Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002786

Physical Location & Seq

Genomic Coordinates Forward (+)

21098316 .. 21100378

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTTTGTGATTATGCTATGTCAGCCGCAGGGAGATTACATAGACCTTCACAGGAAGCGGTATGGGTACCGACCTGACCATTTCGAGCGAAAGCGCAAGAAGGAGGCTCGTCTTGTCCATAAGCGTTCTGAGACTGCTCAGAAGGCTCTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGCTATGCTGAAAAGGCTCTCATGAAGAAAACGTTGATTATGCATGAGGAGTCATCAACTAGGCGCAAGGTGGATGATGATGTTCATGAAGGCTCTATTCCCGCATATCTGATCGATCGTGTCAATACAACACGTGCAAAAATTCTGAACAACACCATTAAGCAAAAGCGGAAGGAGAAAGCTGGGAAATGGGATGTCCCACTGCCCAAGGTGAGGCCTGTGGCTGAAGATGAGATGTTCAAAATTCTTAGATCTGGAAAACGCAAGACCAAGCAATGGAAGAGGATGGTCACAAAAGCTACATTTGTGGGACCTGGTTTCACGAGGAAACCTCCTAAGTATGAGCGATTTATCCGTCCCAGTGGGTTGCGATTCACCAAAGCTCACGTGACACACCCTGAACTTAAAGCCACTTTTAACCTTGAGATCATTGGTGTGAAGAAGAATCCTAATGGTCAAATGTATACATCTCTTGGTGTCTTGACCAAGGGAACCATCATTGAGGTGAATGTCAGTGAACTGGGTCTAGTCACACCTGCTGGGAAAGTTGTGTGGGGGAAGTATGCTCAGGTGACGAATAATCCAGAGAACGACGGGTGTGTAAATGCAGTTCTGCTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

268

Amino Acids

30.64

Weight (kDa)

10.23

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06360
fragaria_vesca	FvH4_1g24730 FvH4_1g24730 FvH4_1g24730 FvH4_1g24810
malus_domestica	MD05G1235300.v1.1 MD10G1211300.v1.1
prunus_persica	Prupe.4G241300_v2.0.a1
pyrus_communis	pycom05g21220 pycom10g17960
rosa_chinensis	RchiOBHm_Chr2g0122251 RchiOBHm_Chr4g0409741 RchiOBHm_Chr7g0216581 RchiOBHm_Chr7g0216591
rosa_laevigata	RLG00000008527 RLG00000018672
rosa_multiflora	Rmu_co8402305.1_g000001 Rmu_co8495649.1_g000001 Rmu_sc0002786.1_g000003 Rmu_sc0009638.1_g000011 Rmu_sc0009638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121730 Rroxscaffold_3G00243120 Rroxscaffold_5G00354300
rosa_rugosa	Rorug02G0237400 Rorug04G0096500
rosa_samantha	Rh2AG296500 Rh2BG305000 Rh2CG283400 Rh2DG320400 Rh4AG157900 Rh4CG168400 Rh4DG152300 Rh7AG300300 Rh7CG318800
rosa_wichuraiana	Rw2G023590 Rw4G012910 Rw4G013010 Rw7G025520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	724
Acc36I	ACCTGC	1 cut(s)	724
Acc65I	GGTACC	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	66
AccB7I	CCANNNNNTGG	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	644
AciI	CCGC	4 cut(s)	26, 58, 282, 349
AclI	AACGTT	1 cut(s)	212
AcsI	RAATTY	2 cut(s)	321, 423
AcuI	CTGAAG	1 cut(s)	426
AcvI	CACGTG	2 cut(s)	314, 568
AfaI	GTAC	1 cut(s)	68
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	393, 456
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	493
AluBI	AGCT	3 cut(s)	362, 479, 563
AluI	AGCT	3 cut(s)	362, 479, 563
Alw26I	GTCTC	1 cut(s)	125
Aor51HI	AGCGCT	1 cut(s)	182
AoxI	GGCC	1 cut(s)	395
ApoI	RAATTY	2 cut(s)	321, 423
Asp718I	GGTACC	1 cut(s)	66
AspLEI	GCGC	3 cut(s)	96, 183, 246
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	4 cut(s)	403, 547, 697, 763
AvaII	GGWCC	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	502
BbrPI	CACGTG	2 cut(s)	314, 568
BccI	CCATC	2 cut(s)	460, 683
BciT130I	CCWGG	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	2 cut(s)	240, 707
BfoI	RGCGCY	1 cut(s)	184
BfuAI	ACCTGC	1 cut(s)	724
BglII	AGATCT	1 cut(s)	431
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	495
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	3 cut(s)	68, 492, 673
BmrFI	CCNGG	1 cut(s)	495
BmrI	ACTGGG	2 cut(s)	534, 710
BmuI	ACTGGG	2 cut(s)	534, 710
BplI	GAGNNNNNCTC	2 cut(s)	496, 528
Bpu10I	CCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	623
Bsa29I	ATCGAT	1 cut(s)	294
BsaAI	YACGTR	2 cut(s)	314, 568
BsaJI	CCNNGG	2 cut(s)	387, 666
Bsc4I	CCNNNNNNNGG	2 cut(s)	393, 456
Bse1I	ACTGG	2 cut(s)	540, 705
Bse3DI	GCAATG	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	495
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	387, 666
BseGI	GGATG	3 cut(s)	259, 379, 471
BseLI	CCNNNNNNNGG	2 cut(s)	393, 456
BseMI	GCAATG	1 cut(s)	461
BseMII	CTCAG	3 cut(s)	120, 152, 761
BseNI	ACTGG	2 cut(s)	540, 705
BseRI	GAGGAG	1 cut(s)	242
BseYI	CCCAGC	2 cut(s)	362, 719
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	1 cut(s)	397
BshNI	GGYRCC	1 cut(s)	66
BshVI	ATCGAT	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	298
BslFI	GGGAC	3 cut(s)	362, 504, 522
BslI	CCNNNNNNNGG	2 cut(s)	393, 456
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	3 cut(s)	362, 504, 522
BsnI	GGCC	1 cut(s)	397
Bsp143I	GATC	4 cut(s)	291, 295, 431, 606
BspACI	CCGC	4 cut(s)	26, 58, 282, 349
BspANI	GGCC	1 cut(s)	397
BspCNI	CTCAG	3 cut(s)	121, 151, 760
BspDI	ATCGAT	1 cut(s)	294
BspHI	TCATGA	2 cut(s)	201, 265
BspLI	GGNNCC	3 cut(s)	68, 492, 673
BspMI	ACCTGC	1 cut(s)	724
BspT107I	GGYRCC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	461
BsrI	ACTGG	2 cut(s)	540, 705
BssECI	CCNNGG	2 cut(s)	387, 666
BssMI	GATC	4 cut(s)	291, 295, 431, 606
BssNAI	GTATAC	1 cut(s)	645
BssSI	CACGAG	1 cut(s)	502
BssT1I	CCWWGG	2 cut(s)	387, 666
Bst1107I	GTATAC	1 cut(s)	645
Bst2BI	CACGAG	1 cut(s)	502
Bst2UI	CCWGG	1 cut(s)	495
Bst6I	CTCTTC	1 cut(s)	455
BstBAI	YACGTR	2 cut(s)	314, 568
BstDEI	CTNAG	6 cut(s)	129, 138, 174, 428, 516, 747
BstF5I	GGATG	3 cut(s)	259, 379, 471
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	3 cut(s)	96, 183, 246
BstKTI	GATC	4 cut(s)	294, 298, 434, 609
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	4 cut(s)	291, 295, 431, 606
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 143, 194
BstNI	CCWGG	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	493
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
BstZ17I	GTATAC	1 cut(s)	645
Bsu15I	ATCGAT	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	397
BsuTUI	ATCGAT	1 cut(s)	294
BtsCI	GGATG	3 cut(s)	259, 379, 471
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	3 cut(s)	380, 547, 700
BveI	ACCTGC	1 cut(s)	724
CciI	TCATGA	2 cut(s)	201, 265
CfoI	GCGC	3 cut(s)	96, 183, 246
Cfr13I	GGNCC	1 cut(s)	491
ClaI	ATCGAT	1 cut(s)	294
CsiI	ACCWGGT	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	3 cut(s)	202, 224, 266
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	6 cut(s)	129, 138, 174, 428, 516, 747
DpnI	GATC	4 cut(s)	293, 297, 433, 608
DpnII	GATC	4 cut(s)	291, 295, 431, 606
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco130I	CCWWGG	2 cut(s)	387, 666
Eco147I	AGGCCT	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	491
Eco47III	AGCGCT	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	426
Eco72I	CACGTG	2 cut(s)	314, 568
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	387, 666
EcoT22I	ATGCAT	1 cut(s)	225
ErhI	CCWWGG	2 cut(s)	387, 666
FaeI	CATG	3 cut(s)	205, 227, 269
FaqI	GGGAC	3 cut(s)	362, 504, 522
FatI	CATG	3 cut(s)	201, 223, 265
FauI	CCCGC	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	644
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	3 cut(s)	266, 386, 478
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	2 cut(s)	240, 707
GlaI	GCGC	3 cut(s)	95, 182, 245
GluI	GCNGC	1 cut(s)	26
GsaI	CCCAGC	2 cut(s)	366, 723
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	397
HhaI	GCGC	3 cut(s)	96, 183, 246
Hin1II	CATG	3 cut(s)	205, 227, 269
Hin6I	GCGC	3 cut(s)	94, 181, 244
HinP1I	GCGC	3 cut(s)	94, 181, 244
HinfI	GANTC	3 cut(s)	230, 552, 625
HphI	GGTGA	4 cut(s)	403, 547, 697, 763
Hpy166II	GTNNAC	2 cut(s)	645, 698
Hpy188I	TCNGA	4 cut(s)	130, 141, 291, 327
Hpy188III	TCNNGA	6 cut(s)	202, 266, 435, 502, 661, 764
Hpy8I	GTNNAC	2 cut(s)	645, 698
Hpy99I	CGWCG	1 cut(s)	776
HpyAV	CCTTC	5 cut(s)	56, 94, 136, 263, 346
HpyCH4IV	ACGT	3 cut(s)	212, 313, 567
HpyCH4V	TGCA	3 cut(s)	223, 317, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 143, 194
HpyF3I	CTNAG	6 cut(s)	129, 138, 174, 428, 516, 747
HpySE526I	ACGT	3 cut(s)	212, 313, 567
Hsp92II	CATG	3 cut(s)	205, 227, 269
HspAI	GCGC	3 cut(s)	94, 181, 244
KpnI	GGTACC	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	291, 295, 431, 606
MabI	ACCWGGT	1 cut(s)	493
MaeI	CTAG	2 cut(s)	240, 707
MaeII	ACGT	3 cut(s)	212, 313, 567
MaeIII	GTNAC	4 cut(s)	469, 568, 709, 751
MalI	GATC	4 cut(s)	293, 297, 433, 608
MboI	GATC	4 cut(s)	291, 295, 431, 606
MboII	GAAGA	5 cut(s)	217, 419, 472, 631, 634
MflI	RGATCY	1 cut(s)	431
MluCI	AATT	2 cut(s)	321, 423
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	7 cut(s)	97, 220, 387, 456, 498, 522, 676
Mph1103I	ATGCAT	1 cut(s)	225
MseI	TTAA	4 cut(s)	339, 585, 597, 802
MslI	CAYNNNNRTG	2 cut(s)	614, 683
MspR9I	CCNGG	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	495
MwoI	GCNNNNNNNGC	3 cut(s)	22, 143, 194
NdeII	GATC	4 cut(s)	291, 295, 431, 606
NlaIII	CATG	3 cut(s)	205, 227, 269
NlaIV	GGNNCC	3 cut(s)	68, 492, 673
NmuCI	GTSAC	4 cut(s)	469, 568, 709, 751
NsiI	ATGCAT	1 cut(s)	225
PagI	TCATGA	2 cut(s)	201, 265
PaqCI	CACCTGC	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	552, 625
PflMI	CCANNNNNTGG	1 cut(s)	456
PkrI	GCNGC	1 cut(s)	27
Ple19I	CGATCG	1 cut(s)	298
PleI	GAGTC	1 cut(s)	238
PmaCI	CACGTG	2 cut(s)	314, 568
PmlI	CACGTG	2 cut(s)	314, 568
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	2 cut(s)	314, 568
PpuMI	RGGWCCY	1 cut(s)	491
Psp1406I	AACGTT	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	493
PspCI	CACGTG	2 cut(s)	314, 568
PspFI	CCCAGC	2 cut(s)	362, 719
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	3 cut(s)	68, 492, 673
PspPI	GGNCC	1 cut(s)	491
PspPPI	RGGWCCY	1 cut(s)	491
PsrI	GAACNNNNNNTAC	1 cut(s)	774
PsuI	RGATCY	1 cut(s)	431
PvuI	CGATCG	1 cut(s)	298
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	2 cut(s)	614, 683
SaqAI	TTAA	4 cut(s)	339, 585, 597, 802
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	4 cut(s)	291, 295, 431, 606
Sau96I	GGNCC	1 cut(s)	491
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	495
SexAI	ACCWGGT	1 cut(s)	493
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	2 cut(s)	614, 683
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	2 cut(s)	321, 423
SseBI	AGGCCT	1 cut(s)	397
SsiI	CCGC	4 cut(s)	26, 58, 282, 349
SspMI	CTAG	2 cut(s)	240, 707
StuI	AGGCCT	1 cut(s)	397
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	2 cut(s)	387, 666
TaiI	ACGT	3 cut(s)	215, 316, 570
TaqI	TCGA	2 cut(s)	84, 294
TasI	AATT	2 cut(s)	321, 423
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	2 cut(s)	552, 625
Tru1I	TTAA	4 cut(s)	339, 585, 597, 802
Tru9I	TTAA	4 cut(s)	339, 585, 597, 802
TscAI	CASTG	3 cut(s)	387, 547, 700
TseFI	GTSAC	4 cut(s)	469, 568, 709, 751
Tsp45I	GTSAC	4 cut(s)	469, 568, 709, 751
TspDTI	ATGAA	3 cut(s)	218, 254, 282
TspGWI	ACGGA	1 cut(s)	524
TspRI	CASTG	3 cut(s)	387, 547, 700
Van91I	CCANNNNNTGG	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	2 cut(s)	321, 423
XmiI	GTMKAC	1 cut(s)	644
XspI	CTAG	2 cut(s)	240, 707
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.