Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002786

Physical Location & Seq

Genomic Coordinates Forward (+)

23893497 .. 23895648

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g21220.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCCGCAGGGAGATTACATAGACCTCCACAGGAAGCGGTATGGGTACCGACCTGACCACTTCGAGCGAAAGCGCAAGAAGGAGGCTCGTCTCGTTCATAAGCGTTCTGAAATTGCTCAGAAGGCTCTGGGTATCAAGGGTAAGATGTTCGCTAAGAAGCGCTATGCTGAAAAGGCTCTCATGAAGAAAACGTTGATGATGCATGAGGAGTCATCAACTAGGCGCAAGGTGGATGATGATGTTCATGAAGGCTCTATTCCAGCATATCTGCTGGATCGTGACACTACAACACGTGCGAAAATTTTGAACAACACCATTAAGCAAAAGCGGAAGGAGAAAGCTGGGAAATGGGAAGTCCCCCTGCCTAAGGTAAGGCCTGTGGCTGAAGATGAGATGTTCAAAATTCTTAGATCTGGAAAACGCAAGACCAAGCAATGGAAGAGGATGGTCACAAAAGCCACATTTGTGGGACCTGGTTTCACAAGAAAACCTCCCAAGTATGAGCGATTTATTCGTCCCAGTGGGTTACGATTCACCAAATCTCATGTGACACATCCTGAACTTAAAGCCACTTTTAACCTTGAGATCATTGGCGTGAAGAAGAATCCTAACGGTCAAATGTATACATCTCTTGGTGTCTTGACCAAGGGAACCATCATTGAGGTGAATGTCAGTGAACTAGGTCTAGTCACACCTGCCGGGAAAGTTGTATGGGGGAAGTATGCTCAGGTGACAAATAATCCAGAGAACGACGGGTGTGTTAATGCAGTTCTGCTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

261

Amino Acids

29.87

Weight (kDa)

10.23

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06360
fragaria_vesca	FvH4_1g24730 FvH4_1g24730 FvH4_1g24730 FvH4_1g24810
malus_domestica	MD05G1235300.v1.1 MD10G1211300.v1.1
prunus_persica	Prupe.4G241300_v2.0.a1
pyrus_communis	pycom05g21220 pycom10g17960
rosa_chinensis	RchiOBHm_Chr2g0122251 RchiOBHm_Chr4g0409741 RchiOBHm_Chr7g0216581 RchiOBHm_Chr7g0216591
rosa_laevigata	RLG00000008527 RLG00000018672
rosa_multiflora	Rmu_co8402305.1_g000001 Rmu_co8495649.1_g000001 Rmu_sc0002786.1_g000003 Rmu_sc0009638.1_g000011 Rmu_sc0009638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121730 Rroxscaffold_3G00243120 Rroxscaffold_5G00354300
rosa_rugosa	Rorug02G0237400 Rorug04G0096500
rosa_samantha	Rh2AG296500 Rh2BG305000 Rh2CG283400 Rh2DG320400 Rh4AG157900 Rh4CG168400 Rh4DG152300 Rh7AG300300 Rh7CG318800
rosa_wichuraiana	Rw2G023590 Rw4G012910 Rw4G013010 Rw7G025520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	703
Acc36I	ACCTGC	1 cut(s)	703
Acc65I	GGTACC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	45
AccB7I	CCANNNNNTGG	1 cut(s)	435
AccI	GTMKAC	1 cut(s)	623
AciI	CCGC	3 cut(s)	5, 37, 328
AclI	AACGTT	1 cut(s)	191
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	300, 402
AcuI	CTGAAG	1 cut(s)	405
AcvI	CACGTG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	47
AfeI	AGCGCT	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	367, 435
AflIII	ACRYGT	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	307, 400
AjnI	CCWGG	1 cut(s)	472
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	282
Aor51HI	AGCGCT	1 cut(s)	161
AoxI	GGCC	1 cut(s)	374
ApoI	RAATTY	2 cut(s)	300, 402
Asp718I	GGTACC	1 cut(s)	45
AspLEI	GCGC	3 cut(s)	75, 162, 225
AspS9I	GGNCC	1 cut(s)	470
AsuC2I	CCSGG	1 cut(s)	700
AsuHPI	GGTGA	3 cut(s)	526, 676, 742
AvaII	GGWCC	1 cut(s)	470
AxyI	CCTNAGG	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	45
BbrPI	CACGTG	1 cut(s)	293
BccI	CCATC	2 cut(s)	439, 662
BciT130I	CCWGG	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	3 cut(s)	219, 680, 686
BfoI	RGCGCY	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	703
BglII	AGATCT	1 cut(s)	410
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	2 cut(s)	474, 700
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	3 cut(s)	47, 471, 652
BmrFI	CCNGG	2 cut(s)	474, 700
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	513
Bpu10I	CCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	700
BsaAI	YACGTR	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 435
Bse1I	ACTGG	1 cut(s)	519
Bse21I	CCTNAGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	440
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	3 cut(s)	238, 450, 553
BseLI	CCNNNNNNNGG	2 cut(s)	367, 435
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	2 cut(s)	131, 740
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	1 cut(s)	376
BshNI	GGYRCC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	699
BslFI	GGGAC	3 cut(s)	341, 483, 501
BslI	CCNNNNNNNGG	2 cut(s)	367, 435
BsmAI	GTCTC	1 cut(s)	95
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	3 cut(s)	341, 483, 501
BsnI	GGCC	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	274, 410, 585
BspACI	CCGC	3 cut(s)	5, 37, 328
BspANI	GGCC	1 cut(s)	376
BspCNI	CTCAG	2 cut(s)	130, 739
BspHI	TCATGA	2 cut(s)	180, 244
BspLI	GGNNCC	3 cut(s)	47, 471, 652
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	1 cut(s)	645
BssMI	GATC	3 cut(s)	274, 410, 585
BssNAI	GTATAC	1 cut(s)	624
BssT1I	CCWWGG	1 cut(s)	645
Bst1107I	GTATAC	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	614
Bst6I	CTCTTC	1 cut(s)	434
BstBAI	YACGTR	1 cut(s)	293
BstDEI	CTNAG	5 cut(s)	117, 153, 366, 407, 726
BstENI	CCTNNNNNAGG	1 cut(s)	365
BstF5I	GGATG	3 cut(s)	238, 450, 553
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	3 cut(s)	75, 162, 225
BstKTI	GATC	3 cut(s)	277, 413, 588
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	3 cut(s)	274, 410, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 173
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	2 cut(s)	472, 698
BstX2I	RGATCY	1 cut(s)	410
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	410
BstZ17I	GTATAC	1 cut(s)	624
Bsu36I	CCTNAGG	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	376
BtsCI	GGATG	3 cut(s)	238, 450, 553
BtsIMutI	CAGTG	2 cut(s)	526, 679
BveI	ACCTGC	1 cut(s)	703
CciI	TCATGA	2 cut(s)	180, 244
CfoI	GCGC	3 cut(s)	75, 162, 225
Cfr13I	GGNCC	1 cut(s)	470
CsiI	ACCWGGT	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	4 cut(s)	181, 203, 245, 545
CviJI	RGCY	9 cut(s)	86, 125, 176, 252, 341, 376, 383, 458, 569
CviKI_1	RGCY	9 cut(s)	86, 125, 176, 252, 341, 376, 383, 458, 569
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	5 cut(s)	117, 153, 366, 407, 726
DpnI	GATC	3 cut(s)	276, 412, 587
DpnII	GATC	3 cut(s)	274, 410, 585
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	645
Eco147I	AGGCCT	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	470
Eco47III	AGCGCT	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	405
Eco72I	CACGTG	1 cut(s)	293
Eco81I	CCTNAGG	1 cut(s)	366
EcoNI	CCTNNNNNAGG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	645
EcoT22I	ATGCAT	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	645
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	4 cut(s)	184, 206, 248, 548
FaqI	GGGAC	3 cut(s)	341, 483, 501
FatI	CATG	4 cut(s)	180, 202, 244, 544
FblI	GTMKAC	1 cut(s)	623
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	3 cut(s)	245, 457, 540
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	3 cut(s)	219, 680, 686
GlaI	GCGC	3 cut(s)	74, 161, 224
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	1 cut(s)	376
HapII	CCGG	1 cut(s)	699
HhaI	GCGC	3 cut(s)	75, 162, 225
Hin1II	CATG	4 cut(s)	184, 206, 248, 548
Hin6I	GCGC	3 cut(s)	73, 160, 223
HinP1I	GCGC	3 cut(s)	73, 160, 223
HinfI	GANTC	3 cut(s)	209, 531, 604
HpaII	CCGG	1 cut(s)	699
HphI	GGTGA	3 cut(s)	526, 676, 742
Hpy166II	GTNNAC	2 cut(s)	624, 677
Hpy188I	TCNGA	2 cut(s)	109, 120
Hpy188III	TCNNGA	7 cut(s)	181, 245, 278, 414, 557, 640, 743
Hpy8I	GTNNAC	2 cut(s)	624, 677
Hpy99I	CGWCG	1 cut(s)	755
HpyAV	CCTTC	4 cut(s)	73, 115, 242, 325
HpyCH4III	ACNGT	1 cut(s)	614
HpyCH4IV	ACGT	2 cut(s)	191, 292
HpyCH4V	TGCA	2 cut(s)	202, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 173
HpyF3I	CTNAG	5 cut(s)	117, 153, 366, 407, 726
HpySE526I	ACGT	2 cut(s)	191, 292
Hsp92II	CATG	4 cut(s)	184, 206, 248, 548
HspAI	GCGC	3 cut(s)	73, 160, 223
KpnI	GGTACC	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	274, 410, 585
LweI	GCATC	1 cut(s)	189
MabI	ACCWGGT	1 cut(s)	472
MaeI	CTAG	3 cut(s)	219, 680, 686
MaeII	ACGT	2 cut(s)	191, 292
MaeIII	GTNAC	6 cut(s)	278, 448, 525, 547, 688, 730
MalI	GATC	3 cut(s)	276, 412, 587
MboI	GATC	3 cut(s)	274, 410, 585
MboII	GAAGA	5 cut(s)	196, 398, 451, 610, 613
MflI	RGATCY	1 cut(s)	410
MluCI	AATT	3 cut(s)	111, 300, 402
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	6 cut(s)	35, 76, 199, 435, 501, 655
Mph1103I	ATGCAT	1 cut(s)	204
MseI	TTAA	5 cut(s)	318, 564, 576, 762, 781
MslI	CAYNNNNRTG	3 cut(s)	464, 593, 662
MspI	CCGG	1 cut(s)	699
MspR9I	CCNGG	2 cut(s)	474, 700
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	2 cut(s)	122, 173
NciI	CCSGG	1 cut(s)	700
NdeII	GATC	3 cut(s)	274, 410, 585
NlaIII	CATG	4 cut(s)	184, 206, 248, 548
NlaIV	GGNNCC	3 cut(s)	47, 471, 652
NmuCI	GTSAC	5 cut(s)	278, 448, 547, 688, 730
NsiI	ATGCAT	1 cut(s)	204
OliI	CACNNNNGTG	1 cut(s)	464
PagI	TCATGA	2 cut(s)	180, 244
PaqCI	CACCTGC	1 cut(s)	703
PceI	AGGCCT	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	531, 604
PflMI	CCANNNNNTGG	1 cut(s)	435
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	217
PmaCI	CACGTG	1 cut(s)	293
PmlI	CACGTG	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	217
Ppu21I	YACGTR	1 cut(s)	293
PpuMI	RGGWCCY	1 cut(s)	470
Psp1406I	AACGTT	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	472
PspCI	CACGTG	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	3 cut(s)	47, 471, 652
PspPI	GGNCC	1 cut(s)	470
PspPPI	RGGWCCY	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	3 cut(s)	464, 593, 662
SaqAI	TTAA	5 cut(s)	318, 564, 576, 762, 781
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	274, 410, 585
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	474, 700
SexAI	ACCWGGT	1 cut(s)	472
SfaNI	GCATC	1 cut(s)	189
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	3 cut(s)	464, 593, 662
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	3 cut(s)	111, 300, 402
SseBI	AGGCCT	1 cut(s)	376
SsiI	CCGC	3 cut(s)	5, 37, 328
SspMI	CTAG	3 cut(s)	219, 680, 686
StuI	AGGCCT	1 cut(s)	376
StyD4I	CCNGG	2 cut(s)	472, 698
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	1 cut(s)	614
TaiI	ACGT	2 cut(s)	194, 295
TaqI	TCGA	1 cut(s)	63
TasI	AATT	3 cut(s)	111, 300, 402
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	531, 604
Tru1I	TTAA	5 cut(s)	318, 564, 576, 762, 781
Tru9I	TTAA	5 cut(s)	318, 564, 576, 762, 781
TscAI	CASTG	2 cut(s)	526, 679
TseFI	GTSAC	5 cut(s)	278, 448, 547, 688, 730
Tsp45I	GTSAC	5 cut(s)	278, 448, 547, 688, 730
TspDTI	ATGAA	4 cut(s)	86, 197, 233, 261
TspRI	CASTG	2 cut(s)	526, 679
Van91I	CCANNNNNTGG	1 cut(s)	435
VpaK11BI	GGWCC	1 cut(s)	470
XagI	CCTNNNNNAGG	1 cut(s)	365
XapI	RAATTY	2 cut(s)	300, 402
XmiI	GTMKAC	1 cut(s)	623
XspI	CTAG	3 cut(s)	219, 680, 686
Zsp2I	ATGCAT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.