Rh7AG300300

Ribosome biogenesis protein NSA2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002786
Physical Location & Seq
Forward (+)
32946136 .. 32963087
16952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG300300.1

Sequence Viewer

Length: 507 bp
ATGGGTATAGACTTGATCACTTTGAGCGCAAGTGCAAGAAGGAGGCTTGTGAGGTCCACAAGCGCTCTGAAATTACGTAAAAGATTGGCTATGCATGAGGAGTCATCGACTAGGCACAAGGTTGATGATGATGATGTCCATGAAGGAGCTGTTCCAACATTGATGTTGGACCGTGACAATACAACACGAACAAAGGTGAGGCCTGTGGCTGAAGATGAGATGTTTAAAGTGCTTAGAACGGGCAAACGCAAGAGTAAGAACTTGACTTCTCTCTATCCCTATGCATCCAAGTTTGAATATGAGCGATTTATCCGGCCTAGTGGATTGCGATTCAGTAAAGCTCATGTGACTCACCCTGAACTCAAATGTACTTTTAACCTTAAGATACATCGGTCTGTTTGTGACTGTTTGTTTATCTGTGAATTTCAGGTGAATGTAAGTGAGCTTGGTCTAGTCACACCTAACGGGAAAGTTGTGTGGGGTGCATCTGAGGTATCAAGACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S8e

Protein Analysis

168

Amino Acids

19.17

Weight (kDa)

9.72

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8e PF01201 61 - 130 7.4e-06 Ribosomal protein S8e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 1 cut(s) 370
AfeI AGCGCT 1 cut(s) 64
AflII CTTAAG 1 cut(s) 380
AgsI TTSAA 1 cut(s) 296
AluBI AGCT 3 cut(s) 149, 341, 445
AluI AGCT 3 cut(s) 149, 341, 445
Aor51HI AGCGCT 1 cut(s) 64
AoxI GGCC 2 cut(s) 200, 314
ApoI RAATTY 1 cut(s) 422
AspLEI GCGC 2 cut(s) 29, 65
AspS9I GGNCC 2 cut(s) 54, 169
AsuHPI GGTGA 3 cut(s) 208, 344, 442
AvaII GGWCC 2 cut(s) 54, 169
BaeI ACNNNNGTAYC 2 cut(s) 377, 410
BclI TGATCA 1 cut(s) 15
BfaI CTAG 3 cut(s) 111, 318, 452
BfoI RGCGCY 1 cut(s) 66
BfrI CTTAAG 1 cut(s) 380
Bme18I GGWCC 2 cut(s) 54, 169
BmgT120I GGNCC 2 cut(s) 54, 169
BmsI GCATC 2 cut(s) 293, 494
BsaAI YACGTR 1 cut(s) 77
BseGI GGATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 480
BseRI GAGGAG 1 cut(s) 113
BshFI GGCC 2 cut(s) 202, 316
BsiSI CCGG 1 cut(s) 313
BsnI GGCC 2 cut(s) 202, 316
Bsp143I GATC 1 cut(s) 15
BspANI GGCC 2 cut(s) 202, 316
BspCNI CTCAG 1 cut(s) 481
BspTI CTTAAG 1 cut(s) 380
BssMI GATC 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 173, 407
BstAFI CTTAAG 1 cut(s) 380
BstBAI YACGTR 1 cut(s) 77
BstDEI CTNAG 2 cut(s) 233, 489
BstF5I GGATG 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 2 cut(s) 29, 65
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstSNI TACGTA 1 cut(s) 77
BsuRI GGCC 2 cut(s) 202, 316
BtsCI GGATG 1 cut(s) 284
CfoI GCGC 2 cut(s) 29, 65
Cfr13I GGNCC 2 cut(s) 54, 169
Csp6I GTAC 1 cut(s) 369
CviAII CATG 3 cut(s) 95, 140, 344
CviJI RGCY 8 cut(s) 46, 89, 149, 202, 209, 316, 341, 445
CviKI_1 RGCY 8 cut(s) 46, 89, 149, 202, 209, 316, 341, 445
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 2 cut(s) 233, 489
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
DraI TTTAAA 1 cut(s) 226
Eco105I TACGTA 1 cut(s) 77
Eco147I AGGCCT 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 54, 169
Eco47III AGCGCT 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 231
EcoT22I ATGCAT 2 cut(s) 96, 286
FaeI CATG 3 cut(s) 98, 143, 347
FaiI YATR 8 cut(s) 8, 92, 96, 141, 282, 300, 345, 505
FatI CATG 3 cut(s) 94, 139, 343
FbaI TGATCA 1 cut(s) 15
FokI GGATG 1 cut(s) 271
FspBI CTAG 3 cut(s) 111, 318, 452
GlaI GCGC 2 cut(s) 28, 64
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 2 cut(s) 202, 316
HapII CCGG 1 cut(s) 313
HhaI GCGC 2 cut(s) 29, 65
Hin1II CATG 3 cut(s) 98, 143, 347
Hin6I GCGC 2 cut(s) 27, 63
HinP1I GCGC 2 cut(s) 27, 63
HinfI GANTC 3 cut(s) 101, 330, 349
HpaII CCGG 1 cut(s) 313
HphI GGTGA 3 cut(s) 208, 344, 442
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 69, 490
Hpy188III TCNNGA 1 cut(s) 498
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 2 cut(s) 33, 137
HpyCH4III ACNGT 2 cut(s) 173, 407
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 4 cut(s) 35, 94, 284, 485
HpyF3I CTNAG 2 cut(s) 233, 489
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 3 cut(s) 98, 143, 347
HspAI GCGC 2 cut(s) 27, 63
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 216, 326, 369, 413
LweI GCATC 2 cut(s) 293, 494
MaeI CTAG 3 cut(s) 111, 318, 452
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 4 cut(s) 173, 346, 401, 454
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 1 cut(s) 224
MluCI AATT 2 cut(s) 71, 422
MlyI GAGTC 2 cut(s) 110, 343
MmeI TCCRAC 2 cut(s) 147, 179
MnlI CCTC 5 cut(s) 36, 45, 91, 192, 484
Mph1103I ATGCAT 2 cut(s) 96, 286
MseI TTAA 3 cut(s) 225, 375, 381
MspCI CTTAAG 1 cut(s) 380
MspI CCGG 1 cut(s) 313
NdeII GATC 1 cut(s) 15
NlaIII CATG 3 cut(s) 98, 143, 347
NmuCI GTSAC 4 cut(s) 173, 346, 401, 454
NsiI ATGCAT 2 cut(s) 96, 286
PceI AGGCCT 1 cut(s) 202
PfeI GAWTC 1 cut(s) 330
PleI GAGTC 2 cut(s) 109, 343
PpsI GAGTC 2 cut(s) 109, 343
Ppu21I YACGTR 1 cut(s) 77
PspPI GGNCC 2 cut(s) 54, 169
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SaqAI TTAA 3 cut(s) 225, 375, 381
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 2 cut(s) 54, 169
SchI GAGTC 2 cut(s) 110, 343
SfaNI GCATC 2 cut(s) 293, 494
SinI GGWCC 2 cut(s) 54, 169
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SnaBI TACGTA 1 cut(s) 77
Sse9I AATT 2 cut(s) 71, 422
SseBI AGGCCT 1 cut(s) 202
SspMI CTAG 3 cut(s) 111, 318, 452
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 2 cut(s) 173, 407
TaiI ACGT 1 cut(s) 79
TaqI TCGA 1 cut(s) 107
TaqII GACCGA 1 cut(s) 381
TasI AATT 2 cut(s) 71, 422
TatI WGTACW 1 cut(s) 368
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 3 cut(s) 225, 375, 381
Tru9I TTAA 3 cut(s) 225, 375, 381
TseFI GTSAC 4 cut(s) 173, 346, 401, 454
Tsp45I GTSAC 4 cut(s) 173, 346, 401, 454
TspDTI ATGAA 1 cut(s) 156
Vha464I CTTAAG 1 cut(s) 380
VpaK11BI GGWCC 2 cut(s) 54, 169
XapI RAATTY 1 cut(s) 422
XspI CTAG 3 cut(s) 111, 318, 452
Zsp2I ATGCAT 2 cut(s) 96, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.