Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009638.1

Orthogroup ID

OG0002786

Physical Location & Seq

Genomic Coordinates Forward (+)

41359 .. 42659

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009638.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggaacaggctctggttatcaagggcaagatgtttgccaagaaactctatgcagaaaaggctctaatgaagaaaacattggctatgcacgaggagtcatcgactaggcacaaggttgatgatgatgttcatgaaggagctgttccaacttatctattggatcgtgacaatacaacacgagcaaaagtgaggcctgtggctgaagatgagatgtttaaagtgcttagaacgggcaaacgcaagactaagcaatggaagcggatgatcacaaaagccacatatgtgggacctggttttacaaggaaacctcccaagtatgagctatttatccggcccagtggattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

115

Amino Acids

13.31

Weight (kDa)

10.03

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06360
fragaria_vesca	FvH4_1g24730 FvH4_1g24730 FvH4_1g24730 FvH4_1g24810
malus_domestica	MD05G1235300.v1.1 MD10G1211300.v1.1
prunus_persica	Prupe.4G241300_v2.0.a1
pyrus_communis	pycom05g21220 pycom10g17960
rosa_chinensis	RchiOBHm_Chr2g0122251 RchiOBHm_Chr4g0409741 RchiOBHm_Chr7g0216581 RchiOBHm_Chr7g0216591
rosa_laevigata	RLG00000008527 RLG00000018672
rosa_multiflora	Rmu_co8402305.1_g000001 Rmu_co8495649.1_g000001 Rmu_sc0002786.1_g000003 Rmu_sc0009638.1_g000011 Rmu_sc0009638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121730 Rroxscaffold_3G00243120 Rroxscaffold_5G00354300
rosa_rugosa	Rorug02G0237400 Rorug04G0096500
rosa_samantha	Rh2AG296500 Rh2BG305000 Rh2CG283400 Rh2DG320400 Rh4AG157900 Rh4CG168400 Rh4DG152300 Rh7AG300300 Rh7CG318800
rosa_wichuraiana	Rw2G023590 Rw4G012910 Rw4G013010 Rw7G025520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	259
AclWI	GGATC	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AleI	CACNNNNGTG	1 cut(s)	281
AluBI	AGCT	2 cut(s)	140, 322
AluI	AGCT	2 cut(s)	140, 322
AlwI	GGATC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	2 cut(s)	191, 332
AspS9I	GGNCC	2 cut(s)	287, 333
AvaII	GGWCC	1 cut(s)	287
BauI	CACGAG	2 cut(s)	89, 177
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	264
BfaI	CTAG	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	287, 333
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	330
BmuI	ACTGGG	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	336
Bse3DI	GCAATG	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	267
BseMI	GCAATG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	193, 334
BsiSI	CCGG	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	2 cut(s)	193, 334
Bsp143I	GATC	2 cut(s)	160, 264
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	2 cut(s)	193, 334
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	336
BssMI	GATC	2 cut(s)	160, 264
BssSI	CACGAG	2 cut(s)	89, 177
Bst2BI	CACGAG	2 cut(s)	89, 177
Bst2UI	CCWGG	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	224, 246
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	2 cut(s)	163, 267
BstMBI	GATC	2 cut(s)	160, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 256
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	193, 334
BtsCI	GGATG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	343
CaiI	CAGNNNCTG	1 cut(s)	13
CciI	TCATGA	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	287, 333
CsiI	ACCWGGT	1 cut(s)	289
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	9 cut(s)	11, 62, 83, 140, 193, 200, 275, 322, 334
CviKI_1	RGCY	9 cut(s)	11, 62, 83, 140, 193, 200, 275, 322, 334
DdeI	CTNAG	2 cut(s)	224, 246
DpnI	GATC	2 cut(s)	162, 266
DpnII	GATC	2 cut(s)	160, 264
DraI	TTTAAA	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	289
FaeI	CATG	1 cut(s)	134
FaiI	YATR	6 cut(s)	51, 86, 132, 280, 282, 318
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	1 cut(s)	130
FauNDI	CATATG	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	264
FokI	GGATG	1 cut(s)	274
FspBI	CTAG	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	193, 334
HapII	CCGG	1 cut(s)	331
Hin1II	CATG	1 cut(s)	134
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	1 cut(s)	331
Hpy188III	TCNNGA	2 cut(s)	131, 164
HpyAV	CCTTC	1 cut(s)	128
HpyCH4V	TGCA	2 cut(s)	53, 88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 256
HpyF3I	CTNAG	2 cut(s)	224, 246
Hsp92II	CATG	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	160, 264
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	4 cut(s)	207, 276, 303, 344
MabI	ACCWGGT	1 cut(s)	289
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	2 cut(s)	162, 266
MboI	GATC	2 cut(s)	160, 264
MboII	GAAGA	2 cut(s)	82, 215
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	3 cut(s)	85, 183, 318
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	281
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	59, 256
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	2 cut(s)	160, 264
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	164
OliI	CACNNNNGTG	1 cut(s)	281
PagI	TCATGA	1 cut(s)	130
PceI	AGGCCT	1 cut(s)	193
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	287, 333
PspPPI	RGGWCCY	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	160, 264
Sau96I	GGNCC	2 cut(s)	287, 333
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	5 cut(s)	117, 142, 292, 310, 324
SexAI	ACCWGGT	1 cut(s)	289
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	281
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	1 cut(s)	259
SspMI	CTAG	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	289
TaqI	TCGA	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	3 cut(s)	83, 119, 147
TspRI	CASTG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	287
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.