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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G17910 AT5G17910 AT5G17910 |
| fragaria_vesca | FvH4_1g29420 FvH4_1g29420 FvH4_1g29420 FvH4_2g10091 FvH4_2g10092 |
| malus_domestica | MD05G1057800.v1.1 MD12G1015000.v1.1 MD14G1012900.v1.1 |
| prunus_persica | Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1 |
| pyrus_communis | pycom05g04890 pycom12g01220 pycom14g01090 |
| rosa_chinensis | RchiOBHm_Chr3g0495491 RchiOBHm_Chr6g0267051 |
| rosa_laevigata | RLG00000014046 RLG00000022616 |
| rosa_multiflora | Rmu_co8285861.1_g000001 Rmu_sc0004755.1_g000026 Rmu_sc0005599.1_g000001 Rmu_sc0006163.1_g000016 Rmu_sc0013804.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00390490 Rroxscaffold_7G00201200 |
| rosa_rugosa | Rorug03G0273800 Rorug06G0028700 |
| rosa_samantha | Rh3AG321400 Rh3BG356700 Rh3CG353500 Rh3DG356000 Rh6AG150200 Rh6BG151100 Rh6CG146500 Rh6DG135200 |
| rosa_wichuraiana | Rw3G028090 Rw6G013020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 72 |
| AccB1I | GGYRCC | 1 cut(s) | 2225 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1024 |
| AccI | GTMKAC | 5 cut(s) | 363, 551, 856, 2031, 2651 |
| AccII | CGCG | 1 cut(s) | 425 |
| AciI | CCGC | 8 cut(s) | 547, 764, 894, 1955, 2135, 2657, 3176, 3326 |
| AclWI | GGATC | 8 cut(s) | 820, 2654, 2667, 3042, 3055, 3493, 3652, 3667 |
| AcoI | YGGCCR | 2 cut(s) | 223, 1074 |
| AcuI | CTGAAG | 4 cut(s) | 810, 1339, 1428, 2343 |
| AdeI | CACNNNGTG | 1 cut(s) | 923 |
| AfaI | GTAC | 5 cut(s) | 912, 1428, 1776, 2159, 2824 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 617, 920, 1024, 1199, 1675, 2981 |
| AflIII | ACRYGT | 1 cut(s) | 65 |
| AhlI | ACTAGT | 1 cut(s) | 2113 |
| AjnI | CCWGG | 7 cut(s) | 278, 286, 849, 1198, 1668, 2423, 2682 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1007, 1039, 1316, 1348, 3786, 3818 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3651, 3683 |
| Alw21I | GWGCWC | 5 cut(s) | 594, 710, 1997, 2636, 2706 |
| Alw26I | GTCTC | 6 cut(s) | 486, 612, 1281, 2259, 3550, 3712 |
| Alw44I | GTGCAC | 1 cut(s) | 590 |
| AlwI | GGATC | 8 cut(s) | 820, 2654, 2667, 3042, 3055, 3493, 3652, 3667 |
| Ama87I | CYCGRG | 1 cut(s) | 612 |
| AoxI | GGCC | 4 cut(s) | 223, 372, 1074, 2832 |
| ApaLI | GTGCAC | 1 cut(s) | 590 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1683, 1715 |
| AscI | GGCGCGCC | 1 cut(s) | 423 |
| AseI | ATTAAT | 2 cut(s) | 435, 1070 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1645 |
| AspLEI | GCGC | 4 cut(s) | 425, 427, 1149, 2242 |
| AspS9I | GGNCC | 3 cut(s) | 373, 847, 1915 |
| AsuC2I | CCSGG | 1 cut(s) | 688 |
| AvaI | CYCGRG | 1 cut(s) | 612 |
| AvaII | GGWCC | 2 cut(s) | 847, 1915 |
| BaeGI | GKGCMC | 1 cut(s) | 594 |
| BalI | TGGCCA | 1 cut(s) | 225 |
| BamHI | GGATCC | 2 cut(s) | 2659, 3047 |
| BanI | GGYRCC | 1 cut(s) | 2225 |
| BanII | GRGCYC | 1 cut(s) | 710 |
| BauI | CACGAG | 1 cut(s) | 1391 |
| BbsI | GAAGAC | 1 cut(s) | 1662 |
| Bbv12I | GWGCWC | 5 cut(s) | 594, 710, 1997, 2636, 2706 |
| BceAI | ACGGC | 2 cut(s) | 2013, 2670 |
| BciT130I | CCWGG | 7 cut(s) | 280, 288, 851, 1200, 1670, 2425, 2684 |
| BciVI | GTATCC | 2 cut(s) | 2545, 2932 |
| BclI | TGATCA | 1 cut(s) | 2461 |
| BcnI | CCSGG | 1 cut(s) | 688 |
| BcoDI | GTCTC | 6 cut(s) | 486, 612, 1281, 2259, 3550, 3712 |
| BcuI | ACTAGT | 1 cut(s) | 2113 |
| BfaI | CTAG | 7 cut(s) | 182, 1745, 2114, 2367, 2784, 2804, 2903 |
| BfmI | CTRYAG | 2 cut(s) | 1539, 3630 |
| BfuI | GTATCC | 2 cut(s) | 2545, 2932 |
| BlpI | GCTNAGC | 3 cut(s) | 3114, 3264, 3414 |
| Bme1390I | CCNGG | 8 cut(s) | 280, 288, 688, 851, 1200, 1670, 2425, 2684 |
| Bme18I | GGWCC | 2 cut(s) | 847, 1915 |
| BmeT110I | CYCGRG | 1 cut(s) | 612 |
| BmgT120I | GGNCC | 3 cut(s) | 373, 847, 1915 |
| BmiI | GGNNCC | 8 cut(s) | 208, 285, 1016, 1917, 2025, 2227, 2661, 3049 |
| BmrFI | CCNGG | 8 cut(s) | 280, 288, 688, 851, 1200, 1670, 2425, 2684 |
| BpiI | GAAGAC | 1 cut(s) | 1662 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 326, 358 |
| BpmI | CTGGAG | 1 cut(s) | 2961 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 3114, 3264, 3414 |
| BpuEI | CTTGAG | 6 cut(s) | 329, 1265, 1988, 2109, 2720, 3768 |
| BpuMI | CCSGG | 1 cut(s) | 688 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2010 |
| BsaI | GGTCTC | 1 cut(s) | 1281 |
| BsaJI | CCNNGG | 7 cut(s) | 279, 850, 1198, 1636, 1668, 2330, 2439 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 2748, 2762, 2778, 2792, 3214, 3244, 3364, 3394 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 617, 920, 1024, 1199, 1675, 2981 |
| Bse118I | RCCGGY | 2 cut(s) | 386, 913 |
| Bse1I | ACTGG | 3 cut(s) | 2027, 2835, 3051 |
| Bse3DI | GCAATG | 3 cut(s) | 3199, 3349, 3499 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2010 |
| BseBI | CCWGG | 7 cut(s) | 280, 288, 851, 1200, 1670, 2425, 2684 |
| BseDI | CCNNGG | 7 cut(s) | 279, 850, 1198, 1636, 1668, 2330, 2439 |
| BseJI | GATNNNNATC | 1 cut(s) | 2010 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 617, 920, 1024, 1199, 1675, 2981 |
| BseMI | GCAATG | 3 cut(s) | 3199, 3349, 3499 |
| BseNI | ACTGG | 3 cut(s) | 2027, 2835, 3051 |
| BsePI | GCGCGC | 1 cut(s) | 423 |
| BseRI | GAGGAG | 7 cut(s) | 636, 1453, 1841, 1985, 2783, 3035, 3038 |
| BseSI | GKGCMC | 1 cut(s) | 594 |
| BseYI | CCCAGC | 1 cut(s) | 2289 |
| BsgI | GTGCAG | 4 cut(s) | 113, 172, 467, 2849 |
| Bsh1236I | CGCG | 1 cut(s) | 425 |
| BshFI | GGCC | 4 cut(s) | 225, 374, 1076, 2834 |
| BshNI | GGYRCC | 1 cut(s) | 2225 |
| BsiHKAI | GWGCWC | 5 cut(s) | 594, 710, 1997, 2636, 2706 |
| BsiHKCI | CYCGRG | 1 cut(s) | 612 |
| BsiSI | CCGG | 3 cut(s) | 387, 687, 914 |
| BslFI | GGGAC | 1 cut(s) | 2746 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 617, 920, 1024, 1199, 1675, 2981 |
| BsmAI | GTCTC | 6 cut(s) | 486, 612, 1281, 2259, 3550, 3712 |
| BsmFI | GGGAC | 1 cut(s) | 2746 |
| BsmI | GAATGC | 2 cut(s) | 1331, 2353 |
| BsnI | GGCC | 4 cut(s) | 225, 374, 1076, 2834 |
| Bso31I | GGTCTC | 1 cut(s) | 1281 |
| BsoBI | CYCGRG | 1 cut(s) | 612 |
| Bsp1286I | GDGCHC | 5 cut(s) | 594, 710, 1997, 2636, 2706 |
| Bsp1407I | TGTACA | 1 cut(s) | 2157 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 3114, 3264, 3414 |
| Bsp19I | CCATGG | 2 cut(s) | 1636, 2439 |
| BspACI | CCGC | 8 cut(s) | 547, 764, 894, 1955, 2135, 2657, 3176, 3326 |
| BspANI | GGCC | 4 cut(s) | 225, 374, 1076, 2834 |
| BspFNI | CGCG | 1 cut(s) | 425 |
| BspHI | TCATGA | 3 cut(s) | 658, 1989, 2749 |
| BspLI | GGNNCC | 8 cut(s) | 208, 285, 1016, 1917, 2025, 2227, 2661, 3049 |
| BspPI | GGATC | 8 cut(s) | 820, 2654, 2667, 3042, 3055, 3493, 3652, 3667 |
| BspT107I | GGYRCC | 1 cut(s) | 2225 |
| BspTNI | GGTCTC | 1 cut(s) | 1281 |
| BsrDI | GCAATG | 3 cut(s) | 3199, 3349, 3499 |
| BsrFI | RCCGGY | 2 cut(s) | 386, 913 |
| BsrGI | TGTACA | 1 cut(s) | 2157 |
| BsrI | ACTGG | 3 cut(s) | 2027, 2835, 3051 |
| BssAI | RCCGGY | 2 cut(s) | 386, 913 |
| BssECI | CCNNGG | 7 cut(s) | 279, 850, 1198, 1636, 1668, 2330, 2439 |
| BssHII | GCGCGC | 1 cut(s) | 423 |
| BssNAI | GTATAC | 1 cut(s) | 552 |
| BssSI | CACGAG | 1 cut(s) | 1391 |
| BssT1I | CCWWGG | 3 cut(s) | 1636, 2330, 2439 |
| Bst1107I | GTATAC | 1 cut(s) | 552 |
| Bst2BI | CACGAG | 1 cut(s) | 1391 |
| Bst2UI | CCWGG | 7 cut(s) | 280, 288, 851, 1200, 1670, 2425, 2684 |
| Bst6I | CTCTTC | 3 cut(s) | 1818, 2208, 2496 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1319 |
| BstAUI | TGTACA | 1 cut(s) | 2157 |
| BstC8I | GCNNGC | 8 cut(s) | 349, 388, 425, 518, 792, 1320, 2097, 2832 |
| BstDSI | CCRYGG | 2 cut(s) | 1636, 2439 |
| BstFNI | CGCG | 1 cut(s) | 425 |
| BstHHI | GCGC | 4 cut(s) | 425, 427, 1149, 2242 |
| BstMAI | GTCTC | 6 cut(s) | 486, 612, 1281, 2259, 3550, 3712 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 728, 763, 1319, 1328, 1396, 2246 |
| BstNI | CCWGG | 7 cut(s) | 280, 288, 851, 1200, 1670, 2425, 2684 |
| BstNSI | RCATGY | 3 cut(s) | 69, 1192, 1322 |
| BstSCI | CCNGG | 8 cut(s) | 278, 286, 686, 849, 1198, 1668, 2423, 2682 |
| BstSFI | CTRYAG | 2 cut(s) | 1539, 3630 |
| BstSLI | GKGCMC | 1 cut(s) | 594 |
| BstUI | CGCG | 1 cut(s) | 425 |
| BstV2I | GAAGAC | 1 cut(s) | 1662 |
| BstX2I | RGATCY | 4 cut(s) | 812, 2659, 3047, 3659 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1222, 1709 |
| BstYI | RGATCY | 4 cut(s) | 812, 2659, 3047, 3659 |
| BstZ17I | GTATAC | 1 cut(s) | 552 |
| BsuI | GTATCC | 2 cut(s) | 2545, 2932 |
| BsuRI | GGCC | 4 cut(s) | 225, 374, 1076, 2834 |
| BtgI | CCRYGG | 2 cut(s) | 1636, 2439 |
| BtgZI | GCGATG | 2 cut(s) | 306, 1299 |
| BtsI | GCAGTG | 1 cut(s) | 189 |
| Cac8I | GCNNGC | 8 cut(s) | 349, 388, 425, 518, 792, 1320, 2097, 2832 |
| CciI | TCATGA | 3 cut(s) | 658, 1989, 2749 |
| CfoI | GCGC | 4 cut(s) | 425, 427, 1149, 2242 |
| Cfr10I | RCCGGY | 2 cut(s) | 386, 913 |
| Cfr13I | GGNCC | 3 cut(s) | 373, 847, 1915 |
| CseI | GACGC | 2 cut(s) | 374, 2060 |
| Csp6I | GTAC | 5 cut(s) | 911, 1427, 1775, 2158, 2823 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 510, 545, 2916, 2951 |
| CviQI | GTAC | 5 cut(s) | 911, 1427, 1775, 2158, 2823 |
| DraIII | CACNNNGTG | 1 cut(s) | 923 |
| EaeI | YGGCCR | 2 cut(s) | 223, 1074 |
| Eam1104I | CTCTTC | 3 cut(s) | 1818, 2208, 2496 |
| EarI | CTCTTC | 3 cut(s) | 1818, 2208, 2496 |
| EciI | GGCGGA | 4 cut(s) | 909, 2672, 3191, 3341 |
| Ecl136II | GAGCTC | 1 cut(s) | 708 |
| Eco130I | CCWWGG | 3 cut(s) | 1636, 2330, 2439 |
| Eco24I | GRGCYC | 1 cut(s) | 710 |
| Eco31I | GGTCTC | 1 cut(s) | 1281 |
| Eco32I | GATATC | 2 cut(s) | 54, 2106 |
| Eco47I | GGWCC | 2 cut(s) | 847, 1915 |
| Eco53kI | GAGCTC | 1 cut(s) | 708 |
| Eco57I | CTGAAG | 4 cut(s) | 810, 1339, 1428, 2343 |
| Eco88I | CYCGRG | 1 cut(s) | 612 |
| EcoICRI | GAGCTC | 1 cut(s) | 708 |
| EcoRI | GAATTC | 1 cut(s) | 3433 |
| EcoRII | CCWGG | 7 cut(s) | 278, 286, 849, 1198, 1668, 2423, 2682 |
| EcoRV | GATATC | 2 cut(s) | 54, 2106 |
| EcoT14I | CCWWGG | 3 cut(s) | 1636, 2330, 2439 |
| EcoT22I | ATGCAT | 2 cut(s) | 1333, 1621 |
| EcoT38I | GRGCYC | 1 cut(s) | 710 |
| ErhI | CCWWGG | 3 cut(s) | 1636, 2330, 2439 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1426, 1458 |
| FaqI | GGGAC | 1 cut(s) | 2746 |
| FauI | CCCGC | 1 cut(s) | 771 |
| FbaI | TGATCA | 1 cut(s) | 2461 |
| FblI | GTMKAC | 5 cut(s) | 363, 551, 856, 2031, 2651 |
| FriOI | GRGCYC | 1 cut(s) | 710 |
| FspBI | CTAG | 7 cut(s) | 182, 1745, 2114, 2367, 2784, 2804, 2903 |
| GlaI | GCGC | 4 cut(s) | 424, 426, 1148, 2241 |
| GsaI | CCCAGC | 1 cut(s) | 2293 |
| GsuI | CTGGAG | 1 cut(s) | 2961 |
| HaeIII | GGCC | 4 cut(s) | 225, 374, 1076, 2834 |
| HapII | CCGG | 3 cut(s) | 387, 687, 914 |
| HgaI | GACGC | 2 cut(s) | 374, 2060 |
| HhaI | GCGC | 4 cut(s) | 425, 427, 1149, 2242 |
| Hin6I | GCGC | 4 cut(s) | 423, 425, 1147, 2240 |
| HinP1I | GCGC | 4 cut(s) | 423, 425, 1147, 2240 |
| HincII | GTYRAC | 5 cut(s) | 168, 364, 1633, 2652, 2794 |
| HindII | GTYRAC | 5 cut(s) | 168, 364, 1633, 2652, 2794 |
| HindIII | AAGCTT | 5 cut(s) | 1060, 1351, 1372, 1753, 1849 |
| HpaII | CCGG | 3 cut(s) | 387, 687, 914 |
| Hpy99I | CGWCG | 3 cut(s) | 368, 715, 2656 |
| HpyAV | CCTTC | 8 cut(s) | 749, 1041, 1442, 1891, 2188, 3095, 3245, 3395 |
| HpyCH4IV | ACGT | 3 cut(s) | 1659, 3144, 3294 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 728, 763, 1319, 1328, 1396, 2246 |
| HpySE526I | ACGT | 3 cut(s) | 1659, 3144, 3294 |
| HspAI | GCGC | 4 cut(s) | 423, 425, 1147, 2240 |
| KroI | GCCGGC | 1 cut(s) | 386 |
| KroNI | GCCGGC | 1 cut(s) | 388 |
| Ksp22I | TGATCA | 1 cut(s) | 2461 |
| LmnI | GCTCC | 6 cut(s) | 787, 1003, 1213, 1364, 2023, 2686 |
| MaeI | CTAG | 7 cut(s) | 182, 1745, 2114, 2367, 2784, 2804, 2903 |
| MaeII | ACGT | 3 cut(s) | 1659, 3144, 3294 |
| MaeIII | GTNAC | 5 cut(s) | 461, 1457, 1786, 2369, 3220 |
| MfeI | CAATTG | 1 cut(s) | 2256 |
| MflI | RGATCY | 4 cut(s) | 812, 2659, 3047, 3659 |
| MhlI | GDGCHC | 5 cut(s) | 594, 710, 1997, 2636, 2706 |
| MlsI | TGGCCA | 1 cut(s) | 225 |
| MluNI | TGGCCA | 1 cut(s) | 225 |
| MmeI | TCCRAC | 9 cut(s) | 255, 483, 672, 825, 1629, 1726, 1740, 2409, 2539 |
| Mox20I | TGGCCA | 1 cut(s) | 225 |
| Mph1103I | ATGCAT | 2 cut(s) | 1333, 1621 |
| MroNI | GCCGGC | 1 cut(s) | 386 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1645 |
| MscI | TGGCCA | 1 cut(s) | 225 |
| MseI | TTAA | 8 cut(s) | 215, 435, 954, 1070, 1119, 1407, 2019, 2916 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1650 |
| Msp20I | TGGCCA | 1 cut(s) | 225 |
| MspA1I | CMGCKG | 3 cut(s) | 547, 2003, 2135 |
| MspI | CCGG | 3 cut(s) | 387, 687, 914 |
| MspR9I | CCNGG | 8 cut(s) | 280, 288, 688, 851, 1200, 1670, 2425, 2684 |
| MunI | CAATTG | 1 cut(s) | 2256 |
| Mva1269I | GAATGC | 2 cut(s) | 1331, 2353 |
| MvaI | CCWGG | 7 cut(s) | 280, 288, 851, 1200, 1670, 2425, 2684 |
| MvnI | CGCG | 1 cut(s) | 425 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 728, 763, 1319, 1328, 1396, 2246 |
| NaeI | GCCGGC | 1 cut(s) | 388 |
| NciI | CCSGG | 1 cut(s) | 688 |
| NcoI | CCATGG | 2 cut(s) | 1636, 2439 |
| NgoMIV | GCCGGC | 1 cut(s) | 386 |
| NlaIV | GGNNCC | 8 cut(s) | 208, 285, 1016, 1917, 2025, 2227, 2661, 3049 |
| NmeAIII | GCCGAG | 1 cut(s) | 1102 |
| NmuCI | GTSAC | 2 cut(s) | 461, 3220 |
| NsiI | ATGCAT | 2 cut(s) | 1333, 1621 |
| NspI | RCATGY | 3 cut(s) | 69, 1192, 1322 |
| PaeI | GCATGC | 1 cut(s) | 1322 |
| PagI | TCATGA | 3 cut(s) | 658, 1989, 2749 |
| PalAI | GGCGCGCC | 1 cut(s) | 423 |
| PauI | GCGCGC | 1 cut(s) | 423 |
| PciI | ACATGT | 1 cut(s) | 65 |
| PctI | GAATGC | 2 cut(s) | 1331, 2353 |
| PdiI | GCCGGC | 1 cut(s) | 388 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1645 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1024 |
| PfoI | TCCNGGA | 1 cut(s) | 2682 |
| PscI | ACATGT | 1 cut(s) | 65 |
| PshBI | ATTAAT | 2 cut(s) | 435, 1070 |
| PsiI | TTATAA | 1 cut(s) | 72 |
| Psp124BI | GAGCTC | 1 cut(s) | 710 |
| Psp6I | CCWGG | 7 cut(s) | 278, 286, 849, 1198, 1668, 2423, 2682 |
| PspFI | CCCAGC | 1 cut(s) | 2289 |
| PspGI | CCWGG | 7 cut(s) | 278, 286, 849, 1198, 1668, 2423, 2682 |
| PspN4I | GGNNCC | 8 cut(s) | 208, 285, 1016, 1917, 2025, 2227, 2661, 3049 |
| PspPI | GGNCC | 3 cut(s) | 373, 847, 1915 |
| PsuI | RGATCY | 4 cut(s) | 812, 2659, 3047, 3659 |
| PteI | GCGCGC | 1 cut(s) | 423 |
| PvuII | CAGCTG | 1 cut(s) | 2003 |
| RsaI | GTAC | 5 cut(s) | 912, 1428, 1776, 2159, 2824 |
| RsaNI | GTAC | 5 cut(s) | 911, 1427, 1775, 2158, 2823 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1650 |
| SacI | GAGCTC | 1 cut(s) | 710 |
| SalI | GTCGAC | 2 cut(s) | 362, 2650 |
| SaqAI | TTAA | 8 cut(s) | 215, 435, 954, 1070, 1119, 1407, 2019, 2916 |
| Sau96I | GGNCC | 3 cut(s) | 373, 847, 1915 |
| ScrFI | CCNGG | 8 cut(s) | 280, 288, 688, 851, 1200, 1670, 2425, 2684 |
| SduI | GDGCHC | 5 cut(s) | 594, 710, 1997, 2636, 2706 |
| SfcI | CTRYAG | 2 cut(s) | 1539, 3630 |
| SgsI | GGCGCGCC | 1 cut(s) | 423 |
| SinI | GGWCC | 2 cut(s) | 847, 1915 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1650 |
| SmlI | CTYRAG | 6 cut(s) | 308, 1280, 1967, 2124, 2699, 3783 |
| SmoI | CTYRAG | 6 cut(s) | 308, 1280, 1967, 2124, 2699, 3783 |
| SpeI | ACTAGT | 1 cut(s) | 2113 |
| SphI | GCATGC | 1 cut(s) | 1322 |
| SsiI | CCGC | 8 cut(s) | 547, 764, 894, 1955, 2135, 2657, 3176, 3326 |
| SspMI | CTAG | 7 cut(s) | 182, 1745, 2114, 2367, 2784, 2804, 2903 |
| SstI | GAGCTC | 1 cut(s) | 710 |
| StyD4I | CCNGG | 8 cut(s) | 278, 286, 686, 849, 1198, 1668, 2423, 2682 |
| StyI | CCWWGG | 3 cut(s) | 1636, 2330, 2439 |
| TaiI | ACGT | 3 cut(s) | 1662, 3147, 3297 |
| TaqI | TCGA | 7 cut(s) | 363, 392, 571, 1296, 2651, 3431, 3647 |
| TatI | WGTACW | 2 cut(s) | 2157, 2822 |
| Tru1I | TTAA | 8 cut(s) | 215, 435, 954, 1070, 1119, 1407, 2019, 2916 |
| Tru9I | TTAA | 8 cut(s) | 215, 435, 954, 1070, 1119, 1407, 2019, 2916 |
| TseFI | GTSAC | 2 cut(s) | 461, 3220 |
| Tsp45I | GTSAC | 2 cut(s) | 461, 3220 |
| TspGWI | ACGGA | 3 cut(s) | 1328, 1607, 3551 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1024 |
| VneI | GTGCAC | 1 cut(s) | 590 |
| VpaK11BI | GGWCC | 2 cut(s) | 847, 1915 |
| VspI | ATTAAT | 2 cut(s) | 435, 1070 |
| XbaI | TCTAGA | 2 cut(s) | 1744, 2902 |
| XceI | RCATGY | 3 cut(s) | 69, 1192, 1322 |
| XmiI | GTMKAC | 5 cut(s) | 363, 551, 856, 2031, 2651 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1645 |
| XspI | CTAG | 7 cut(s) | 182, 1745, 2114, 2367, 2784, 2804, 2903 |
| Zsp2I | ATGCAT | 2 cut(s) | 1333, 1621 |