Rh2AG296500

Ribosome biogenesis protein NSA2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002786
Physical Location & Seq
Forward (+)
36656394 .. 36661439
5046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG296500.1

Sequence Viewer

Length: 639 bp
ATGTTTGCCAAGAAACGCTATGCAGAAAAGGCTCTAATGAAGAAAACATTGGCTATGCACGAGGAGTCATCAACTAGACACAAGGTTGATGATGATGTTCATGAAGGAGCTGTTCCAACATATCTGTTGGATCGTGACAATACAACACGAGCAAAGACTCTTAGCAATTCCATCAAGCAAAAACGGAAAGAGAAAGCTGGGAAATGGGAAGTCCCTCTGCCTAAGGTAAGGCCTGTGGCTGAAGATGAGATGTTTAAAGTGCTTAGAACGGGCAAACGCAAGACTAAGCAATGGAAGCGGATGATCACAAAAGCCACATTTGTGGGACCTGGTTTTACAAGGAAACCTCCCAAGTATGAGCGGTTTATCCGGCCCAGTGGGTTGCGATTCACTAAAGCTCACGTGACACACCCTGAACTCAAATGTACTTTTAACCTCGAGATCATTGGTGTGAAGAAAAACCCTAATGGTCAAATGTACACCTCACTTGGTGTCTTGACCAAGGGAACCATCATTGAGGTGAATGTAAGTGAACTTGGTCTAGTCACACCTAATGGGAAAGTTGTATGGGGGAAATATGCTCAGGTGACGAATAATCCAGAGAACGATGGATGTGTAAATGCAGTTCTGCTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S8e

Protein Analysis

212

Amino Acids

24.03

Weight (kDa)

10.03

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8e PF01201 6 - 211 8.5e-38 Ribosomal protein S8e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 361
AciI CCGC 2 cut(s) 298, 361
AclWI GGATC 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 261
AcvI CACGTG 1 cut(s) 403
AdeI CACNNNGTG 1 cut(s) 491
AfaI GTAC 2 cut(s) 427, 479
AjnI CCWGG 1 cut(s) 328
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AleI CACNNNNGTG 1 cut(s) 320
AluBI AGCT 3 cut(s) 110, 197, 398
AluI AGCT 3 cut(s) 110, 197, 398
AlwI GGATC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 2 cut(s) 230, 371
AspS9I GGNCC 2 cut(s) 326, 372
AsuHPI GGTGA 2 cut(s) 532, 598
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 1 cut(s) 326
AxyI CCTNAGG 1 cut(s) 222
BauI CACGAG 2 cut(s) 59, 147
BbrPI CACGTG 1 cut(s) 403
BccI CCATC 3 cut(s) 179, 518, 602
BciT130I CCWGG 1 cut(s) 330
BclI TGATCA 1 cut(s) 303
BfaI CTAG 2 cut(s) 75, 542
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 2 cut(s) 326, 372
BmiI GGNNCC 2 cut(s) 327, 508
BmrFI CCNGG 1 cut(s) 330
BmrI ACTGGG 1 cut(s) 369
BmuI ACTGGG 1 cut(s) 369
Bpu10I CCTNAGC 1 cut(s) 582
BsaAI YACGTR 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 501
Bse1I ACTGG 1 cut(s) 375
Bse21I CCTNAGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 501
BseGI GGATG 2 cut(s) 306, 617
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 596
BseNI ACTGG 1 cut(s) 375
BseRI GAGGAG 1 cut(s) 77
BseYI CCCAGC 1 cut(s) 197
BshFI GGCC 2 cut(s) 232, 373
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 1 cut(s) 370
BslFI GGGAC 2 cut(s) 197, 339
BsmFI GGGAC 2 cut(s) 197, 339
BsnI GGCC 2 cut(s) 232, 373
BsoBI CYCGRG 1 cut(s) 437
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 3 cut(s) 130, 303, 441
BspACI CCGC 2 cut(s) 298, 361
BspANI GGCC 2 cut(s) 232, 373
BspCNI CTCAG 1 cut(s) 595
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 327, 508
BspPI GGATC 1 cut(s) 138
BsrBI CCGCTC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 296
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 1 cut(s) 501
BssMI GATC 3 cut(s) 130, 303, 441
BssSI CACGAG 2 cut(s) 59, 147
BssT1I CCWWGG 1 cut(s) 501
Bst2BI CACGAG 2 cut(s) 59, 147
Bst2UI CCWGG 1 cut(s) 330
BstAUI TGTACA 1 cut(s) 477
BstBAI YACGTR 1 cut(s) 403
BstDEI CTNAG 5 cut(s) 161, 222, 263, 285, 582
BstF5I GGATG 2 cut(s) 306, 617
BstKTI GATC 3 cut(s) 133, 306, 444
BstMBI GATC 3 cut(s) 130, 303, 441
BstMWI GCNNNNNNNGC 2 cut(s) 29, 295
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 328
BstXI CCANNNNNNTGG 1 cut(s) 322
Bsu36I CCTNAGG 1 cut(s) 222
BsuRI GGCC 2 cut(s) 232, 373
BtsCI GGATG 2 cut(s) 306, 617
BtsIMutI CAGTG 1 cut(s) 382
CciI TCATGA 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 326, 372
CsiI ACCWGGT 1 cut(s) 328
Csp6I GTAC 2 cut(s) 426, 478
CviAII CATG 1 cut(s) 101
CviJI RGCY 9 cut(s) 32, 53, 110, 197, 232, 239, 314, 373, 398
CviKI_1 RGCY 9 cut(s) 32, 53, 110, 197, 232, 239, 314, 373, 398
CviQI GTAC 2 cut(s) 426, 478
DdeI CTNAG 5 cut(s) 161, 222, 263, 285, 582
DpnI GATC 3 cut(s) 132, 305, 443
DpnII GATC 3 cut(s) 130, 303, 441
DraI TTTAAA 1 cut(s) 256
DraIII CACNNNGTG 1 cut(s) 491
Eco130I CCWWGG 1 cut(s) 501
Eco147I AGGCCT 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 261
Eco72I CACGTG 1 cut(s) 403
Eco81I CCTNAGG 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 1 cut(s) 104
FaiI YATR 7 cut(s) 21, 56, 102, 121, 357, 568, 579
FaqI GGGAC 2 cut(s) 197, 339
FatI CATG 1 cut(s) 100
FbaI TGATCA 1 cut(s) 303
FokI GGATG 2 cut(s) 313, 624
FspBI CTAG 2 cut(s) 75, 542
GsaI CCCAGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 232, 373
HapII CCGG 1 cut(s) 370
Hin1II CATG 1 cut(s) 104
HinfI GANTC 3 cut(s) 65, 157, 387
HpaII CCGG 1 cut(s) 370
HphI GGTGA 2 cut(s) 532, 598
Hpy166II GTNNAC 2 cut(s) 480, 533
Hpy188III TCNNGA 5 cut(s) 101, 134, 439, 496, 599
Hpy8I GTNNAC 2 cut(s) 480, 533
HpyAV CCTTC 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 3 cut(s) 23, 58, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 295
HpyF3I CTNAG 5 cut(s) 161, 222, 263, 285, 582
HpySE526I ACGT 1 cut(s) 402
Hsp92II CATG 1 cut(s) 104
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 3 cut(s) 130, 303, 441
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 9 cut(s) 183, 246, 315, 342, 383, 388, 426, 569, 612
MabI ACCWGGT 1 cut(s) 328
MaeI CTAG 2 cut(s) 75, 542
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 4 cut(s) 134, 403, 544, 586
MalI GATC 3 cut(s) 132, 305, 443
MbiI CCGCTC 1 cut(s) 361
MboI GATC 3 cut(s) 130, 303, 441
MboII GAAGA 3 cut(s) 52, 254, 466
MluCI AATT 1 cut(s) 166
MlyI GAGTC 2 cut(s) 74, 151
MmeI TCCRAC 2 cut(s) 108, 140
MnlI CCTC 6 cut(s) 55, 225, 357, 446, 493, 511
MseI TTAA 2 cut(s) 255, 432
MslI CAYNNNNRTG 3 cut(s) 320, 449, 518
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 2 cut(s) 29, 295
NdeII GATC 3 cut(s) 130, 303, 441
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 2 cut(s) 327, 508
NmuCI GTSAC 4 cut(s) 134, 403, 544, 586
OliI CACNNNNGTG 1 cut(s) 320
PaeR7I CTCGAG 1 cut(s) 437
PagI TCATGA 1 cut(s) 100
PceI AGGCCT 1 cut(s) 232
PfeI GAWTC 1 cut(s) 387
PleI GAGTC 2 cut(s) 73, 151
PmaCI CACGTG 1 cut(s) 403
PmlI CACGTG 1 cut(s) 403
PpsI GAGTC 2 cut(s) 73, 151
Ppu21I YACGTR 1 cut(s) 403
PpuMI RGGWCCY 1 cut(s) 326
Psp5II RGGWCCY 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 328
PspCI CACGTG 1 cut(s) 403
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 2 cut(s) 327, 508
PspPI GGNCC 2 cut(s) 326, 372
PspPPI RGGWCCY 1 cut(s) 326
PsrI GAACNNNNNNTAC 1 cut(s) 609
RsaI GTAC 2 cut(s) 427, 479
RsaNI GTAC 2 cut(s) 426, 478
RseI CAYNNNNRTG 3 cut(s) 320, 449, 518
SaqAI TTAA 2 cut(s) 255, 432
Sau3AI GATC 3 cut(s) 130, 303, 441
Sau96I GGNCC 2 cut(s) 326, 372
SchI GAGTC 2 cut(s) 74, 151
ScrFI CCNGG 1 cut(s) 330
SexAI ACCWGGT 1 cut(s) 328
Sfr274I CTCGAG 1 cut(s) 437
SinI GGWCC 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 437
SmiMI CAYNNNNRTG 3 cut(s) 320, 449, 518
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 1 cut(s) 166
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 2 cut(s) 298, 361
SspMI CTAG 2 cut(s) 75, 542
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 501
TaiI ACGT 1 cut(s) 405
TaqI TCGA 1 cut(s) 438
TasI AATT 1 cut(s) 166
TatI WGTACW 2 cut(s) 425, 477
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 2 cut(s) 255, 432
Tru9I TTAA 2 cut(s) 255, 432
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 4 cut(s) 134, 403, 544, 586
Tsp45I GTSAC 4 cut(s) 134, 403, 544, 586
TspDTI ATGAA 3 cut(s) 53, 89, 117
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 326
XhoI CTCGAG 1 cut(s) 437
XspI CTAG 2 cut(s) 75, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.