Rorug02G0237400

Ribosome biogenesis protein NSA2 homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
23738672 .. 23739429
758 bp
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UTR
Exon/CDS
Intron
Rorug02G0237400.1

Sequence Viewer

Length: 201 bp
ATGGAGGAGATTGCCTGTGAGGTGGAAGCAACTGCTGCTGCCTACCACAATTTCCTTAATGTTTCTCTGCTTGGTTCCAAGTGCATTGAGGAGGAGGACCTCATGAGGTTCATGATTGAGGAAGAGGTGGAAGTTGCATTTTTGCTGAAGAGCTCTAAAAGATTAGCTGGTGAAGGTCTACAACCCTCGCAGAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

66

Amino Acids

7.39

Weight (kDa)

4.46

Isoelectric Point (pI)

81.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 167
AluBI AGCT 2 cut(s) 153, 167
AluI AGCT 2 cut(s) 153, 167
Alw21I GWGCWC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 35, 38
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 2 cut(s) 22, 25
BisI GCNGC 2 cut(s) 36, 39
BlsI GCNGC 2 cut(s) 37, 40
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 76
BseRI GAGGAG 3 cut(s) 20, 104, 107
BseXI GCAGC 2 cut(s) 22, 25
BsiHKAI GWGCWC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 155
BspHI TCATGA 2 cut(s) 102, 111
BspLI GGNNCC 1 cut(s) 76
BspQI GCTCTTC 1 cut(s) 143
Bst6I CTCTTC 2 cut(s) 117, 143
BstAPI GCANNNNNTGC 1 cut(s) 35
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 22, 25
CciI TCATGA 2 cut(s) 102, 111
Cfr13I GGNCC 1 cut(s) 97
CviAII CATG 2 cut(s) 103, 112
CviJI RGCY 2 cut(s) 153, 167
CviKI_1 RGCY 2 cut(s) 153, 167
Eam1104I CTCTTC 2 cut(s) 117, 143
EarI CTCTTC 2 cut(s) 117, 143
Ecl136II GAGCTC 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 155
FaeI CATG 2 cut(s) 106, 115
FaiI YATR 2 cut(s) 104, 113
FatI CATG 2 cut(s) 102, 111
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 36, 39
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 36, 39
GluI GCNGC 2 cut(s) 36, 39
Hin1II CATG 2 cut(s) 106, 115
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 179
Hpy188III TCNNGA 2 cut(s) 103, 112
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 167, 187
HpyCH4V TGCA 2 cut(s) 84, 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Hsp92II CATG 2 cut(s) 106, 115
LguI GCTCTTC 1 cut(s) 143
LpnPI CCDG 2 cut(s) 28, 153
Lsp1109I GCAGC 2 cut(s) 22, 25
MboII GAAGA 2 cut(s) 134, 160
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 1 cut(s) 49
MnlI CCTC 9 cut(s) 13, 82, 85, 88, 99, 110, 112, 118, 196
MseI TTAA 2 cut(s) 57, 199
MwoI GCNNNNNNNGC 1 cut(s) 35
NlaIII CATG 2 cut(s) 106, 115
NlaIV GGNNCC 1 cut(s) 76
PagI TCATGA 2 cut(s) 102, 111
PciSI GCTCTTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 37, 40
PpuMI RGGWCCY 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 97
PspPPI RGGWCCY 1 cut(s) 97
SacI GAGCTC 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 57, 199
SatI GCNGC 2 cut(s) 36, 39
Sau96I GGNCC 1 cut(s) 97
SduI GDGCHC 1 cut(s) 155
SetI ASST 7 cut(s) 24, 102, 110, 129, 155, 169, 178
SgeI CNNG 6 cut(s) 27, 83, 91, 115, 124, 180
SinI GGWCC 1 cut(s) 97
Sse9I AATT 1 cut(s) 49
SstI GAGCTC 1 cut(s) 155
TasI AATT 1 cut(s) 49
Tru1I TTAA 2 cut(s) 57, 199
Tru9I TTAA 2 cut(s) 57, 199
TseI GCWGC 2 cut(s) 35, 38
TspDTI ATGAA 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.