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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G17910 AT5G17910 AT5G17910 |
| fragaria_vesca | FvH4_1g29420 FvH4_1g29420 FvH4_1g29420 FvH4_2g10091 FvH4_2g10092 |
| malus_domestica | MD05G1057800.v1.1 MD12G1015000.v1.1 MD14G1012900.v1.1 |
| prunus_persica | Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1 |
| pyrus_communis | pycom05g04890 pycom12g01220 pycom14g01090 |
| rosa_chinensis | RchiOBHm_Chr3g0495491 RchiOBHm_Chr6g0267051 |
| rosa_laevigata | RLG00000014046 RLG00000022616 |
| rosa_multiflora | Rmu_co8285861.1_g000001 Rmu_sc0004755.1_g000026 Rmu_sc0005599.1_g000001 Rmu_sc0006163.1_g000016 Rmu_sc0013804.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00390490 Rroxscaffold_7G00201200 |
| rosa_rugosa | Rorug03G0273800 Rorug06G0028700 |
| rosa_samantha | Rh3AG321400 Rh3BG356700 Rh3CG353500 Rh3DG356000 Rh6AG150200 Rh6BG151100 Rh6CG146500 Rh6DG135200 |
| rosa_wichuraiana | Rw3G028090 Rw6G013020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 200 |
| Acc36I | ACCTGC | 1 cut(s) | 3442 |
| AccB1I | GGYRCC | 1 cut(s) | 1433 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1066 |
| AccI | GTMKAC | 5 cut(s) | 384, 581, 2085, 2211, 2708 |
| AciI | CCGC | 9 cut(s) | 210, 348, 575, 728, 791, 936, 2189, 2714, 3065 |
| AclWI | GGATC | 3 cut(s) | 847, 1261, 3415 |
| AcoI | YGGCCR | 1 cut(s) | 241 |
| AcsI | RAATTY | 7 cut(s) | 355, 1039, 2389, 2802, 2917, 3181, 3331 |
| AcuI | CTGAAG | 8 cut(s) | 131, 837, 1390, 1479, 2241, 2397, 3234, 3467 |
| AfaI | GTAC | 2 cut(s) | 954, 1593 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1066, 1250, 1726, 3029, 3149 |
| AflIII | ACRYGT | 2 cut(s) | 18, 2351 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1748 |
| AhlI | ACTAGT | 1 cut(s) | 2167 |
| AjnI | CCWGG | 6 cut(s) | 304, 891, 1249, 1504, 1719, 2477 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1049, 1081, 1367, 1399, 3534, 3566 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 286, 318, 3399, 3431 |
| Alw21I | GWGCWC | 4 cut(s) | 737, 2693, 2763, 3445 |
| AlwI | GGATC | 3 cut(s) | 847, 1261, 3415 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2420 |
| Ama87I | CYCGRG | 1 cut(s) | 257 |
| AoxI | GGCC | 3 cut(s) | 241, 396, 889 |
| ApeKI | GCWGC | 8 cut(s) | 339, 478, 848, 1887, 3166, 3316, 3470, 3565 |
| ApoI | RAATTY | 7 cut(s) | 355, 1039, 2389, 2802, 2917, 3181, 3331 |
| AseI | ATTAAT | 2 cut(s) | 465, 1112 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1696, 2529 |
| AspLEI | GCGC | 2 cut(s) | 961, 1191 |
| AspS9I | GGNCC | 3 cut(s) | 397, 439, 1502 |
| AsuC2I | CCSGG | 1 cut(s) | 715 |
| AvaI | CYCGRG | 1 cut(s) | 257 |
| AvaII | GGWCC | 2 cut(s) | 439, 1502 |
| BalI | TGGCCA | 1 cut(s) | 243 |
| BanI | GGYRCC | 1 cut(s) | 1433 |
| BanII | GRGCYC | 1 cut(s) | 737 |
| BauI | CACGAG | 1 cut(s) | 1442 |
| BbsI | GAAGAC | 1 cut(s) | 1713 |
| Bbv12I | GWGCWC | 4 cut(s) | 737, 2693, 2763, 3445 |
| BbvI | GCAGC | 8 cut(s) | 351, 490, 860, 1899, 3153, 3303, 3482, 3552 |
| BceAI | ACGGC | 2 cut(s) | 284, 949 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1180, 1214 |
| BciT130I | CCWGG | 6 cut(s) | 306, 893, 1251, 1506, 1721, 2479 |
| BciVI | GTATCC | 2 cut(s) | 2599, 2980 |
| BclI | TGATCA | 1 cut(s) | 103 |
| BcnI | CCSGG | 1 cut(s) | 715 |
| BcuI | ACTAGT | 1 cut(s) | 2167 |
| BfaI | CTAG | 4 cut(s) | 369, 1095, 2168, 2841 |
| BfmI | CTRYAG | 3 cut(s) | 1390, 1635, 3378 |
| BfuAI | ACCTGC | 1 cut(s) | 3442 |
| BfuI | GTATCC | 2 cut(s) | 2599, 2980 |
| BglII | AGATCT | 1 cut(s) | 2470 |
| BisI | GCNGC | 8 cut(s) | 340, 479, 849, 1888, 3167, 3317, 3471, 3566 |
| BlsI | GCNGC | 8 cut(s) | 341, 480, 850, 1889, 3168, 3318, 3472, 3567 |
| Bme1390I | CCNGG | 7 cut(s) | 306, 715, 893, 1251, 1506, 1721, 2479 |
| Bme18I | GGWCC | 2 cut(s) | 439, 1502 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1748 |
| BmeT110I | CYCGRG | 1 cut(s) | 257 |
| BmgT120I | GGNCC | 3 cut(s) | 397, 439, 1502 |
| BmiI | GGNNCC | 8 cut(s) | 226, 303, 399, 440, 1058, 1435, 1800, 2079 |
| BmrFI | CCNGG | 7 cut(s) | 306, 715, 893, 1251, 1506, 1721, 2479 |
| BpiI | GAAGAC | 1 cut(s) | 1713 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 344, 376 |
| BpmI | CTGGAG | 1 cut(s) | 3009 |
| BpuEI | CTTGAG | 4 cut(s) | 1316, 1885, 2042, 3516 |
| BpuMI | CCSGG | 1 cut(s) | 715 |
| Bsa29I | ATCGAT | 1 cut(s) | 1758 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2064 |
| BsaI | GGTCTC | 4 cut(s) | 187, 1332, 3460, 3470 |
| BsaJI | CCNNGG | 5 cut(s) | 892, 1249, 1687, 1719, 2493 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 722, 752, 2805, 2819, 2835, 2849, 3262, 3292 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1066, 1250, 1726, 3029, 3149 |
| Bse118I | RCCGGY | 1 cut(s) | 955 |
| Bse1I | ACTGG | 1 cut(s) | 2081 |
| Bse3DI | GCAATG | 2 cut(s) | 1364, 3247 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2064 |
| BseBI | CCWGG | 6 cut(s) | 306, 893, 1251, 1506, 1721, 2479 |
| BseCI | ATCGAT | 1 cut(s) | 1758 |
| BseDI | CCNNGG | 5 cut(s) | 892, 1249, 1687, 1719, 2493 |
| BseJI | GATNNNNATC | 1 cut(s) | 2064 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1066, 1250, 1726, 3029, 3149 |
| BseMI | GCAATG | 2 cut(s) | 1364, 3247 |
| BseMII | CTCAG | 6 cut(s) | 375, 498, 554, 1110, 1953, 3465 |
| BseNI | ACTGG | 1 cut(s) | 2081 |
| BseRI | GAGGAG | 4 cut(s) | 660, 663, 2840, 3398 |
| BseXI | GCAGC | 8 cut(s) | 351, 490, 860, 1899, 3153, 3303, 3482, 3552 |
| BseYI | CCCAGC | 1 cut(s) | 2343 |
| BsgI | GTGCAG | 3 cut(s) | 190, 497, 2900 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1762 |
| BshFI | GGCC | 3 cut(s) | 243, 398, 891 |
| BshNI | GGYRCC | 1 cut(s) | 1433 |
| BshVI | ATCGAT | 1 cut(s) | 1758 |
| BsiEI | CGRYCG | 1 cut(s) | 1762 |
| BsiHKAI | GWGCWC | 4 cut(s) | 737, 2693, 2763, 3445 |
| BsiHKCI | CYCGRG | 1 cut(s) | 257 |
| BsiSI | CCGG | 3 cut(s) | 642, 714, 956 |
| BslFI | GGGAC | 3 cut(s) | 389, 452, 1743 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1066, 1250, 1726, 3029, 3149 |
| BsmFI | GGGAC | 3 cut(s) | 389, 452, 1743 |
| BsmI | GAATGC | 2 cut(s) | 1382, 2407 |
| BsnI | GGCC | 3 cut(s) | 243, 398, 891 |
| Bso31I | GGTCTC | 4 cut(s) | 187, 1332, 3460, 3470 |
| BsoBI | CYCGRG | 1 cut(s) | 257 |
| Bsp1286I | GDGCHC | 4 cut(s) | 737, 2693, 2763, 3445 |
| Bsp19I | CCATGG | 2 cut(s) | 1687, 2493 |
| BspACI | CCGC | 9 cut(s) | 210, 348, 575, 728, 791, 936, 2189, 2714, 3065 |
| BspANI | GGCC | 3 cut(s) | 243, 398, 891 |
| BspCNI | CTCAG | 6 cut(s) | 374, 499, 553, 1111, 1952, 3466 |
| BspDI | ATCGAT | 1 cut(s) | 1758 |
| BspHI | TCATGA | 3 cut(s) | 685, 1986, 2806 |
| BspLI | GGNNCC | 8 cut(s) | 226, 303, 399, 440, 1058, 1435, 1800, 2079 |
| BspMI | ACCTGC | 1 cut(s) | 3442 |
| BspPI | GGATC | 3 cut(s) | 847, 1261, 3415 |
| BspQI | GCTCTTC | 1 cut(s) | 2535 |
| BspT107I | GGYRCC | 1 cut(s) | 1433 |
| BspTNI | GGTCTC | 4 cut(s) | 187, 1332, 3460, 3470 |
| BsrDI | GCAATG | 2 cut(s) | 1364, 3247 |
| BsrFI | RCCGGY | 1 cut(s) | 955 |
| BsrI | ACTGG | 1 cut(s) | 2081 |
| BssAI | RCCGGY | 1 cut(s) | 955 |
| BssECI | CCNNGG | 5 cut(s) | 892, 1249, 1687, 1719, 2493 |
| BssNAI | GTATAC | 2 cut(s) | 582, 2212 |
| BssSI | CACGAG | 1 cut(s) | 1442 |
| BssT1I | CCWWGG | 2 cut(s) | 1687, 2493 |
| Bst1107I | GTATAC | 2 cut(s) | 582, 2212 |
| Bst2BI | CACGAG | 1 cut(s) | 1442 |
| Bst2UI | CCWGG | 6 cut(s) | 306, 893, 1251, 1506, 1721, 2479 |
| Bst6I | CTCTTC | 4 cut(s) | 1872, 2262, 2535, 2550 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1370 |
| BstC8I | GCNNGC | 3 cut(s) | 819, 1371, 2151 |
| BstDEI | CTNAG | 7 cut(s) | 290, 361, 507, 540, 1119, 1939, 3474 |
| BstDSI | CCRYGG | 2 cut(s) | 1687, 2493 |
| BstEII | GGTNACC | 2 cut(s) | 1236, 2423 |
| BstHHI | GCGC | 2 cut(s) | 961, 1191 |
| BstMCI | CGRYCG | 1 cut(s) | 1762 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 336, 755, 1370, 1379, 1896, 2300 |
| BstNI | CCWGG | 6 cut(s) | 306, 893, 1251, 1506, 1721, 2479 |
| BstNSI | RCATGY | 6 cut(s) | 22, 87, 1373, 2201, 2355, 2836 |
| BstPI | GGTNACC | 2 cut(s) | 1236, 2423 |
| BstSCI | CCNGG | 7 cut(s) | 304, 713, 891, 1249, 1504, 1719, 2477 |
| BstSFI | CTRYAG | 3 cut(s) | 1390, 1635, 3378 |
| BstV1I | GCAGC | 8 cut(s) | 351, 490, 860, 1899, 3153, 3303, 3482, 3552 |
| BstV2I | GAAGAC | 1 cut(s) | 1713 |
| BstX2I | RGATCY | 3 cut(s) | 839, 1253, 2470 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1273 |
| BstYI | RGATCY | 3 cut(s) | 839, 1253, 2470 |
| BstZ17I | GTATAC | 2 cut(s) | 582, 2212 |
| Bsu15I | ATCGAT | 1 cut(s) | 1758 |
| BsuI | GTATCC | 2 cut(s) | 2599, 2980 |
| BsuRI | GGCC | 3 cut(s) | 243, 398, 891 |
| BsuTUI | ATCGAT | 1 cut(s) | 1758 |
| BtgI | CCRYGG | 2 cut(s) | 1687, 2493 |
| BtgZI | GCGATG | 1 cut(s) | 324 |
| BtsI | GCAGTG | 2 cut(s) | 337, 868 |
| BtsIMutI | CAGTG | 9 cut(s) | 315, 337, 700, 868, 970, 1624, 2629, 2691, 2883 |
| BveI | ACCTGC | 1 cut(s) | 3442 |
| Cac8I | GCNNGC | 3 cut(s) | 819, 1371, 2151 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2420 |
| CciI | TCATGA | 3 cut(s) | 685, 1986, 2806 |
| CfoI | GCGC | 2 cut(s) | 961, 1191 |
| Cfr10I | RCCGGY | 1 cut(s) | 955 |
| Cfr13I | GGNCC | 3 cut(s) | 397, 439, 1502 |
| ClaI | ATCGAT | 1 cut(s) | 1758 |
| CseI | GACGC | 1 cut(s) | 738 |
| CsiI | ACCWGGT | 1 cut(s) | 1504 |
| Csp6I | GTAC | 2 cut(s) | 953, 1592 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 540, 575 |
| CviQI | GTAC | 2 cut(s) | 953, 1592 |
| DdeI | CTNAG | 7 cut(s) | 290, 361, 507, 540, 1119, 1939, 3474 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1748 |
| EaeI | YGGCCR | 1 cut(s) | 241 |
| Eam1104I | CTCTTC | 4 cut(s) | 1872, 2262, 2535, 2550 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1748 |
| EarI | CTCTTC | 4 cut(s) | 1872, 2262, 2535, 2550 |
| EciI | GGCGGA | 2 cut(s) | 743, 951 |
| Ecl136II | GAGCTC | 1 cut(s) | 735 |
| Eco130I | CCWWGG | 2 cut(s) | 1687, 2493 |
| Eco24I | GRGCYC | 1 cut(s) | 737 |
| Eco31I | GGTCTC | 4 cut(s) | 187, 1332, 3460, 3470 |
| Eco32I | GATATC | 2 cut(s) | 72, 2160 |
| Eco47I | GGWCC | 2 cut(s) | 439, 1502 |
| Eco53kI | GAGCTC | 1 cut(s) | 735 |
| Eco57I | CTGAAG | 8 cut(s) | 131, 837, 1390, 1479, 2241, 2397, 3234, 3467 |
| Eco88I | CYCGRG | 1 cut(s) | 257 |
| Eco91I | GGTNACC | 2 cut(s) | 1236, 2423 |
| EcoICRI | GAGCTC | 1 cut(s) | 735 |
| EcoO65I | GGTNACC | 2 cut(s) | 1236, 2423 |
| EcoRII | CCWGG | 6 cut(s) | 304, 891, 1249, 1504, 1719, 2477 |
| EcoRV | GATATC | 2 cut(s) | 72, 2160 |
| EcoT14I | CCWWGG | 2 cut(s) | 1687, 2493 |
| EcoT22I | ATGCAT | 3 cut(s) | 1384, 2199, 3082 |
| EcoT38I | GRGCYC | 1 cut(s) | 737 |
| ErhI | CCWWGG | 2 cut(s) | 1687, 2493 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2517, 2549 |
| FaqI | GGGAC | 3 cut(s) | 389, 452, 1743 |
| FauNDI | CATATG | 1 cut(s) | 825 |
| FbaI | TGATCA | 1 cut(s) | 103 |
| FblI | GTMKAC | 5 cut(s) | 384, 581, 2085, 2211, 2708 |
| Fnu4HI | GCNGC | 8 cut(s) | 340, 479, 849, 1888, 3167, 3317, 3471, 3566 |
| FriOI | GRGCYC | 1 cut(s) | 737 |
| Fsp4HI | GCNGC | 8 cut(s) | 340, 479, 849, 1888, 3167, 3317, 3471, 3566 |
| FspBI | CTAG | 4 cut(s) | 369, 1095, 2168, 2841 |
| GlaI | GCGC | 2 cut(s) | 960, 1190 |
| GluI | GCNGC | 8 cut(s) | 340, 479, 849, 1888, 3167, 3317, 3471, 3566 |
| GsaI | CCCAGC | 1 cut(s) | 2347 |
| GsuI | CTGGAG | 1 cut(s) | 3009 |
| HaeIII | GGCC | 3 cut(s) | 243, 398, 891 |
| HapII | CCGG | 3 cut(s) | 642, 714, 956 |
| HgaI | GACGC | 1 cut(s) | 738 |
| HhaI | GCGC | 2 cut(s) | 961, 1191 |
| Hin6I | GCGC | 2 cut(s) | 959, 1189 |
| HinP1I | GCGC | 2 cut(s) | 959, 1189 |
| HincII | GTYRAC | 4 cut(s) | 1684, 2709, 2851, 3259 |
| HindII | GTYRAC | 4 cut(s) | 1684, 2709, 2851, 3259 |
| HindIII | AAGCTT | 6 cut(s) | 702, 1102, 1402, 1423, 1804, 1903 |
| HpaII | CCGG | 3 cut(s) | 642, 714, 956 |
| Hpy99I | CGWCG | 1 cut(s) | 392 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 336, 755, 1370, 1379, 1896, 2300 |
| HpyF3I | CTNAG | 7 cut(s) | 290, 361, 507, 540, 1119, 1939, 3474 |
| HspAI | GCGC | 2 cut(s) | 959, 1189 |
| Ksp22I | TGATCA | 1 cut(s) | 103 |
| LguI | GCTCTTC | 1 cut(s) | 2535 |
| LmnI | GCTCC | 7 cut(s) | 814, 1045, 1264, 1415, 2077, 2300, 3313 |
| Lsp1109I | GCAGC | 8 cut(s) | 351, 490, 860, 1899, 3153, 3303, 3482, 3552 |
| MabI | ACCWGGT | 1 cut(s) | 1504 |
| MaeI | CTAG | 4 cut(s) | 369, 1095, 2168, 2841 |
| MflI | RGATCY | 3 cut(s) | 839, 1253, 2470 |
| MhlI | GDGCHC | 4 cut(s) | 737, 2693, 2763, 3445 |
| MlsI | TGGCCA | 1 cut(s) | 243 |
| MluNI | TGGCCA | 1 cut(s) | 243 |
| Mox20I | TGGCCA | 1 cut(s) | 243 |
| Mph1103I | ATGCAT | 3 cut(s) | 1384, 2199, 3082 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1696, 2529 |
| MscI | TGGCCA | 1 cut(s) | 243 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1701 |
| Msp20I | TGGCCA | 1 cut(s) | 243 |
| MspA1I | CMGCKG | 3 cut(s) | 212, 2189, 3473 |
| MspI | CCGG | 3 cut(s) | 642, 714, 956 |
| MspR9I | CCNGG | 7 cut(s) | 306, 715, 893, 1251, 1506, 1721, 2479 |
| Mva1269I | GAATGC | 2 cut(s) | 1382, 2407 |
| MvaI | CCWGG | 6 cut(s) | 306, 893, 1251, 1506, 1721, 2479 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 336, 755, 1370, 1379, 1896, 2300 |
| NciI | CCSGG | 1 cut(s) | 715 |
| NcoI | CCATGG | 2 cut(s) | 1687, 2493 |
| NdeI | CATATG | 1 cut(s) | 825 |
| NlaIV | GGNNCC | 8 cut(s) | 226, 303, 399, 440, 1058, 1435, 1800, 2079 |
| NmuCI | GTSAC | 4 cut(s) | 491, 738, 1574, 2765 |
| NsiI | ATGCAT | 3 cut(s) | 1384, 2199, 3082 |
| NspI | RCATGY | 6 cut(s) | 22, 87, 1373, 2201, 2355, 2836 |
| PaeI | GCATGC | 1 cut(s) | 1373 |
| PagI | TCATGA | 3 cut(s) | 685, 1986, 2806 |
| PciI | ACATGT | 2 cut(s) | 18, 2351 |
| PciSI | GCTCTTC | 1 cut(s) | 2535 |
| PctI | GAATGC | 2 cut(s) | 1382, 2407 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1696, 2529 |
| PflFI | GACNNNGTC | 1 cut(s) | 380 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1066 |
| PkrI | GCNGC | 8 cut(s) | 341, 480, 850, 1889, 3168, 3318, 3472, 3567 |
| Ple19I | CGATCG | 1 cut(s) | 1762 |
| PscI | ACATGT | 2 cut(s) | 18, 2351 |
| PshBI | ATTAAT | 2 cut(s) | 465, 1112 |
| PsiI | TTATAA | 1 cut(s) | 200 |
| Psp124BI | GAGCTC | 1 cut(s) | 737 |
| Psp6I | CCWGG | 6 cut(s) | 304, 891, 1249, 1504, 1719, 2477 |
| PspEI | GGTNACC | 2 cut(s) | 1236, 2423 |
| PspFI | CCCAGC | 1 cut(s) | 2343 |
| PspGI | CCWGG | 6 cut(s) | 304, 891, 1249, 1504, 1719, 2477 |
| PspN4I | GGNNCC | 8 cut(s) | 226, 303, 399, 440, 1058, 1435, 1800, 2079 |
| PspPI | GGNCC | 3 cut(s) | 397, 439, 1502 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2420 |
| PsuI | RGATCY | 3 cut(s) | 839, 1253, 2470 |
| PsyI | GACNNNGTC | 1 cut(s) | 380 |
| PvuI | CGATCG | 1 cut(s) | 1762 |
| PvuII | CAGCTG | 1 cut(s) | 3473 |
| RsaI | GTAC | 2 cut(s) | 954, 1593 |
| RsaNI | GTAC | 2 cut(s) | 953, 1592 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1701 |
| SacI | GAGCTC | 1 cut(s) | 737 |
| SalI | GTCGAC | 1 cut(s) | 2707 |
| SapI | GCTCTTC | 1 cut(s) | 2535 |
| SatI | GCNGC | 8 cut(s) | 340, 479, 849, 1888, 3167, 3317, 3471, 3566 |
| Sau96I | GGNCC | 3 cut(s) | 397, 439, 1502 |
| ScrFI | CCNGG | 7 cut(s) | 306, 715, 893, 1251, 1506, 1721, 2479 |
| SduI | GDGCHC | 4 cut(s) | 737, 2693, 2763, 3445 |
| SexAI | ACCWGGT | 1 cut(s) | 1504 |
| SfcI | CTRYAG | 3 cut(s) | 1390, 1635, 3378 |
| SinI | GGWCC | 2 cut(s) | 439, 1502 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1701 |
| SmlI | CTYRAG | 4 cut(s) | 1331, 1900, 2021, 3531 |
| SmoI | CTYRAG | 4 cut(s) | 1331, 1900, 2021, 3531 |
| SpeI | ACTAGT | 1 cut(s) | 2167 |
| SphI | GCATGC | 1 cut(s) | 1373 |
| SsiI | CCGC | 9 cut(s) | 210, 348, 575, 728, 791, 936, 2189, 2714, 3065 |
| SspMI | CTAG | 4 cut(s) | 369, 1095, 2168, 2841 |
| SstI | GAGCTC | 1 cut(s) | 737 |
| StyD4I | CCNGG | 7 cut(s) | 304, 713, 891, 1249, 1504, 1719, 2477 |
| StyI | CCWWGG | 2 cut(s) | 1687, 2493 |
| TscAI | CASTG | 9 cut(s) | 322, 337, 700, 868, 970, 1624, 2629, 2698, 2883 |
| TseFI | GTSAC | 4 cut(s) | 491, 738, 1574, 2765 |
| TseI | GCWGC | 8 cut(s) | 339, 478, 848, 1887, 3166, 3316, 3470, 3565 |
| Tsp45I | GTSAC | 4 cut(s) | 491, 738, 1574, 2765 |
| TspGWI | ACGGA | 3 cut(s) | 986, 1658, 2193 |
| TspRI | CASTG | 9 cut(s) | 322, 337, 700, 868, 970, 1624, 2629, 2698, 2883 |
| Tth111I | GACNNNGTC | 1 cut(s) | 380 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1066 |
| VpaK11BI | GGWCC | 2 cut(s) | 439, 1502 |
| VspI | ATTAAT | 2 cut(s) | 465, 1112 |
| XapI | RAATTY | 7 cut(s) | 355, 1039, 2389, 2802, 2917, 3181, 3331 |
| XceI | RCATGY | 6 cut(s) | 22, 87, 1373, 2201, 2355, 2836 |
| XmiI | GTMKAC | 5 cut(s) | 384, 581, 2085, 2211, 2708 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1696, 2529 |
| XspI | CTAG | 4 cut(s) | 369, 1095, 2168, 2841 |
| Zsp2I | ATGCAT | 3 cut(s) | 1384, 2199, 3082 |