FvH4_1g24810

Ribosome biogenesis protein NSA2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002786
Physical Location & Seq
Forward (+)
16590061 .. 16593595
3535 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24810.t1

Sequence Viewer

Length: 783 bp
ATGCCGCAGGGAGATTATATAGATCTTCACAGGAAGCGATATGGGTACAGACCTGATCATTTTGAGCGCAAGCGCAAGAAGGAAGCTCGTGAAGTCCACAAGCGCTCTGAAATCGCGCAAAAGGCTCTGGGTATTAAAGGCAAGATGTTTGCCAAGAAGCGCTATGCAGAAAAGGCTCTGATGAAGAAAACATTGGCTATGCATGAGGAGTCATCGACTAGGCACAAGGTTGATGAGGATGTTCATGAAGGAGCTGTTCCAGCATATCTGTTAGATCGTGACAATACGACACGAGCAAAGACTCTTAGCAATTCCATCAAGCAAAAACGGAAAGAGAAAGCTGGGAAATGGGAAGTCCCTCTGCCTAAGGTGAGGCCTGTCGCTGAAGATGAGATGTTTAAAGTTCTTAGAACAGGCAAACGCAAGACTAAGCAATGGAAGCGGATGATCACAAAAGCAACATTTGTGGGACCAGGTTTTACAAGGAAACCTCCCAAATATGAGCGATTTATCCGGCCCAGTGGTTTGCGATTCACCAAAGCTCATGTGACACACCCTGAACTCAAATGTACTTTTAACCTTGAGATCATTGGTGTGAAGAAAAACCCTAATGGTCAAATGTACACCTCTCTTGGTGTCTTGACCAAGGGAACCATCATTGAGGTGAACGTAAGCGAACTTGGTCTAGTCACACCTAACGGGAAAGTGGTATGGGGGAAATATGCACAGGTGACGAATAATCCAGAGAACGATGGATGCGTAAATGGGGTTCTGCTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S8e

Protein Analysis

261

Amino Acids

29.81

Weight (kDa)

10.11

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8e PF01201 35 - 259 4.1e-41 Ribosomal protein S8e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 116
AciI CCGC 2 cut(s) 5, 442
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 3 cut(s) 47, 571, 623
AfeI AGCGCT 2 cut(s) 104, 161
AjnI CCWGG 1 cut(s) 472
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 4 cut(s) 86, 254, 341, 542
AluI AGCT 4 cut(s) 86, 254, 341, 542
Aor51HI AGCGCT 2 cut(s) 104, 161
AoxI GGCC 2 cut(s) 374, 515
AspLEI GCGC 5 cut(s) 69, 75, 105, 118, 162
AspS9I GGNCC 2 cut(s) 470, 516
AsuHPI GGTGA 4 cut(s) 382, 526, 676, 742
AvaII GGWCC 1 cut(s) 470
AxyI CCTNAGG 1 cut(s) 366
BauI CACGAG 2 cut(s) 87, 291
BccI CCATC 3 cut(s) 323, 662, 746
BciT130I CCWGG 1 cut(s) 474
BclI TGATCA 2 cut(s) 55, 447
BfaI CTAG 2 cut(s) 219, 686
BfoI RGCGCY 2 cut(s) 106, 163
BglII AGATCT 1 cut(s) 22
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 474
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 2 cut(s) 470, 516
BmiI GGNNCC 2 cut(s) 471, 652
BmrFI CCNGG 1 cut(s) 474
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 1 cut(s) 746
BmuI ACTGGG 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 602
BsaJI CCNNGG 1 cut(s) 645
Bse1I ACTGG 1 cut(s) 519
Bse21I CCTNAGG 1 cut(s) 366
Bse3DI GCAATG 1 cut(s) 440
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 645
BseGI GGATG 3 cut(s) 244, 450, 761
BseMI GCAATG 1 cut(s) 440
BseNI ACTGG 1 cut(s) 519
BseRI GAGGAG 1 cut(s) 221
BseYI CCCAGC 1 cut(s) 341
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 2 cut(s) 376, 517
BsiSI CCGG 1 cut(s) 514
BslFI GGGAC 2 cut(s) 341, 483
BsmFI GGGAC 2 cut(s) 341, 483
BsnI GGCC 2 cut(s) 376, 517
Bsp1407I TGTACA 1 cut(s) 621
Bsp143I GATC 5 cut(s) 22, 55, 274, 447, 585
BspACI CCGC 2 cut(s) 5, 442
BspANI GGCC 2 cut(s) 376, 517
BspFNI CGCG 1 cut(s) 116
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 2 cut(s) 471, 652
BsrDI GCAATG 1 cut(s) 440
BsrGI TGTACA 1 cut(s) 621
BsrI ACTGG 1 cut(s) 519
BssECI CCNNGG 1 cut(s) 645
BssMI GATC 5 cut(s) 22, 55, 274, 447, 585
BssSI CACGAG 2 cut(s) 87, 291
BssT1I CCWWGG 1 cut(s) 645
Bst2BI CACGAG 2 cut(s) 87, 291
Bst2UI CCWGG 1 cut(s) 474
BstAUI TGTACA 1 cut(s) 621
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 4 cut(s) 305, 366, 407, 429
BstF5I GGATG 3 cut(s) 244, 450, 761
BstFNI CGCG 1 cut(s) 116
BstH2I RGCGCY 2 cut(s) 106, 163
BstHHI GCGC 5 cut(s) 69, 75, 105, 118, 162
BstKTI GATC 5 cut(s) 25, 58, 277, 450, 588
BstMBI GATC 5 cut(s) 22, 55, 274, 447, 585
BstMWI GCNNNNNNNGC 4 cut(s) 122, 173, 260, 439
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 472
BstUI CGCG 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
Bsu36I CCTNAGG 1 cut(s) 366
BsuRI GGCC 2 cut(s) 376, 517
BtsCI GGATG 3 cut(s) 244, 450, 761
BtsIMutI CAGTG 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 71
CciI TCATGA 1 cut(s) 244
CfoI GCGC 5 cut(s) 69, 75, 105, 118, 162
Cfr13I GGNCC 2 cut(s) 470, 516
CsiI ACCWGGT 1 cut(s) 472
Csp6I GTAC 3 cut(s) 46, 570, 622
CspCI CAANNNNNGTGG 2 cut(s) 447, 482
CviAII CATG 3 cut(s) 203, 245, 545
CviJI RGCY 9 cut(s) 86, 125, 176, 197, 254, 341, 376, 517, 542
CviKI_1 RGCY 9 cut(s) 86, 125, 176, 197, 254, 341, 376, 517, 542
CviQI GTAC 3 cut(s) 46, 570, 622
DdeI CTNAG 4 cut(s) 305, 366, 407, 429
DpnI GATC 5 cut(s) 24, 57, 276, 449, 587
DpnII GATC 5 cut(s) 22, 55, 274, 447, 585
DraI TTTAAA 1 cut(s) 400
Eco130I CCWWGG 1 cut(s) 645
Eco147I AGGCCT 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 470
Eco47III AGCGCT 2 cut(s) 104, 161
Eco57I CTGAAG 1 cut(s) 405
Eco81I CCTNAGG 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 645
EcoT22I ATGCAT 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 3 cut(s) 206, 248, 548
FaqI GGGAC 2 cut(s) 341, 483
FatI CATG 3 cut(s) 202, 244, 544
FbaI TGATCA 2 cut(s) 55, 447
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 3 cut(s) 251, 457, 768
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 2 cut(s) 219, 686
GlaI GCGC 5 cut(s) 68, 74, 104, 117, 161
GluI GCNGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 345
HaeII RGCGCY 2 cut(s) 106, 163
HaeIII GGCC 2 cut(s) 376, 517
HapII CCGG 1 cut(s) 514
HhaI GCGC 5 cut(s) 69, 75, 105, 118, 162
Hin1II CATG 3 cut(s) 206, 248, 548
Hin6I GCGC 5 cut(s) 67, 73, 103, 116, 160
HinP1I GCGC 5 cut(s) 67, 73, 103, 116, 160
HinfI GANTC 3 cut(s) 209, 301, 531
HpaII CCGG 1 cut(s) 514
HphI GGTGA 4 cut(s) 382, 526, 676, 742
Hpy166II GTNNAC 3 cut(s) 97, 624, 667
Hpy188I TCNGA 2 cut(s) 109, 180
Hpy188III TCNNGA 5 cut(s) 89, 245, 278, 640, 743
Hpy8I GTNNAC 3 cut(s) 97, 624, 667
HpyAV CCTTC 2 cut(s) 73, 242
HpyCH4IV ACGT 1 cut(s) 669
HpyCH4V TGCA 3 cut(s) 167, 202, 725
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 173, 260, 439
HpyF3I CTNAG 4 cut(s) 305, 366, 407, 429
HpySE526I ACGT 1 cut(s) 669
Hsp92II CATG 3 cut(s) 206, 248, 548
HspAI GCGC 5 cut(s) 67, 73, 103, 116, 160
Ksp22I TGATCA 2 cut(s) 55, 447
Kzo9I GATC 5 cut(s) 22, 55, 274, 447, 585
LmnI GCTCC 1 cut(s) 251
LweI GCATC 1 cut(s) 746
MabI ACCWGGT 1 cut(s) 472
MaeI CTAG 2 cut(s) 219, 686
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 4 cut(s) 278, 547, 688, 730
MalI GATC 5 cut(s) 24, 57, 276, 449, 587
MboI GATC 5 cut(s) 22, 55, 274, 447, 585
MboII GAAGA 4 cut(s) 17, 196, 398, 610
MflI RGATCY 1 cut(s) 22
MluCI AATT 1 cut(s) 310
MlyI GAGTC 2 cut(s) 218, 295
MnlI CCTC 7 cut(s) 199, 229, 366, 369, 501, 637, 655
Mph1103I ATGCAT 1 cut(s) 204
MseI TTAA 3 cut(s) 135, 399, 576
MslI CAYNNNNRTG 2 cut(s) 593, 662
MspI CCGG 1 cut(s) 514
MspR9I CCNGG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 474
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 4 cut(s) 122, 173, 260, 439
NdeII GATC 5 cut(s) 22, 55, 274, 447, 585
NlaIII CATG 3 cut(s) 206, 248, 548
NlaIV GGNNCC 2 cut(s) 471, 652
NmuCI GTSAC 4 cut(s) 278, 547, 688, 730
NsiI ATGCAT 1 cut(s) 204
PagI TCATGA 1 cut(s) 244
PceI AGGCCT 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 756
PfeI GAWTC 1 cut(s) 531
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 2 cut(s) 217, 295
PpsI GAGTC 2 cut(s) 217, 295
Psp6I CCWGG 1 cut(s) 472
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 2 cut(s) 471, 652
PspPI GGNCC 2 cut(s) 470, 516
PsrI GAACNNNNNNTAC 1 cut(s) 753
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 3 cut(s) 47, 571, 623
RsaNI GTAC 3 cut(s) 46, 570, 622
RseI CAYNNNNRTG 2 cut(s) 593, 662
SaqAI TTAA 3 cut(s) 135, 399, 576
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 5 cut(s) 22, 55, 274, 447, 585
Sau96I GGNCC 2 cut(s) 470, 516
SchI GAGTC 2 cut(s) 218, 295
ScrFI CCNGG 1 cut(s) 474
SexAI ACCWGGT 1 cut(s) 472
SfaNI GCATC 1 cut(s) 746
SinI GGWCC 1 cut(s) 470
SmiMI CAYNNNNRTG 2 cut(s) 593, 662
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 1 cut(s) 310
SseBI AGGCCT 1 cut(s) 376
SsiI CCGC 2 cut(s) 5, 442
SspMI CTAG 2 cut(s) 219, 686
StuI AGGCCT 1 cut(s) 376
StyD4I CCNGG 1 cut(s) 472
StyI CCWWGG 1 cut(s) 645
TaiI ACGT 1 cut(s) 672
TaqI TCGA 1 cut(s) 215
TasI AATT 1 cut(s) 310
TatI WGTACW 2 cut(s) 569, 621
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 531
Tru1I TTAA 3 cut(s) 135, 399, 576
Tru9I TTAA 3 cut(s) 135, 399, 576
TscAI CASTG 1 cut(s) 526
TseFI GTSAC 4 cut(s) 278, 547, 688, 730
Tsp45I GTSAC 4 cut(s) 278, 547, 688, 730
TspDTI ATGAA 3 cut(s) 197, 233, 261
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 1 cut(s) 526
VpaK11BI GGWCC 1 cut(s) 470
XspI CTAG 2 cut(s) 219, 686
Zsp2I ATGCAT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.