Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002786

Physical Location & Seq

Genomic Coordinates Forward (+)

15945969 .. 15948945

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G241300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCCGCAGGGAGATTACATAGAGCTTCACAGGAAGCGGTATGGATACCGACCAGACCACTTCGAGCGAAAGCGCAAGAAGGAGGCTCGTTTGGTCCACAAGCGTTCAGAGACTGCTCAGAAGGCTCTGGGTATCAAGGGTAAGATGTTTGCTAAGAAACGCTATGCAGAAAAGGCTCTCATGAAGAAAACGTTGGCTATGCATGAGGAGTCATCAACTAGGCGCAAGGTGGATGATGATGTTCATGAAGGAGCTGTTCCAGCATATCTTCTGGATCGTGACAACACAACACGTGCAAAAATTCTCAACAACACCATCAAGCAAAAAAGGAAGGAGAAAGCTGGGAAATGGGAAGTCCCTCTACCCAAGGTAAGGCCTGTGGCTGAAGATGAGATGTTCAAAATTCTTAGATCTGGAAAACGCAAGACCAAGCAATGGAAGAGGATGGTCACAAAAGCCACATTTGTAGGACCTGGTTTCACGAGGAAACCTCCGAAGTACGAGAGGTTTATCCGGCCCAGTGGATTGCGATTCACCAAAGCTCATGTGACACACCCTGAACTTAAGTGCACTTTTAACCTTGAGATCATTGGTGTGAAGAAGAATCCCAATGGTCAAATGTATACCTCTCTTGGTGTTTTGACCAAGGGAACCATCATTGAGGTGAATGTAAGTGAACTTGGTCTAGTCACACCTGCAGGGAAAGTTGTATGGGGGAAATATGCTCAGGTGACGAATAATCCAGAGAACGACGGATGTGTAAATGCAGTCCTGCTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

261

Amino Acids

29.81

Weight (kDa)

10.19

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06360
fragaria_vesca	FvH4_1g24730 FvH4_1g24730 FvH4_1g24730 FvH4_1g24810
malus_domestica	MD05G1235300.v1.1 MD10G1211300.v1.1
prunus_persica	Prupe.4G241300_v2.0.a1
pyrus_communis	pycom05g21220 pycom10g17960
rosa_chinensis	RchiOBHm_Chr2g0122251 RchiOBHm_Chr4g0409741 RchiOBHm_Chr7g0216581 RchiOBHm_Chr7g0216591
rosa_laevigata	RLG00000008527 RLG00000018672
rosa_multiflora	Rmu_co8402305.1_g000001 Rmu_co8495649.1_g000001 Rmu_sc0002786.1_g000003 Rmu_sc0009638.1_g000011 Rmu_sc0009638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121730 Rroxscaffold_3G00243120 Rroxscaffold_5G00354300
rosa_rugosa	Rorug02G0237400 Rorug04G0096500
rosa_samantha	Rh2AG296500 Rh2BG305000 Rh2CG283400 Rh2DG320400 Rh4AG157900 Rh4CG168400 Rh4DG152300 Rh7AG300300 Rh7CG318800
rosa_wichuraiana	Rw2G023590 Rw4G012910 Rw4G013010 Rw7G025520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	703
Acc36I	ACCTGC	1 cut(s)	703
AccB7I	CCANNNNNTGG	1 cut(s)	435
AccI	GTMKAC	1 cut(s)	623
AciI	CCGC	2 cut(s)	5, 37
AclI	AACGTT	1 cut(s)	191
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	300, 402
AcuI	CTGAAG	1 cut(s)	405
AcvI	CACGTG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	372, 435
AflII	CTTAAG	1 cut(s)	563
AflIII	ACRYGT	1 cut(s)	290
AgsI	TTSAA	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	472
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	4 cut(s)	25, 254, 341, 542
AluI	AGCT	4 cut(s)	25, 254, 341, 542
Alw21I	GWGCWC	1 cut(s)	572
Alw26I	GTCTC	1 cut(s)	104
Alw44I	GTGCAC	1 cut(s)	568
AlwI	GGATC	1 cut(s)	282
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	374, 515
ApaLI	GTGCAC	1 cut(s)	568
ApoI	RAATTY	2 cut(s)	300, 402
AspLEI	GCGC	2 cut(s)	75, 225
AspS9I	GGNCC	3 cut(s)	94, 470, 516
AsuHPI	GGTGA	3 cut(s)	526, 676, 742
AvaII	GGWCC	2 cut(s)	94, 470
BaeGI	GKGCMC	1 cut(s)	572
BarI	GAAGNNNNNNTAC	2 cut(s)	345, 377
BauI	CACGAG	1 cut(s)	481
BbrPI	CACGTG	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	572
BccI	CCATC	3 cut(s)	323, 439, 662
BciT130I	CCWGG	1 cut(s)	474
BciVI	GTATCC	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	2 cut(s)	219, 686
BfmI	CTRYAG	1 cut(s)	696
BfrI	CTTAAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	703
BfuI	GTATCC	1 cut(s)	38
BglII	AGATCT	1 cut(s)	410
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	2 cut(s)	94, 470
BmgT120I	GGNCC	3 cut(s)	94, 470, 516
BmiI	GGNNCC	1 cut(s)	652
BmrFI	CCNGG	1 cut(s)	474
BmrI	ACTGGG	1 cut(s)	513
BmuI	ACTGGG	1 cut(s)	513
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
Bpu10I	CCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	602
BsaAI	YACGTR	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	366, 645
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 435
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	440
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	366, 645
BseGI	GGATG	3 cut(s)	238, 450, 761
BseLI	CCNNNNNNNGG	2 cut(s)	372, 435
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	2 cut(s)	131, 740
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	572
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	2 cut(s)	376, 517
BsiHKAI	GWGCWC	1 cut(s)	572
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	372, 435
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	376, 517
Bsp1286I	GDGCHC	1 cut(s)	572
Bsp143I	GATC	3 cut(s)	274, 410, 585
BspACI	CCGC	2 cut(s)	5, 37
BspANI	GGCC	2 cut(s)	376, 517
BspCNI	CTCAG	2 cut(s)	130, 739
BspHI	TCATGA	2 cut(s)	180, 244
BspLI	GGNNCC	1 cut(s)	652
BspMAI	CTGCAG	1 cut(s)	700
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	1 cut(s)	282
BspTI	CTTAAG	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	2 cut(s)	366, 645
BssMI	GATC	3 cut(s)	274, 410, 585
BssNAI	GTATAC	1 cut(s)	624
BssSI	CACGAG	1 cut(s)	481
BssT1I	CCWWGG	2 cut(s)	366, 645
Bst1107I	GTATAC	1 cut(s)	624
Bst2BI	CACGAG	1 cut(s)	481
Bst2UI	CCWGG	1 cut(s)	474
Bst6I	CTCTTC	1 cut(s)	434
BstAFI	CTTAAG	1 cut(s)	563
BstBAI	YACGTR	1 cut(s)	293
BstDEI	CTNAG	4 cut(s)	117, 153, 407, 726
BstF5I	GGATG	3 cut(s)	238, 450, 761
BstHHI	GCGC	2 cut(s)	75, 225
BstKTI	GATC	3 cut(s)	277, 413, 588
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	3 cut(s)	274, 410, 585
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 173, 260
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	472
BstSFI	CTRYAG	1 cut(s)	696
BstSLI	GKGCMC	1 cut(s)	572
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BstZ17I	GTATAC	1 cut(s)	624
BsuI	GTATCC	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	376, 517
BtsCI	GGATG	3 cut(s)	238, 450, 761
BtsIMutI	CAGTG	1 cut(s)	526
BveI	ACCTGC	1 cut(s)	703
CaiI	CAGNNNCTG	1 cut(s)	113
CciI	TCATGA	2 cut(s)	180, 244
CfoI	GCGC	2 cut(s)	75, 225
Cfr13I	GGNCC	3 cut(s)	94, 470, 516
CsiI	ACCWGGT	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	4 cut(s)	181, 203, 245, 545
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	4 cut(s)	117, 153, 407, 726
DpnI	GATC	3 cut(s)	276, 412, 587
DpnII	GATC	3 cut(s)	274, 410, 585
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco130I	CCWWGG	2 cut(s)	366, 645
Eco147I	AGGCCT	1 cut(s)	376
Eco47I	GGWCC	2 cut(s)	94, 470
Eco57I	CTGAAG	1 cut(s)	405
Eco72I	CACGTG	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	2 cut(s)	366, 645
EcoT22I	ATGCAT	1 cut(s)	204
ErhI	CCWWGG	2 cut(s)	366, 645
FaeI	CATG	4 cut(s)	184, 206, 248, 548
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	4 cut(s)	180, 202, 244, 544
FblI	GTMKAC	1 cut(s)	623
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	3 cut(s)	245, 457, 768
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	219, 686
GlaI	GCGC	2 cut(s)	74, 224
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	376, 517
HapII	CCGG	1 cut(s)	514
HhaI	GCGC	2 cut(s)	75, 225
Hin1II	CATG	4 cut(s)	184, 206, 248, 548
Hin6I	GCGC	2 cut(s)	73, 223
HinP1I	GCGC	2 cut(s)	73, 223
HinfI	GANTC	3 cut(s)	209, 531, 604
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	3 cut(s)	526, 676, 742
Hpy166II	GTNNAC	4 cut(s)	97, 570, 624, 677
Hpy188I	TCNGA	3 cut(s)	109, 120, 495
Hpy188III	TCNNGA	7 cut(s)	181, 245, 272, 278, 414, 481, 743
Hpy8I	GTNNAC	4 cut(s)	97, 570, 624, 677
Hpy99I	CGWCG	1 cut(s)	755
HpyAV	CCTTC	4 cut(s)	73, 115, 242, 325
HpyCH4IV	ACGT	2 cut(s)	191, 292
HpyCH4V	TGCA	6 cut(s)	167, 202, 296, 570, 698, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 173, 260
HpyF3I	CTNAG	4 cut(s)	117, 153, 407, 726
HpySE526I	ACGT	2 cut(s)	191, 292
Hsp92II	CATG	4 cut(s)	184, 206, 248, 548
HspAI	GCGC	2 cut(s)	73, 223
Kzo9I	GATC	3 cut(s)	274, 410, 585
LmnI	GCTCC	1 cut(s)	251
MabI	ACCWGGT	1 cut(s)	472
MaeI	CTAG	2 cut(s)	219, 686
MaeII	ACGT	2 cut(s)	191, 292
MaeIII	GTNAC	5 cut(s)	278, 448, 547, 688, 730
MalI	GATC	3 cut(s)	276, 412, 587
MboI	GATC	3 cut(s)	274, 410, 585
MboII	GAAGA	6 cut(s)	196, 260, 398, 451, 610, 613
MflI	RGATCY	1 cut(s)	410
MhlI	GDGCHC	1 cut(s)	572
MluCI	AATT	2 cut(s)	300, 402
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	9 cut(s)	76, 199, 369, 435, 477, 498, 501, 637, 655
Mph1103I	ATGCAT	1 cut(s)	204
MseI	TTAA	3 cut(s)	564, 576, 781
MslI	CAYNNNNRTG	2 cut(s)	593, 662
MspCI	CTTAAG	1 cut(s)	563
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	3 cut(s)	122, 173, 260
NdeII	GATC	3 cut(s)	274, 410, 585
NlaIII	CATG	4 cut(s)	184, 206, 248, 548
NlaIV	GGNNCC	1 cut(s)	652
NmuCI	GTSAC	5 cut(s)	278, 448, 547, 688, 730
NsiI	ATGCAT	1 cut(s)	204
PagI	TCATGA	2 cut(s)	180, 244
PaqCI	CACCTGC	1 cut(s)	703
PceI	AGGCCT	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	531, 604
PflMI	CCANNNNNTGG	1 cut(s)	435
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	217
PmaCI	CACGTG	1 cut(s)	293
PmlI	CACGTG	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	217
Ppu21I	YACGTR	1 cut(s)	293
PpuMI	RGGWCCY	1 cut(s)	470
Psp1406I	AACGTT	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	472
PspCI	CACGTG	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	652
PspPI	GGNCC	3 cut(s)	94, 470, 516
PspPPI	RGGWCCY	1 cut(s)	470
PstI	CTGCAG	1 cut(s)	700
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	2 cut(s)	593, 662
SaqAI	TTAA	3 cut(s)	564, 576, 781
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	274, 410, 585
Sau96I	GGNCC	3 cut(s)	94, 470, 516
SbfI	CCTGCAGG	1 cut(s)	700
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	474
SdaI	CCTGCAGG	1 cut(s)	700
SduI	GDGCHC	1 cut(s)	572
SexAI	ACCWGGT	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	696
SinI	GGWCC	2 cut(s)	94, 470
SmiMI	CAYNNNNRTG	2 cut(s)	593, 662
SmlI	CTYRAG	2 cut(s)	563, 581
SmoI	CTYRAG	2 cut(s)	563, 581
Sse8387I	CCTGCAGG	1 cut(s)	700
Sse9I	AATT	2 cut(s)	300, 402
SseBI	AGGCCT	1 cut(s)	376
SsiI	CCGC	2 cut(s)	5, 37
SspMI	CTAG	2 cut(s)	219, 686
StuI	AGGCCT	1 cut(s)	376
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	2 cut(s)	366, 645
TaiI	ACGT	2 cut(s)	194, 295
TaqI	TCGA	1 cut(s)	63
TasI	AATT	2 cut(s)	300, 402
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	531, 604
Tru1I	TTAA	3 cut(s)	564, 576, 781
Tru9I	TTAA	3 cut(s)	564, 576, 781
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	5 cut(s)	278, 448, 547, 688, 730
Tsp45I	GTSAC	5 cut(s)	278, 448, 547, 688, 730
TspDTI	ATGAA	3 cut(s)	197, 233, 261
TspGWI	ACGGA	1 cut(s)	768
TspRI	CASTG	1 cut(s)	526
Van91I	CCANNNNNTGG	1 cut(s)	435
Vha464I	CTTAAG	1 cut(s)	563
VneI	GTGCAC	1 cut(s)	568
VpaK11BI	GGWCC	2 cut(s)	94, 470
XapI	RAATTY	2 cut(s)	300, 402
XmiI	GTMKAC	1 cut(s)	623
XspI	CTAG	2 cut(s)	219, 686
Zsp2I	ATGCAT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.