCNNGA 3 cut(s) 139, 173, 190
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 2 cut(s) 76, 117
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 3 cut(s) 101, 179, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 216, 219
Hsp92II CATG 2 cut(s) 101, 142
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 4 cut(s) 208, 242, 281, 327
Lsp1109I GCAGC 7 cut(s) 126, 129, 219, 222, 231, 253, 256
LweI GCATC 2 cut(s) 121, 166
MaeI CTAG 2 cut(s) 59, 185
MaeIII GTNAC 2 cut(s) 10, 78
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 2 cut(s) 56, 80
MwoI GCNNNNNNNGC 2 cut(s) 216, 219
NdeII GATC 1 cut(s) 126
NlaIII CATG 2 cut(s) 101, 142
NmuCI GTSAC 1 cut(s) 78
PagI TCATGA 1 cut(s) 138
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 8 cut(s) 116, 119, 154, 209, 212, 221, 268, 271
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SatI GCNGC 8 cut(s) 115, 118, 153, 208, 211, 220, 267, 270
Sau3AI GATC 1 cut(s) 126
SchI GAGTC 1 cut(s) 284
SetI ASST 3 cut(s) 48, 97, 151
SfaNI GCATC 2 cut(s) 121, 166
SpeI ACTAGT 1 cut(s) 184
SsiI CCGC 2 cut(s) 152, 261
SspMI CTAG 2 cut(s) 59, 185
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 2 cut(s) 129, 189
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 253
TscAI CASTG 2 cut(s) 202, 300
TseFI GTSAC 1 cut(s) 78
TseI GCWGC 7 cut(s) 114, 117, 207, 210, 219, 266, 269
Tsp45I GTSAC 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 155
TspRI CASTG 2 cut(s) 202, 300
XspI CTAG 2 cut(s) 59, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.