Rh2CG283400

Ribosome biogenesis protein NSA2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002786
Physical Location & Seq
Forward (+)
31693612 .. 31697555
3944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG283400.1

Sequence Viewer

Length: 585 bp
ATGCACGAGGAGTCATCAACTAGACACAAGGTTGATGATGATGTTCATGAAGGAGCTGTTCCAACATATCTGTTGGATCGTGACAATACAACACGAGCAAAGACTCTTAGCAATTCCATCAAGCAAAAACGGAAAGAGAAAGCTGGGAAATGGGAAGTCCCTCTGCCTAAGGTAAGGCCTGTGGCTGAAGATGAGATGTTTAAAGTGCTTAGAACGGGCAAACGCAAGACTAAGCAATGGAAGCGGATGATCACAAAAGCCACATTTGTGGGACCTGGTTTTACAAGGAAACCTCCCAAGTATGAGCGGTTTATCCGGCCCAGTGGGTTGCGATTCACTAAAGCTCACGTGACACACCCTGAACTCAAATGTACTTTTAACCTCGAGATCATTGGTGTGAAGAAAAACCCTAATGGTCAAATGTACACCTCACTTGGTGTCTTGACCAAGGGAACCATCATTGAGGTGAATGTAAGTGAACTTGGTCTAGTCACACCTAATGGAAAAGTTGTATGGGGGAAATATGCTCAGGTGACGAATAATCCAGAGAACGATGGATGTGTAAATGCAGTTCTGCTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S8e

Protein Analysis

194

Amino Acids

21.92

Weight (kDa)

9.91

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8e PF01201 39 - 193 1.7e-37 Ribosomal protein S8e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 307
AciI CCGC 2 cut(s) 244, 307
AclWI GGATC 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 207
AcvI CACGTG 1 cut(s) 349
AdeI CACNNNGTG 1 cut(s) 437
AfaI GTAC 2 cut(s) 373, 425
AjnI CCWGG 1 cut(s) 274
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 3 cut(s) 56, 143, 344
AluI AGCT 3 cut(s) 56, 143, 344
AlwI GGATC 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 383
AoxI GGCC 2 cut(s) 176, 317
AspS9I GGNCC 2 cut(s) 272, 318
AsuHPI GGTGA 2 cut(s) 478, 544
AvaI CYCGRG 1 cut(s) 383
AvaII GGWCC 1 cut(s) 272
AxyI CCTNAGG 1 cut(s) 168
BauI CACGAG 2 cut(s) 5, 93
BbrPI CACGTG 1 cut(s) 349
BccI CCATC 3 cut(s) 125, 464, 548
BciT130I CCWGG 1 cut(s) 276
BclI TGATCA 1 cut(s) 249
BfaI CTAG 2 cut(s) 21, 488
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 383
BmgT120I GGNCC 2 cut(s) 272, 318
BmiI GGNNCC 2 cut(s) 273, 454
BmrFI CCNGG 1 cut(s) 276
BmrI ACTGGG 1 cut(s) 315
BmuI ACTGGG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 528
BsaAI YACGTR 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 447
Bse1I ACTGG 1 cut(s) 321
Bse21I CCTNAGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 2 cut(s) 252, 563
BseMI GCAATG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 542
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 23
BseYI CCCAGC 1 cut(s) 143
BshFI GGCC 2 cut(s) 178, 319
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 1 cut(s) 316
BslFI GGGAC 2 cut(s) 143, 285
BsmFI GGGAC 2 cut(s) 143, 285
BsnI GGCC 2 cut(s) 178, 319
BsoBI CYCGRG 1 cut(s) 383
Bsp1407I TGTACA 1 cut(s) 423
Bsp143I GATC 3 cut(s) 76, 249, 387
BspACI CCGC 2 cut(s) 244, 307
BspANI GGCC 2 cut(s) 178, 319
BspCNI CTCAG 1 cut(s) 541
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 273, 454
BspPI GGATC 1 cut(s) 84
BsrBI CCGCTC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 423
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 3 cut(s) 76, 249, 387
BssSI CACGAG 2 cut(s) 5, 93
BssT1I CCWWGG 1 cut(s) 447
Bst2BI CACGAG 2 cut(s) 5, 93
Bst2UI CCWGG 1 cut(s) 276
BstAUI TGTACA 1 cut(s) 423
BstBAI YACGTR 1 cut(s) 349
BstDEI CTNAG 5 cut(s) 107, 168, 209, 231, 528
BstF5I GGATG 2 cut(s) 252, 563
BstKTI GATC 3 cut(s) 79, 252, 390
BstMBI GATC 3 cut(s) 76, 249, 387
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstXI CCANNNNNNTGG 1 cut(s) 268
Bsu36I CCTNAGG 1 cut(s) 168
BsuRI GGCC 2 cut(s) 178, 319
BtsCI GGATG 2 cut(s) 252, 563
BtsIMutI CAGTG 1 cut(s) 328
CciI TCATGA 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 272, 318
CsiI ACCWGGT 1 cut(s) 274
Csp6I GTAC 2 cut(s) 372, 424
CviAII CATG 1 cut(s) 47
CviJI RGCY 7 cut(s) 56, 143, 178, 185, 260, 319, 344
CviKI_1 RGCY 7 cut(s) 56, 143, 178, 185, 260, 319, 344
CviQI GTAC 2 cut(s) 372, 424
DdeI CTNAG 5 cut(s) 107, 168, 209, 231, 528
DpnI GATC 3 cut(s) 78, 251, 389
DpnII GATC 3 cut(s) 76, 249, 387
DraI TTTAAA 1 cut(s) 202
DraIII CACNNNGTG 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 447
Eco147I AGGCCT 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 207
Eco72I CACGTG 1 cut(s) 349
Eco81I CCTNAGG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 1 cut(s) 50
FaiI YATR 5 cut(s) 48, 67, 303, 514, 525
FaqI GGGAC 2 cut(s) 143, 285
FatI CATG 1 cut(s) 46
FbaI TGATCA 1 cut(s) 249
FokI GGATG 2 cut(s) 259, 570
FspBI CTAG 2 cut(s) 21, 488
GsaI CCCAGC 1 cut(s) 147
HaeIII GGCC 2 cut(s) 178, 319
HapII CCGG 1 cut(s) 316
Hin1II CATG 1 cut(s) 50
HinfI GANTC 3 cut(s) 11, 103, 333
HpaII CCGG 1 cut(s) 316
HphI GGTGA 2 cut(s) 478, 544
Hpy166II GTNNAC 2 cut(s) 426, 479
Hpy188III TCNNGA 5 cut(s) 47, 80, 385, 442, 545
Hpy8I GTNNAC 2 cut(s) 426, 479
HpyAV CCTTC 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 2 cut(s) 4, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 5 cut(s) 107, 168, 209, 231, 528
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 1 cut(s) 50
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 3 cut(s) 76, 249, 387
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 9 cut(s) 129, 192, 261, 288, 329, 334, 372, 515, 558
MabI ACCWGGT 1 cut(s) 274
MaeI CTAG 2 cut(s) 21, 488
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 4 cut(s) 80, 349, 490, 532
MalI GATC 3 cut(s) 78, 251, 389
MbiI CCGCTC 1 cut(s) 307
MboI GATC 3 cut(s) 76, 249, 387
MboII GAAGA 2 cut(s) 200, 412
MluCI AATT 1 cut(s) 112
MlyI GAGTC 2 cut(s) 20, 97
MmeI TCCRAC 2 cut(s) 54, 86
MnlI CCTC 5 cut(s) 171, 303, 392, 439, 457
MseI TTAA 2 cut(s) 201, 378
MslI CAYNNNNRTG 3 cut(s) 266, 395, 464
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 241
NdeII GATC 3 cut(s) 76, 249, 387
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 2 cut(s) 273, 454
NmuCI GTSAC 4 cut(s) 80, 349, 490, 532
OliI CACNNNNGTG 1 cut(s) 266
PaeR7I CTCGAG 1 cut(s) 383
PagI TCATGA 1 cut(s) 46
PceI AGGCCT 1 cut(s) 178
PfeI GAWTC 1 cut(s) 333
PleI GAGTC 2 cut(s) 19, 97
PmaCI CACGTG 1 cut(s) 349
PmlI CACGTG 1 cut(s) 349
PpsI GAGTC 2 cut(s) 19, 97
Ppu21I YACGTR 1 cut(s) 349
PpuMI RGGWCCY 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 274
PspCI CACGTG 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 143
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 273, 454
PspPI GGNCC 2 cut(s) 272, 318
PspPPI RGGWCCY 1 cut(s) 272
PsrI GAACNNNNNNTAC 1 cut(s) 555
RsaI GTAC 2 cut(s) 373, 425
RsaNI GTAC 2 cut(s) 372, 424
RseI CAYNNNNRTG 3 cut(s) 266, 395, 464
SaqAI TTAA 2 cut(s) 201, 378
Sau3AI GATC 3 cut(s) 76, 249, 387
Sau96I GGNCC 2 cut(s) 272, 318
SchI GAGTC 2 cut(s) 20, 97
ScrFI CCNGG 1 cut(s) 276
SexAI ACCWGGT 1 cut(s) 274
Sfr274I CTCGAG 1 cut(s) 383
SinI GGWCC 1 cut(s) 272
SlaI CTCGAG 1 cut(s) 383
SmiMI CAYNNNNRTG 3 cut(s) 266, 395, 464
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 1 cut(s) 112
SseBI AGGCCT 1 cut(s) 178
SsiI CCGC 2 cut(s) 244, 307
SspMI CTAG 2 cut(s) 21, 488
StuI AGGCCT 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 1 cut(s) 447
TaiI ACGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 384
TasI AATT 1 cut(s) 112
TatI WGTACW 2 cut(s) 371, 423
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 2 cut(s) 201, 378
Tru9I TTAA 2 cut(s) 201, 378
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 4 cut(s) 80, 349, 490, 532
Tsp45I GTSAC 4 cut(s) 80, 349, 490, 532
TspDTI ATGAA 2 cut(s) 35, 63
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 272
XhoI CTCGAG 1 cut(s) 383
XspI CTAG 2 cut(s) 21, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.