Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002786.1

Orthogroup ID

OG0002786

Physical Location & Seq

Genomic Coordinates Reverse (-)

5290 .. 7379

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002786.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgccgcagggagattatatagatcttcacaggaagcgatatgggtacagacctgaccactttgagcgcaagcgcaagaaggaggctcgtgaggtccacaaacgctctgaaattgcgcaaaaggctctgggtattaagggcaagatgtttgccaagaaacgctatgcagaaaaggctctaatgaagaaaacattggctatgcacgaggagtcatcaactagacacaaggttgatgatgatgttcatgaaggagctgttccaacatatctgttggatcgtgacaatacaacacgagcaaagactcttagcaattccatcaagcaaaaacggaaagagaaagctgggaaatgggaagtccctctgcctaaggtaaggcctgtggctgaagatgagatgtttaaagtgcttagaacgggcaaacgcaagactaagcaatggaagcggatgatcacaaaagccacatttgtgggacctggttttacaaggaaacctcccaagtatgagcggtttatccggcccagtgggttgcgattcactaaagctcacgtgacacaccctgaactcaaatgtacttttaacctcgagatcattggtgtgaagaaaaaccctaatggtcaaatgtacacctctcttggtgtcttgaccaagggaaccatcattgaggtgaatgtaagtgaacttggtctagtcacacctaatgggaaagttgtatgggggaaatatgctcaggtgacgaataatccagagaacgatggatgtgtaaatgcagttctgcttgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

260

Amino Acids

29.84

Weight (kDa)

10.11

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06360
fragaria_vesca	FvH4_1g24730 FvH4_1g24730 FvH4_1g24730 FvH4_1g24810
malus_domestica	MD05G1235300.v1.1 MD10G1211300.v1.1
prunus_persica	Prupe.4G241300_v2.0.a1
pyrus_communis	pycom05g21220 pycom10g17960
rosa_chinensis	RchiOBHm_Chr2g0122251 RchiOBHm_Chr4g0409741 RchiOBHm_Chr7g0216581 RchiOBHm_Chr7g0216591
rosa_laevigata	RLG00000008527 RLG00000018672
rosa_multiflora	Rmu_co8402305.1_g000001 Rmu_co8495649.1_g000001 Rmu_sc0002786.1_g000003 Rmu_sc0009638.1_g000011 Rmu_sc0009638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121730 Rroxscaffold_3G00243120 Rroxscaffold_5G00354300
rosa_rugosa	Rorug02G0237400 Rorug04G0096500
rosa_samantha	Rh2AG296500 Rh2BG305000 Rh2CG283400 Rh2DG320400 Rh4AG157900 Rh4CG168400 Rh4DG152300 Rh7AG300300 Rh7CG318800
rosa_wichuraiana	Rw2G023590 Rw4G012910 Rw4G013010 Rw7G025520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	117
AccBSI	CCGCTC	1 cut(s)	505
AciI	CCGC	3 cut(s)	5, 442, 505
AclWI	GGATC	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	405
AcvI	CACGTG	1 cut(s)	547
AfaI	GTAC	3 cut(s)	47, 571, 623
AjnI	CCWGG	1 cut(s)	472
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	3 cut(s)	254, 341, 542
AluI	AGCT	3 cut(s)	254, 341, 542
AlwI	GGATC	1 cut(s)	282
Ama87I	CYCGRG	1 cut(s)	581
AoxI	GGCC	2 cut(s)	374, 515
AspLEI	GCGC	3 cut(s)	69, 75, 118
AspS9I	GGNCC	3 cut(s)	94, 470, 516
AsuHPI	GGTGA	2 cut(s)	676, 742
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	2 cut(s)	94, 470
AxyI	CCTNAGG	1 cut(s)	366
BauI	CACGAG	3 cut(s)	87, 203, 291
BbrPI	CACGTG	1 cut(s)	547
BccI	CCATC	3 cut(s)	323, 662, 746
BciT130I	CCWGG	1 cut(s)	474
BclI	TGATCA	1 cut(s)	447
BfaI	CTAG	2 cut(s)	219, 686
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	2 cut(s)	94, 470
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	3 cut(s)	94, 470, 516
BmiI	GGNNCC	2 cut(s)	471, 652
BmrFI	CCNGG	1 cut(s)	474
BmrI	ACTGGG	1 cut(s)	513
BmuI	ACTGGG	1 cut(s)	513
Bpu10I	CCTNAGC	1 cut(s)	726
BsaAI	YACGTR	1 cut(s)	547
BsaJI	CCNNGG	1 cut(s)	645
Bse1I	ACTGG	1 cut(s)	519
Bse21I	CCTNAGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	440
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	2 cut(s)	450, 761
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	1 cut(s)	740
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	2 cut(s)	376, 517
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	2 cut(s)	341, 483
BsmFI	GGGAC	2 cut(s)	341, 483
BsnI	GGCC	2 cut(s)	376, 517
BsoBI	CYCGRG	1 cut(s)	581
Bsp1407I	TGTACA	1 cut(s)	621
Bsp143I	GATC	4 cut(s)	22, 274, 447, 585
BspACI	CCGC	3 cut(s)	5, 442, 505
BspANI	GGCC	2 cut(s)	376, 517
BspCNI	CTCAG	1 cut(s)	739
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	471, 652
BspPI	GGATC	1 cut(s)	282
BsrBI	CCGCTC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	440
BsrGI	TGTACA	1 cut(s)	621
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	1 cut(s)	645
BssMI	GATC	4 cut(s)	22, 274, 447, 585
BssSI	CACGAG	3 cut(s)	87, 203, 291
BssT1I	CCWWGG	1 cut(s)	645
Bst2BI	CACGAG	3 cut(s)	87, 203, 291
Bst2UI	CCWGG	1 cut(s)	474
BstAUI	TGTACA	1 cut(s)	621
BstBAI	YACGTR	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	5 cut(s)	305, 366, 407, 429, 726
BstF5I	GGATG	2 cut(s)	450, 761
BstHHI	GCGC	3 cut(s)	69, 75, 118
BstKTI	GATC	4 cut(s)	25, 277, 450, 588
BstMBI	GATC	4 cut(s)	22, 274, 447, 585
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 173, 439
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	472
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	22
Bsu36I	CCTNAGG	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	376, 517
BtsCI	GGATG	2 cut(s)	450, 761
BtsIMutI	CAGTG	1 cut(s)	526
Cac8I	GCNNGC	1 cut(s)	71
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	3 cut(s)	69, 75, 118
Cfr13I	GGNCC	3 cut(s)	94, 470, 516
CsiI	ACCWGGT	1 cut(s)	472
Csp6I	GTAC	3 cut(s)	46, 570, 622
CviAII	CATG	1 cut(s)	245
CviQI	GTAC	3 cut(s)	46, 570, 622
DdeI	CTNAG	5 cut(s)	305, 366, 407, 429, 726
DpnI	GATC	4 cut(s)	24, 276, 449, 587
DpnII	GATC	4 cut(s)	22, 274, 447, 585
DraI	TTTAAA	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	645
Eco147I	AGGCCT	1 cut(s)	376
Eco47I	GGWCC	2 cut(s)	94, 470
Eco57I	CTGAAG	1 cut(s)	405
Eco72I	CACGTG	1 cut(s)	547
Eco81I	CCTNAGG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	645
FaeI	CATG	1 cut(s)	248
FaqI	GGGAC	2 cut(s)	341, 483
FatI	CATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	447
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	2 cut(s)	457, 768
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	219, 686
FspI	TGCGCA	1 cut(s)	117
GlaI	GCGC	3 cut(s)	68, 74, 117
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	376, 517
HapII	CCGG	1 cut(s)	514
HhaI	GCGC	3 cut(s)	69, 75, 118
Hin1II	CATG	1 cut(s)	248
Hin6I	GCGC	3 cut(s)	67, 73, 116
HinP1I	GCGC	3 cut(s)	67, 73, 116
HinfI	GANTC	3 cut(s)	209, 301, 531
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	2 cut(s)	676, 742
Hpy166II	GTNNAC	3 cut(s)	97, 624, 677
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	6 cut(s)	89, 245, 278, 583, 640, 743
Hpy8I	GTNNAC	3 cut(s)	97, 624, 677
HpyAV	CCTTC	2 cut(s)	73, 242
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	3 cut(s)	167, 202, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 173, 439
HpyF3I	CTNAG	5 cut(s)	305, 366, 407, 429, 726
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	1 cut(s)	248
HspAI	GCGC	3 cut(s)	67, 73, 116
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	4 cut(s)	22, 274, 447, 585
LmnI	GCTCC	1 cut(s)	251
MabI	ACCWGGT	1 cut(s)	472
MaeI	CTAG	2 cut(s)	219, 686
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	4 cut(s)	278, 547, 688, 730
MalI	GATC	4 cut(s)	24, 276, 449, 587
MbiI	CCGCTC	1 cut(s)	505
MboI	GATC	4 cut(s)	22, 274, 447, 585
MboII	GAAGA	4 cut(s)	17, 196, 398, 610
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	2 cut(s)	111, 310
MlyI	GAGTC	2 cut(s)	218, 295
MmeI	TCCRAC	2 cut(s)	252, 284
MnlI	CCTC	8 cut(s)	76, 85, 199, 369, 501, 590, 637, 655
MseI	TTAA	3 cut(s)	135, 399, 576
MslI	CAYNNNNRTG	3 cut(s)	464, 593, 662
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	3 cut(s)	122, 173, 439
NdeII	GATC	4 cut(s)	22, 274, 447, 585
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	2 cut(s)	471, 652
NmuCI	GTSAC	4 cut(s)	278, 547, 688, 730
NsbI	TGCGCA	1 cut(s)	117
OliI	CACNNNNGTG	1 cut(s)	464
PaeR7I	CTCGAG	1 cut(s)	581
PagI	TCATGA	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	531
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	2 cut(s)	217, 295
PmaCI	CACGTG	1 cut(s)	547
PmlI	CACGTG	1 cut(s)	547
PpsI	GAGTC	2 cut(s)	217, 295
Ppu21I	YACGTR	1 cut(s)	547
PpuMI	RGGWCCY	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	472
PspCI	CACGTG	1 cut(s)	547
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	2 cut(s)	471, 652
PspPI	GGNCC	3 cut(s)	94, 470, 516
PspPPI	RGGWCCY	1 cut(s)	470
PsrI	GAACNNNNNNTAC	1 cut(s)	753
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	3 cut(s)	47, 571, 623
RsaNI	GTAC	3 cut(s)	46, 570, 622
RseI	CAYNNNNRTG	3 cut(s)	464, 593, 662
SaqAI	TTAA	3 cut(s)	135, 399, 576
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	4 cut(s)	22, 274, 447, 585
Sau96I	GGNCC	3 cut(s)	94, 470, 516
SchI	GAGTC	2 cut(s)	218, 295
ScrFI	CCNGG	1 cut(s)	474
SexAI	ACCWGGT	1 cut(s)	472
Sfr274I	CTCGAG	1 cut(s)	581
SinI	GGWCC	2 cut(s)	94, 470
SlaI	CTCGAG	1 cut(s)	581
SmiMI	CAYNNNNRTG	3 cut(s)	464, 593, 662
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	2 cut(s)	111, 310
SseBI	AGGCCT	1 cut(s)	376
SsiI	CCGC	3 cut(s)	5, 442, 505
SspMI	CTAG	2 cut(s)	219, 686
StuI	AGGCCT	1 cut(s)	376
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	1 cut(s)	645
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	1 cut(s)	582
TasI	AATT	2 cut(s)	111, 310
TatI	WGTACW	2 cut(s)	569, 621
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	531
Tru1I	TTAA	3 cut(s)	135, 399, 576
Tru9I	TTAA	3 cut(s)	135, 399, 576
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	4 cut(s)	278, 547, 688, 730
Tsp45I	GTSAC	4 cut(s)	278, 547, 688, 730
TspDTI	ATGAA	3 cut(s)	197, 233, 261
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	526
VpaK11BI	GGWCC	2 cut(s)	94, 470
XhoI	CTCGAG	1 cut(s)	581
XspI	CTAG	2 cut(s)	219, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.