RchiOBHm_Chr7g0216591

Ribosome biogenesis protein NSA2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002786
Physical Location & Seq
Forward (+)
34201960 .. 34202605
646 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19380

Sequence Viewer

Length: 447 bp
ATGATCACAAAAGCCACATTTATGGGACCTGGTTTTACAAGGAAACCTCCAAAATATGAGCCATTTATCCGGCCCAGTGGATTGCGAATCACTAAAGCTCATGTGACTCACCCTGAACTCAAATGTACTTTCAACCTCGAGATCATTGGTGTGAAGAAAAACCCTAATGGTCAAATGTATACCTCTTTTGGTGTCTTGACCAAGGGAACCATCATTGACCCATCTCAGTCTTGTGTGAATGTAAGTGAACTTGGTCTAGTCACACCTAACGGGAAAGTTGTGACAAATAATCCAAAGAATGATGCATGGATGCGTAAATGCAGTTCTACTTGTTTAAGAGGATTAACTGTCGAGCTTTCGGGTGACTCTTCTGATCTTGCATTGCACGCCTCTGCCTTATCATGCGATAGCCAACTAGCCTTCACCCAAAATATGGCTTTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S8e

Protein Analysis

148

Amino Acids

16.06

Weight (kDa)

9.22

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8e PF01201 26 - 101 1.9e-17 Ribosomal protein S8e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 433
AccI GTMKAC 1 cut(s) 179
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 433
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 98, 355
AluI AGCT 2 cut(s) 98, 355
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 26, 72
AsuHPI GGTGA 3 cut(s) 101, 374, 415
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 1 cut(s) 26
BccI CCATC 2 cut(s) 218, 229
BciT130I CCWGG 1 cut(s) 30
BclI TGATCA 1 cut(s) 3
BfaI CTAG 2 cut(s) 257, 416
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 26, 72
BmiI GGNNCC 2 cut(s) 27, 208
BmrFI CCNGG 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 2 cut(s) 292, 300
BmuI ACTGGG 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse1I ACTGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 380
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMI GCAATG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 75
BshFI GGCC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 1 cut(s) 70
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 433
BsmFI GGGAC 1 cut(s) 39
BsnI GGCC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 137
Bsp143I GATC 3 cut(s) 3, 141, 373
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 27, 208
BsrDI GCAATG 1 cut(s) 380
BsrI ACTGG 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 3 cut(s) 3, 141, 373
BssNAI GTATAC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 201
Bst1107I GTATAC 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 373
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 315
BstKTI GATC 3 cut(s) 6, 144, 376
BstMBI GATC 3 cut(s) 3, 141, 373
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstXI CCANNNNNNTGG 1 cut(s) 22
BstZ17I GTATAC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 387
Cfr13I GGNCC 2 cut(s) 26, 72
CsiI ACCWGGT 1 cut(s) 28
Csp6I GTAC 1 cut(s) 126
CviAII CATG 3 cut(s) 101, 306, 402
CviJI RGCY 8 cut(s) 14, 61, 73, 98, 355, 411, 419, 437
CviKI_1 RGCY 8 cut(s) 14, 61, 73, 98, 355, 411, 419, 437
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 1 cut(s) 225
DpnI GATC 3 cut(s) 5, 143, 375
DpnII GATC 3 cut(s) 3, 141, 373
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 26
Eco88I CYCGRG 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 3 cut(s) 104, 309, 405
FaiI YATR 7 cut(s) 23, 57, 102, 180, 307, 403, 434
FaqI GGGAC 1 cut(s) 39
FatI CATG 3 cut(s) 100, 305, 401
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 179
FokI GGATG 1 cut(s) 322
FspBI CTAG 2 cut(s) 257, 416
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 70
Hin1II CATG 3 cut(s) 104, 309, 405
HinfI GANTC 3 cut(s) 87, 106, 365
HpaII CCGG 1 cut(s) 70
HphI GGTGA 3 cut(s) 101, 374, 415
Hpy166II GTNNAC 2 cut(s) 180, 248
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 2 cut(s) 139, 196
Hpy8I GTNNAC 2 cut(s) 180, 248
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4V TGCA 4 cut(s) 305, 321, 380, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 3 cut(s) 104, 309, 405
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 141, 373
LpnPI CCDG 5 cut(s) 15, 42, 83, 88, 126
LweI GCATC 2 cut(s) 292, 300
MabI ACCWGGT 1 cut(s) 28
MaeI CTAG 2 cut(s) 257, 416
MaeIII GTNAC 4 cut(s) 103, 259, 280, 362
MalI GATC 3 cut(s) 5, 143, 375
MboI GATC 3 cut(s) 3, 141, 373
MboII GAAGA 2 cut(s) 166, 360
MlyI GAGTC 2 cut(s) 100, 359
MnlI CCTC 5 cut(s) 57, 146, 193, 332, 400
Mph1103I ATGCAT 1 cut(s) 307
MseI TTAA 3 cut(s) 335, 344, 440
MslI CAYNNNNRTG 2 cut(s) 20, 149
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 3 cut(s) 3, 141, 373
NlaIII CATG 3 cut(s) 104, 309, 405
NlaIV GGNNCC 2 cut(s) 27, 208
NmuCI GTSAC 4 cut(s) 103, 259, 280, 362
NsiI ATGCAT 1 cut(s) 307
PaeR7I CTCGAG 1 cut(s) 137
PfeI GAWTC 1 cut(s) 87
PflMI CCANNNNNTGG 1 cut(s) 433
PleI GAGTC 2 cut(s) 100, 359
PpsI GAGTC 2 cut(s) 100, 359
PpuMI RGGWCCY 1 cut(s) 26
Psp5II RGGWCCY 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 27, 208
PspPI GGNCC 2 cut(s) 26, 72
PspPPI RGGWCCY 1 cut(s) 26
PsrI GAACNNNNNNTAC 2 cut(s) 307, 339
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
RseI CAYNNNNRTG 2 cut(s) 20, 149
SaqAI TTAA 3 cut(s) 335, 344, 440
Sau3AI GATC 3 cut(s) 3, 141, 373
Sau96I GGNCC 2 cut(s) 26, 72
SchI GAGTC 2 cut(s) 100, 359
ScrFI CCNGG 1 cut(s) 30
SetI ASST 7 cut(s) 31, 49, 100, 138, 185, 268, 357
SexAI ACCWGGT 1 cut(s) 28
SfaNI GCATC 2 cut(s) 292, 300
Sfr274I CTCGAG 1 cut(s) 137
SinI GGWCC 1 cut(s) 26
SlaI CTCGAG 1 cut(s) 137
SmiMI CAYNNNNRTG 2 cut(s) 20, 149
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SspMI CTAG 2 cut(s) 257, 416
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 349
TaqI TCGA 2 cut(s) 138, 351
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 3 cut(s) 335, 344, 440
Tru9I TTAA 3 cut(s) 335, 344, 440
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 4 cut(s) 103, 259, 280, 362
Tsp45I GTSAC 4 cut(s) 103, 259, 280, 362
TspRI CASTG 1 cut(s) 82
Van91I CCANNNNNTGG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 26
XhoI CTCGAG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 179
XspI CTAG 2 cut(s) 257, 416
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.