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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G17910 AT5G17910 AT5G17910 |
| fragaria_vesca | FvH4_1g29420 FvH4_1g29420 FvH4_1g29420 FvH4_2g10091 FvH4_2g10092 |
| malus_domestica | MD05G1057800.v1.1 MD12G1015000.v1.1 MD14G1012900.v1.1 |
| prunus_persica | Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1 |
| pyrus_communis | pycom05g04890 pycom12g01220 pycom14g01090 |
| rosa_chinensis | RchiOBHm_Chr3g0495491 RchiOBHm_Chr6g0267051 |
| rosa_laevigata | RLG00000014046 RLG00000022616 |
| rosa_multiflora | Rmu_co8285861.1_g000001 Rmu_sc0004755.1_g000026 Rmu_sc0005599.1_g000001 Rmu_sc0006163.1_g000016 Rmu_sc0013804.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00390490 Rroxscaffold_7G00201200 |
| rosa_rugosa | Rorug03G0273800 Rorug06G0028700 |
| rosa_samantha | Rh3AG321400 Rh3BG356700 Rh3CG353500 Rh3DG356000 Rh6AG150200 Rh6BG151100 Rh6CG146500 Rh6DG135200 |
| rosa_wichuraiana | Rw3G028090 Rw6G013020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 751 |
| AccB1I | GGYRCC | 2 cut(s) | 2150, 3055 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3242 |
| AccBSI | CCGCTC | 1 cut(s) | 4265 |
| AccI | GTMKAC | 2 cut(s) | 2079, 3086 |
| AccII | CGCG | 1 cut(s) | 1542 |
| AccIII | TCCGGA | 1 cut(s) | 1505 |
| AciI | CCGC | 6 cut(s) | 299, 609, 3218, 4263, 5255, 5297 |
| AcoI | YGGCCR | 1 cut(s) | 220 |
| AdeI | CACNNNGTG | 2 cut(s) | 605, 3055 |
| AfaI | GTAC | 7 cut(s) | 1395, 1726, 2128, 2166, 2548, 3304, 4983 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 178, 540, 997, 1172, 2473, 2474, 3242, 5081 |
| AflIII | ACRYGT | 2 cut(s) | 62, 2161 |
| AgeI | ACCGGT | 1 cut(s) | 2911 |
| AhlI | ACTAGT | 3 cut(s) | 3968, 4279, 4976 |
| AjnI | CCWGG | 8 cut(s) | 1171, 1198, 1352, 1645, 1692, 1744, 2194, 4087 |
| AloI | GAACNNNNNNTCC | 8 cut(s) | 3138, 3170, 3300, 3332, 3405, 3437, 3687, 3719 |
| Alw21I | GWGCWC | 3 cut(s) | 1254, 1908, 4500 |
| Alw44I | GTGCAC | 1 cut(s) | 1904 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 638, 1976, 2843, 3311, 5135 |
| Ama87I | CYCGRG | 1 cut(s) | 288 |
| Aor13HI | TCCGGA | 1 cut(s) | 1505 |
| AoxI | GGCC | 4 cut(s) | 220, 1643, 1673, 1690 |
| ApaLI | GTGCAC | 1 cut(s) | 1904 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 2600, 2632, 2898, 2930, 3068, 3100 |
| AseI | ATTAAT | 2 cut(s) | 3138, 3813 |
| AsiGI | ACCGGT | 1 cut(s) | 2911 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1606 |
| AspLEI | GCGC | 1 cut(s) | 1542 |
| AspS9I | GGNCC | 4 cut(s) | 204, 1673, 1690, 1984 |
| AsuC2I | CCSGG | 3 cut(s) | 289, 290, 833 |
| AsuII | TTCGAA | 2 cut(s) | 2312, 2606 |
| AvaI | CYCGRG | 1 cut(s) | 288 |
| AvaII | GGWCC | 2 cut(s) | 204, 1984 |
| AxyI | CCTNAGG | 1 cut(s) | 3186 |
| BaeGI | GKGCMC | 2 cut(s) | 1908, 3116 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 379, 412, 4122, 4155, 4473, 4506 |
| BanI | GGYRCC | 2 cut(s) | 2150, 3055 |
| BanII | GRGCYC | 2 cut(s) | 1254, 4500 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5143, 5175 |
| BauI | CACGAG | 3 cut(s) | 95, 3050, 3541 |
| BbsI | GAAGAC | 3 cut(s) | 588, 1623, 3539 |
| Bbv12I | GWGCWC | 3 cut(s) | 1254, 1908, 4500 |
| BceAI | ACGGC | 2 cut(s) | 1658, 2718 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 642, 676, 1903, 1937, 4804, 4838 |
| BciT130I | CCWGG | 8 cut(s) | 1173, 1200, 1354, 1647, 1694, 1746, 2196, 4089 |
| BciVI | GTATCC | 1 cut(s) | 814 |
| BclI | TGATCA | 4 cut(s) | 583, 2374, 3046, 3175 |
| BcnI | CCSGG | 3 cut(s) | 289, 290, 833 |
| BcuI | ACTAGT | 3 cut(s) | 3968, 4279, 4976 |
| BfmI | CTRYAG | 3 cut(s) | 125, 3249, 3690 |
| BfuAI | ACCTGC | 1 cut(s) | 751 |
| BfuI | GTATCC | 1 cut(s) | 814 |
| BglII | AGATCT | 3 cut(s) | 1369, 1513, 3857 |
| BmcAI | AGTACT | 1 cut(s) | 2548 |
| Bme18I | GGWCC | 2 cut(s) | 204, 1984 |
| BmeT110I | CYCGRG | 1 cut(s) | 288 |
| BmgT120I | GGNCC | 4 cut(s) | 204, 1673, 1690, 1984 |
| BmrI | ACTGGG | 1 cut(s) | 1697 |
| BmuI | ACTGGG | 1 cut(s) | 1697 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2292 |
| BpiI | GAAGAC | 3 cut(s) | 588, 1623, 3539 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2555, 2587 |
| BpmI | CTGGAG | 1 cut(s) | 509 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1248 |
| Bpu14I | TTCGAA | 2 cut(s) | 2312, 2606 |
| BpuEI | CTTGAG | 2 cut(s) | 1238, 2476 |
| BpuMI | CCSGG | 3 cut(s) | 289, 290, 833 |
| BsaAI | YACGTR | 2 cut(s) | 2168, 2399 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1932 |
| BsaI | GGTCTC | 2 cut(s) | 1375, 3756 |
| BsaWI | WCCGGW | 2 cut(s) | 1505, 2911 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1251, 1281, 1722, 1752, 3712, 3742, 4354, 4384 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 178, 540, 997, 1172, 2473, 2474, 3242, 5081 |
| Bse118I | RCCGGY | 3 cut(s) | 565, 2208, 2911 |
| Bse1I | ACTGG | 9 cut(s) | 1692, 1949, 2646, 2848, 2902, 3415, 3703, 4011, 4453 |
| Bse21I | CCTNAGG | 1 cut(s) | 3186 |
| Bse3DI | GCAATG | 4 cut(s) | 2677, 3114, 3288, 3393 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1932 |
| BseAI | TCCGGA | 1 cut(s) | 1505 |
| BseBI | CCWGG | 8 cut(s) | 1173, 1200, 1354, 1647, 1694, 1746, 2196, 4089 |
| BseJI | GATNNNNATC | 1 cut(s) | 1932 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 178, 540, 997, 1172, 2473, 2474, 3242, 5081 |
| BseMI | GCAATG | 4 cut(s) | 2677, 3114, 3288, 3393 |
| BseNI | ACTGG | 9 cut(s) | 1692, 1949, 2646, 2848, 2902, 3415, 3703, 4011, 4453 |
| BseRI | GAGGAG | 3 cut(s) | 855, 2348, 3327 |
| BseSI | GKGCMC | 2 cut(s) | 1908, 3116 |
| BseYI | CCCAGC | 1 cut(s) | 1969 |
| BsgI | GTGCAG | 3 cut(s) | 2622, 4473, 5040 |
| Bsh1236I | CGCG | 1 cut(s) | 1542 |
| BshFI | GGCC | 4 cut(s) | 222, 1645, 1675, 1692 |
| BshNI | GGYRCC | 2 cut(s) | 2150, 3055 |
| BshTI | ACCGGT | 1 cut(s) | 2911 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1254, 1908, 4500 |
| BsiHKCI | CYCGRG | 1 cut(s) | 288 |
| BsiSI | CCGG | 7 cut(s) | 289, 566, 832, 1506, 1676, 2209, 2912 |
| BslFI | GGGAC | 5 cut(s) | 217, 739, 974, 1277, 2444 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 178, 540, 997, 1172, 2473, 2474, 3242, 5081 |
| BsmFI | GGGAC | 5 cut(s) | 217, 739, 974, 1277, 2444 |
| BsmI | GAATGC | 4 cut(s) | 1606, 1714, 1926, 2207 |
| BsnI | GGCC | 4 cut(s) | 222, 1645, 1675, 1692 |
| Bso31I | GGTCTC | 2 cut(s) | 1375, 3756 |
| BsoBI | CYCGRG | 1 cut(s) | 288 |
| Bsp119I | TTCGAA | 2 cut(s) | 2312, 2606 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1254, 1908, 3116, 4500 |
| Bsp13I | TCCGGA | 1 cut(s) | 1505 |
| Bsp1407I | TGTACA | 1 cut(s) | 4981 |
| BspACI | CCGC | 6 cut(s) | 299, 609, 3218, 4263, 5255, 5297 |
| BspANI | GGCC | 4 cut(s) | 222, 1645, 1675, 1692 |
| BspEI | TCCGGA | 1 cut(s) | 1505 |
| BspFNI | CGCG | 1 cut(s) | 1542 |
| BspHI | TCATGA | 1 cut(s) | 2371 |
| BspMAI | CTGCAG | 1 cut(s) | 129 |
| BspMI | ACCTGC | 1 cut(s) | 751 |
| BspQI | GCTCTTC | 1 cut(s) | 2219 |
| BspT104I | TTCGAA | 2 cut(s) | 2312, 2606 |
| BspT107I | GGYRCC | 2 cut(s) | 2150, 3055 |
| BspTNI | GGTCTC | 2 cut(s) | 1375, 3756 |
| BsrBI | CCGCTC | 1 cut(s) | 4265 |
| BsrDI | GCAATG | 4 cut(s) | 2677, 3114, 3288, 3393 |
| BsrFI | RCCGGY | 3 cut(s) | 565, 2208, 2911 |
| BsrGI | TGTACA | 1 cut(s) | 4981 |
| BsrI | ACTGG | 9 cut(s) | 1692, 1949, 2646, 2848, 2902, 3415, 3703, 4011, 4453 |
| BssAI | RCCGGY | 3 cut(s) | 565, 2208, 2911 |
| BssSI | CACGAG | 3 cut(s) | 95, 3050, 3541 |
| BssT1I | CCWWGG | 5 cut(s) | 2814, 3120, 3282, 3669, 5106 |
| Bst2BI | CACGAG | 3 cut(s) | 95, 3050, 3541 |
| Bst2UI | CCWGG | 8 cut(s) | 1173, 1200, 1354, 1647, 1694, 1746, 2196, 4089 |
| Bst6I | CTCTTC | 5 cut(s) | 458, 843, 2182, 2219, 3573 |
| BstAUI | TGTACA | 1 cut(s) | 4981 |
| BstBAI | YACGTR | 2 cut(s) | 2168, 2399 |
| BstBI | TTCGAA | 2 cut(s) | 2312, 2606 |
| BstC8I | GCNNGC | 9 cut(s) | 224, 567, 1316, 1320, 1324, 1714, 2328, 4221, 4572 |
| BstFNI | CGCG | 1 cut(s) | 1542 |
| BstHHI | GCGC | 1 cut(s) | 1542 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 305, 680, 1363, 1672, 2593, 3512, 4622 |
| BstNI | CCWGG | 8 cut(s) | 1173, 1200, 1354, 1647, 1694, 1746, 2196, 4089 |
| BstNSI | RCATGY | 3 cut(s) | 66, 1322, 2165 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2292 |
| BstSFI | CTRYAG | 3 cut(s) | 125, 3249, 3690 |
| BstSLI | GKGCMC | 2 cut(s) | 1908, 3116 |
| BstUI | CGCG | 1 cut(s) | 1542 |
| BstV2I | GAAGAC | 3 cut(s) | 588, 1623, 3539 |
| BstX2I | RGATCY | 9 cut(s) | 1369, 1513, 2191, 3245, 3308, 3413, 3857, 5278, 5320 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1670, 3109 |
| BstYI | RGATCY | 9 cut(s) | 1369, 1513, 2191, 3245, 3308, 3413, 3857, 5278, 5320 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3186 |
| BsuI | GTATCC | 1 cut(s) | 814 |
| BsuRI | GGCC | 4 cut(s) | 222, 1645, 1675, 1692 |
| BtgZI | GCGATG | 1 cut(s) | 891 |
| BtsI | GCAGTG | 9 cut(s) | 3663, 3825, 3984, 4110, 4341, 4461, 4611, 4716, 4995 |
| BveI | ACCTGC | 1 cut(s) | 751 |
| Cac8I | GCNNGC | 9 cut(s) | 224, 567, 1316, 1320, 1324, 1714, 2328, 4221, 4572 |
| CaiI | CAGNNNCTG | 5 cut(s) | 638, 1976, 2843, 3311, 5135 |
| CciI | TCATGA | 1 cut(s) | 2371 |
| CfoI | GCGC | 1 cut(s) | 1542 |
| Cfr10I | RCCGGY | 3 cut(s) | 565, 2208, 2911 |
| Cfr13I | GGNCC | 4 cut(s) | 204, 1673, 1690, 1984 |
| Cfr9I | CCCGGG | 1 cut(s) | 288 |
| CseI | GACGC | 1 cut(s) | 2982 |
| Csp6I | GTAC | 7 cut(s) | 1394, 1725, 2127, 2165, 2547, 3303, 4982 |
| CspAI | ACCGGT | 1 cut(s) | 2911 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 528, 563 |
| CviQI | GTAC | 7 cut(s) | 1394, 1725, 2127, 2165, 2547, 3303, 4982 |
| DraI | TTTAAA | 3 cut(s) | 4518, 4677, 5061 |
| DraIII | CACNNNGTG | 2 cut(s) | 605, 3055 |
| EaeI | YGGCCR | 1 cut(s) | 220 |
| Eam1104I | CTCTTC | 5 cut(s) | 458, 843, 2182, 2219, 3573 |
| EarI | CTCTTC | 5 cut(s) | 458, 843, 2182, 2219, 3573 |
| EciI | GGCGGA | 1 cut(s) | 624 |
| Ecl136II | GAGCTC | 2 cut(s) | 1252, 4498 |
| Eco130I | CCWWGG | 5 cut(s) | 2814, 3120, 3282, 3669, 5106 |
| Eco24I | GRGCYC | 2 cut(s) | 1254, 4500 |
| Eco31I | GGTCTC | 2 cut(s) | 1375, 3756 |
| Eco47I | GGWCC | 2 cut(s) | 204, 1984 |
| Eco53kI | GAGCTC | 2 cut(s) | 1252, 4498 |
| Eco81I | CCTNAGG | 1 cut(s) | 3186 |
| Eco88I | CYCGRG | 1 cut(s) | 288 |
| EcoICRI | GAGCTC | 2 cut(s) | 1252, 4498 |
| EcoO109I | RGGNCCY | 2 cut(s) | 204, 1984 |
| EcoRI | GAATTC | 3 cut(s) | 3937, 4108, 5197 |
| EcoRII | CCWGG | 8 cut(s) | 1171, 1198, 1352, 1645, 1692, 1744, 2194, 4087 |
| EcoT14I | CCWWGG | 5 cut(s) | 2814, 3120, 3282, 3669, 5106 |
| EcoT38I | GRGCYC | 2 cut(s) | 1254, 4500 |
| ErhI | CCWWGG | 5 cut(s) | 2814, 3120, 3282, 3669, 5106 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1594, 1626 |
| FaqI | GGGAC | 5 cut(s) | 217, 739, 974, 1277, 2444 |
| FauI | CCCGC | 2 cut(s) | 5248, 5290 |
| FauNDI | CATATG | 2 cut(s) | 510, 750 |
| FbaI | TGATCA | 4 cut(s) | 583, 2374, 3046, 3175 |
| FblI | GTMKAC | 2 cut(s) | 2079, 3086 |
| FriOI | GRGCYC | 2 cut(s) | 1254, 4500 |
| GlaI | GCGC | 1 cut(s) | 1541 |
| GsaI | CCCAGC | 1 cut(s) | 1973 |
| GsuI | CTGGAG | 1 cut(s) | 509 |
| HaeIII | GGCC | 4 cut(s) | 222, 1645, 1675, 1692 |
| HapII | CCGG | 7 cut(s) | 289, 566, 832, 1506, 1676, 2209, 2912 |
| HgaI | GACGC | 1 cut(s) | 2982 |
| HhaI | GCGC | 1 cut(s) | 1542 |
| Hin6I | GCGC | 1 cut(s) | 1540 |
| HinP1I | GCGC | 1 cut(s) | 1540 |
| HincII | GTYRAC | 3 cut(s) | 1594, 2997, 3087 |
| HindII | GTYRAC | 3 cut(s) | 1594, 2997, 3087 |
| HindIII | AAGCTT | 5 cut(s) | 1578, 1714, 1816, 4217, 4568 |
| HpaII | CCGG | 7 cut(s) | 289, 566, 832, 1506, 1676, 2209, 2912 |
| Hpy166II | GTNNAC | 7 cut(s) | 933, 1594, 1906, 2080, 2997, 3087, 4982 |
| Hpy8I | GTNNAC | 7 cut(s) | 933, 1594, 1906, 2080, 2997, 3087, 4982 |
| Hpy99I | CGWCG | 2 cut(s) | 4142, 4493 |
| HpyCH4IV | ACGT | 5 cut(s) | 2167, 2398, 4137, 4488, 5112 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 305, 680, 1363, 1672, 2593, 3512, 4622 |
| HpySE526I | ACGT | 5 cut(s) | 2167, 2398, 4137, 4488, 5112 |
| HspAI | GCGC | 1 cut(s) | 1540 |
| KflI | GGGWCCC | 1 cut(s) | 204 |
| Kpn2I | TCCGGA | 1 cut(s) | 1505 |
| KroI | GCCGGC | 1 cut(s) | 565 |
| KroNI | GCCGGC | 1 cut(s) | 567 |
| Ksp22I | TGATCA | 4 cut(s) | 583, 2374, 3046, 3175 |
| LguI | GCTCTTC | 1 cut(s) | 2219 |
| LmnI | GCTCC | 8 cut(s) | 484, 739, 976, 1186, 1945, 2563, 3187, 4503 |
| MaeII | ACGT | 5 cut(s) | 2167, 2398, 4137, 4488, 5112 |
| MbiI | CCGCTC | 1 cut(s) | 4265 |
| MfeI | CAATTG | 1 cut(s) | 411 |
| MflI | RGATCY | 9 cut(s) | 1369, 1513, 2191, 3245, 3308, 3413, 3857, 5278, 5320 |
| MhlI | GDGCHC | 4 cut(s) | 1254, 1908, 3116, 4500 |
| MmeI | TCCRAC | 3 cut(s) | 2434, 3739, 4711 |
| MroI | TCCGGA | 1 cut(s) | 1505 |
| MroNI | GCCGGC | 1 cut(s) | 565 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1606 |
| MslI | CAYNNNNRTG | 5 cut(s) | 509, 2166, 2235, 4677, 5214 |
| MspA1I | CMGCKG | 1 cut(s) | 299 |
| MspI | CCGG | 7 cut(s) | 289, 566, 832, 1506, 1676, 2209, 2912 |
| MunI | CAATTG | 1 cut(s) | 411 |
| Mva1269I | GAATGC | 4 cut(s) | 1606, 1714, 1926, 2207 |
| MvaI | CCWGG | 8 cut(s) | 1173, 1200, 1354, 1647, 1694, 1746, 2196, 4089 |
| MvnI | CGCG | 1 cut(s) | 1542 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 305, 680, 1363, 1672, 2593, 3512, 4622 |
| NaeI | GCCGGC | 1 cut(s) | 567 |
| NciI | CCSGG | 3 cut(s) | 289, 290, 833 |
| NdeI | CATATG | 2 cut(s) | 510, 750 |
| NgoMIV | GCCGGC | 1 cut(s) | 565 |
| NmeAIII | GCCGAG | 1 cut(s) | 478 |
| NmuCI | GTSAC | 6 cut(s) | 43, 160, 310, 663, 2698, 2914 |
| NspI | RCATGY | 3 cut(s) | 66, 1322, 2165 |
| NspV | TTCGAA | 2 cut(s) | 2312, 2606 |
| PaeI | GCATGC | 1 cut(s) | 1322 |
| PagI | TCATGA | 1 cut(s) | 2371 |
| PciI | ACATGT | 2 cut(s) | 62, 2161 |
| PciSI | GCTCTTC | 1 cut(s) | 2219 |
| PctI | GAATGC | 4 cut(s) | 1606, 1714, 1926, 2207 |
| PdiI | GCCGGC | 1 cut(s) | 567 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1606 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3242 |
| PinAI | ACCGGT | 1 cut(s) | 2911 |
| Ppu21I | YACGTR | 2 cut(s) | 2168, 2399 |
| PpuMI | RGGWCCY | 2 cut(s) | 204, 1984 |
| PscI | ACATGT | 2 cut(s) | 62, 2161 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2292 |
| PshBI | ATTAAT | 2 cut(s) | 3138, 3813 |
| Psp124BI | GAGCTC | 2 cut(s) | 1254, 4500 |
| Psp5II | RGGWCCY | 2 cut(s) | 204, 1984 |
| Psp6I | CCWGG | 8 cut(s) | 1171, 1198, 1352, 1645, 1692, 1744, 2194, 4087 |
| PspFI | CCCAGC | 1 cut(s) | 1969 |
| PspGI | CCWGG | 8 cut(s) | 1171, 1198, 1352, 1645, 1692, 1744, 2194, 4087 |
| PspPI | GGNCC | 4 cut(s) | 204, 1673, 1690, 1984 |
| PspPPI | RGGWCCY | 2 cut(s) | 204, 1984 |
| PstI | CTGCAG | 1 cut(s) | 129 |
| PstNI | CAGNNNCTG | 5 cut(s) | 638, 1976, 2843, 3311, 5135 |
| PsuI | RGATCY | 9 cut(s) | 1369, 1513, 2191, 3245, 3308, 3413, 3857, 5278, 5320 |
| RsaI | GTAC | 7 cut(s) | 1395, 1726, 2128, 2166, 2548, 3304, 4983 |
| RsaNI | GTAC | 7 cut(s) | 1394, 1725, 2127, 2165, 2547, 3303, 4982 |
| RseI | CAYNNNNRTG | 5 cut(s) | 509, 2166, 2235, 4677, 5214 |
| SacI | GAGCTC | 2 cut(s) | 1254, 4500 |
| SalI | GTCGAC | 1 cut(s) | 3085 |
| SapI | GCTCTTC | 1 cut(s) | 2219 |
| Sau96I | GGNCC | 4 cut(s) | 204, 1673, 1690, 1984 |
| ScaI | AGTACT | 1 cut(s) | 2548 |
| SduI | GDGCHC | 4 cut(s) | 1254, 1908, 3116, 4500 |
| SfcI | CTRYAG | 3 cut(s) | 125, 3249, 3690 |
| SfuI | TTCGAA | 2 cut(s) | 2312, 2606 |
| SinI | GGWCC | 2 cut(s) | 204, 1984 |
| SmaI | CCCGGG | 1 cut(s) | 290 |
| SmiI | ATTTAAAT | 1 cut(s) | 4677 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 509, 2166, 2235, 4677, 5214 |
| SmlI | CTYRAG | 2 cut(s) | 1253, 2491 |
| SmoI | CTYRAG | 2 cut(s) | 1253, 2491 |
| SpeI | ACTAGT | 3 cut(s) | 3968, 4279, 4976 |
| SphI | GCATGC | 1 cut(s) | 1322 |
| SsiI | CCGC | 6 cut(s) | 299, 609, 3218, 4263, 5255, 5297 |
| SstI | GAGCTC | 2 cut(s) | 1254, 4500 |
| StyI | CCWWGG | 5 cut(s) | 2814, 3120, 3282, 3669, 5106 |
| SwaI | ATTTAAAT | 1 cut(s) | 4677 |
| TaiI | ACGT | 5 cut(s) | 2170, 2401, 4140, 4491, 5115 |
| TatI | WGTACW | 3 cut(s) | 2546, 3302, 4981 |
| TauI | GCSGC | 1 cut(s) | 3220 |
| TseFI | GTSAC | 6 cut(s) | 43, 160, 310, 663, 2698, 2914 |
| Tsp45I | GTSAC | 6 cut(s) | 43, 160, 310, 663, 2698, 2914 |
| TspGWI | ACGGA | 1 cut(s) | 2065 |
| TspMI | CCCGGG | 1 cut(s) | 288 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3242 |
| VneI | GTGCAC | 1 cut(s) | 1904 |
| VpaK11BI | GGWCC | 2 cut(s) | 204, 1984 |
| VspI | ATTAAT | 2 cut(s) | 3138, 3813 |
| XceI | RCATGY | 3 cut(s) | 66, 1322, 2165 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1700, 4018 |
| XmaI | CCCGGG | 1 cut(s) | 288 |
| XmiI | GTMKAC | 2 cut(s) | 2079, 3086 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1606 |
| ZrmI | AGTACT | 1 cut(s) | 2548 |