Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8495649.1

Orthogroup ID

OG0002786

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1971

Gene Structure 1971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8495649.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 763 bp

agatcttcacaggaagcgatatgggtacagacctgaccactttgagcgcaagcgcaagaaggaggctcgtgaggtccacaagcgctctgaaatcgcccaaaaggctctgggtattaaaggcaagatgtttgccaagaaacgctatgcagaaaaggctctaatgaagaaaacattggctatgcatgaggagtcatcgactaggcacaaggttgatgatgatgttcatgaaggagctgttccaacatatttgttggatcgtgacaatacaacacgagcaaagactcttagcaattccatcaagcaaaaacggaaagagaaagctgggaaatgggaagtccctctgcctaaggtaaggcctgtggctgaagatgagatgtttaaagtgcttcgaacaggcaaacgcaagactaagcaatggaagcggatgatcacaaaagccacatttgttggacctggttttaccaggaaacctcccaaatatgagcgatttatccggcccagtggattgcgattcactaaagctcatgtgacacaccctgaactcaaatgtacttttaaccttgagattatcggtgtgaagaaaaaccccaatggtcaaatgtacacctctcttggtgtcttgaccaagggaaccatcattgaggtgaatgtaagtgaacttggtcttgtcacacctaacgggaaagttgtatgggggaaatatgctcaggtgacaaataatccagagaacgatggatgtgtaaatgcagttctgcttgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

253

Amino Acids

29.03

Weight (kDa)

10.18

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06360
fragaria_vesca	FvH4_1g24730 FvH4_1g24730 FvH4_1g24730 FvH4_1g24810
malus_domestica	MD05G1235300.v1.1 MD10G1211300.v1.1
prunus_persica	Prupe.4G241300_v2.0.a1
pyrus_communis	pycom05g21220 pycom10g17960
rosa_chinensis	RchiOBHm_Chr2g0122251 RchiOBHm_Chr4g0409741 RchiOBHm_Chr7g0216581 RchiOBHm_Chr7g0216591
rosa_laevigata	RLG00000008527 RLG00000018672
rosa_multiflora	Rmu_co8402305.1_g000001 Rmu_co8495649.1_g000001 Rmu_sc0002786.1_g000003 Rmu_sc0009638.1_g000011 Rmu_sc0009638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121730 Rroxscaffold_3G00243120 Rroxscaffold_5G00354300
rosa_rugosa	Rorug02G0237400 Rorug04G0096500
rosa_samantha	Rh2AG296500 Rh2BG305000 Rh2CG283400 Rh2DG320400 Rh4AG157900 Rh4CG168400 Rh4DG152300 Rh7AG300300 Rh7CG318800
rosa_wichuraiana	Rw2G023590 Rw4G012910 Rw4G013010 Rw7G025520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	385
AfaI	GTAC	3 cut(s)	27, 551, 603
AfeI	AGCGCT	1 cut(s)	84
AjnI	CCWGG	2 cut(s)	452, 462
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	3 cut(s)	234, 321, 522
AluI	AGCT	3 cut(s)	234, 321, 522
AlwI	GGATC	1 cut(s)	262
Aor51HI	AGCGCT	1 cut(s)	84
AoxI	GGCC	2 cut(s)	354, 495
AspLEI	GCGC	3 cut(s)	49, 55, 85
AspS9I	GGNCC	3 cut(s)	74, 450, 496
AsuHPI	GGTGA	2 cut(s)	656, 722
AsuII	TTCGAA	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	74, 450
AxyI	CCTNAGG	1 cut(s)	346
BauI	CACGAG	2 cut(s)	67, 271
BccI	CCATC	3 cut(s)	303, 642, 726
BciT130I	CCWGG	2 cut(s)	454, 464
BclI	TGATCA	1 cut(s)	427
BfaI	CTAG	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	86
BglI	GCCNNNNNGGC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	2
Bme1390I	CCNGG	2 cut(s)	454, 464
Bme18I	GGWCC	2 cut(s)	74, 450
BmgT120I	GGNCC	3 cut(s)	74, 450, 496
BmiI	GGNNCC	1 cut(s)	632
BmrFI	CCNGG	2 cut(s)	454, 464
BmrI	ACTGGG	1 cut(s)	493
BmuI	ACTGGG	1 cut(s)	493
Bpu10I	CCTNAGC	1 cut(s)	706
Bpu14I	TTCGAA	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	582
BsaJI	CCNNGG	1 cut(s)	625
Bse1I	ACTGG	1 cut(s)	499
Bse21I	CCTNAGG	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	454, 464
BseDI	CCNNGG	1 cut(s)	625
BseGI	GGATG	2 cut(s)	430, 741
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	201
BseYI	CCCAGC	1 cut(s)	321
BshFI	GGCC	2 cut(s)	356, 497
BsiSI	CCGG	1 cut(s)	494
BslFI	GGGAC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	356, 497
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1407I	TGTACA	1 cut(s)	601
Bsp143I	GATC	3 cut(s)	2, 254, 427
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	2 cut(s)	356, 497
BspCNI	CTCAG	1 cut(s)	719
BspHI	TCATGA	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	632
BspPI	GGATC	1 cut(s)	262
BspT104I	TTCGAA	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	420
BsrGI	TGTACA	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	499
BssECI	CCNNGG	1 cut(s)	625
BssMI	GATC	3 cut(s)	2, 254, 427
BssSI	CACGAG	2 cut(s)	67, 271
BssT1I	CCWWGG	1 cut(s)	625
Bst2BI	CACGAG	2 cut(s)	67, 271
Bst2UI	CCWGG	2 cut(s)	454, 464
BstAUI	TGTACA	1 cut(s)	601
BstBI	TTCGAA	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	4 cut(s)	285, 346, 409, 706
BstF5I	GGATG	2 cut(s)	430, 741
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	3 cut(s)	49, 55, 85
BstKTI	GATC	3 cut(s)	5, 257, 430
BstMBI	GATC	3 cut(s)	2, 254, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 153, 419
BstNI	CCWGG	2 cut(s)	454, 464
BstSCI	CCNGG	2 cut(s)	452, 462
BstX2I	RGATCY	1 cut(s)	2
BstYI	RGATCY	1 cut(s)	2
Bsu36I	CCTNAGG	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	356, 497
BtsCI	GGATG	2 cut(s)	430, 741
BtsIMutI	CAGTG	1 cut(s)	506
Cac8I	GCNNGC	1 cut(s)	51
CciI	TCATGA	1 cut(s)	224
CfoI	GCGC	3 cut(s)	49, 55, 85
Cfr13I	GGNCC	3 cut(s)	74, 450, 496
CsiI	ACCWGGT	1 cut(s)	452
Csp6I	GTAC	3 cut(s)	26, 550, 602
CspCI	CAANNNNNGTGG	2 cut(s)	428, 463
CviAII	CATG	3 cut(s)	183, 225, 525
CviQI	GTAC	3 cut(s)	26, 550, 602
DdeI	CTNAG	4 cut(s)	285, 346, 409, 706
DpnI	GATC	3 cut(s)	4, 256, 429
DpnII	GATC	3 cut(s)	2, 254, 427
DraI	TTTAAA	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	625
Eco147I	AGGCCT	1 cut(s)	356
Eco47I	GGWCC	2 cut(s)	74, 450
Eco47III	AGCGCT	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	385
Eco81I	CCTNAGG	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	452, 462
EcoT14I	CCWWGG	1 cut(s)	625
EcoT22I	ATGCAT	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	3 cut(s)	186, 228, 528
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	3 cut(s)	182, 224, 524
FbaI	TGATCA	1 cut(s)	427
FokI	GGATG	2 cut(s)	437, 748
FspBI	CTAG	1 cut(s)	199
GlaI	GCGC	3 cut(s)	48, 54, 84
GsaI	CCCAGC	1 cut(s)	325
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	356, 497
HapII	CCGG	1 cut(s)	494
HhaI	GCGC	3 cut(s)	49, 55, 85
Hin1II	CATG	3 cut(s)	186, 228, 528
Hin6I	GCGC	3 cut(s)	47, 53, 83
HinP1I	GCGC	3 cut(s)	47, 53, 83
HinfI	GANTC	3 cut(s)	189, 281, 511
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	2 cut(s)	656, 722
Hpy166II	GTNNAC	3 cut(s)	77, 604, 657
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	5 cut(s)	69, 225, 258, 620, 723
Hpy8I	GTNNAC	3 cut(s)	77, 604, 657
HpyAV	CCTTC	2 cut(s)	53, 222
HpyCH4V	TGCA	3 cut(s)	147, 182, 747
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 153, 419
HpyF3I	CTNAG	4 cut(s)	285, 346, 409, 706
Hsp92II	CATG	3 cut(s)	186, 228, 528
HspAI	GCGC	3 cut(s)	47, 53, 83
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	2, 254, 427
LmnI	GCTCC	1 cut(s)	231
MabI	ACCWGGT	1 cut(s)	452
MaeI	CTAG	1 cut(s)	199
MaeIII	GTNAC	4 cut(s)	258, 527, 668, 710
MalI	GATC	3 cut(s)	4, 256, 429
MboI	GATC	3 cut(s)	2, 254, 427
MboII	GAAGA	3 cut(s)	176, 378, 590
MflI	RGATCY	1 cut(s)	2
MluCI	AATT	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	198, 275
MmeI	TCCRAC	3 cut(s)	232, 264, 428
MnlI	CCTC	7 cut(s)	56, 65, 179, 349, 481, 617, 635
Mph1103I	ATGCAT	1 cut(s)	184
MseI	TTAA	3 cut(s)	115, 379, 556
MslI	CAYNNNNRTG	1 cut(s)	642
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	2 cut(s)	454, 464
MvaI	CCWGG	2 cut(s)	454, 464
MwoI	GCNNNNNNNGC	3 cut(s)	102, 153, 419
NdeII	GATC	3 cut(s)	2, 254, 427
NlaIII	CATG	3 cut(s)	186, 228, 528
NlaIV	GGNNCC	1 cut(s)	632
NmuCI	GTSAC	4 cut(s)	258, 527, 668, 710
NsiI	ATGCAT	1 cut(s)	184
NspV	TTCGAA	1 cut(s)	389
PagI	TCATGA	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	511
PleI	GAGTC	2 cut(s)	197, 275
PpsI	GAGTC	2 cut(s)	197, 275
Psp6I	CCWGG	2 cut(s)	452, 462
PspFI	CCCAGC	1 cut(s)	321
PspGI	CCWGG	2 cut(s)	452, 462
PspN4I	GGNNCC	1 cut(s)	632
PspPI	GGNCC	3 cut(s)	74, 450, 496
PsrI	GAACNNNNNNTAC	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	2
RsaI	GTAC	3 cut(s)	27, 551, 603
RsaNI	GTAC	3 cut(s)	26, 550, 602
RseI	CAYNNNNRTG	1 cut(s)	642
SaqAI	TTAA	3 cut(s)	115, 379, 556
Sau3AI	GATC	3 cut(s)	2, 254, 427
Sau96I	GGNCC	3 cut(s)	74, 450, 496
SchI	GAGTC	2 cut(s)	198, 275
ScrFI	CCNGG	2 cut(s)	454, 464
SexAI	ACCWGGT	1 cut(s)	452
SfuI	TTCGAA	1 cut(s)	389
SinI	GGWCC	2 cut(s)	74, 450
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	561
SmoI	CTYRAG	1 cut(s)	561
Sse9I	AATT	1 cut(s)	290
SseBI	AGGCCT	1 cut(s)	356
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	1 cut(s)	199
StuI	AGGCCT	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	452, 462
StyI	CCWWGG	1 cut(s)	625
TaqI	TCGA	2 cut(s)	195, 389
TasI	AATT	1 cut(s)	290
TatI	WGTACW	2 cut(s)	549, 601
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	3 cut(s)	115, 379, 556
Tru9I	TTAA	3 cut(s)	115, 379, 556
TscAI	CASTG	1 cut(s)	506
TseFI	GTSAC	4 cut(s)	258, 527, 668, 710
Tsp45I	GTSAC	4 cut(s)	258, 527, 668, 710
TspDTI	ATGAA	3 cut(s)	177, 213, 241
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	506
VpaK11BI	GGWCC	2 cut(s)	74, 450
XspI	CTAG	1 cut(s)	199
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.