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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G17910 AT5G17910 AT5G17910 |
| fragaria_vesca | FvH4_1g29420 FvH4_1g29420 FvH4_1g29420 FvH4_2g10091 FvH4_2g10092 |
| malus_domestica | MD05G1057800.v1.1 MD12G1015000.v1.1 MD14G1012900.v1.1 |
| prunus_persica | Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1 |
| pyrus_communis | pycom05g04890 pycom12g01220 pycom14g01090 |
| rosa_chinensis | RchiOBHm_Chr3g0495491 RchiOBHm_Chr6g0267051 |
| rosa_laevigata | RLG00000014046 RLG00000022616 |
| rosa_multiflora | Rmu_co8285861.1_g000001 Rmu_sc0004755.1_g000026 Rmu_sc0005599.1_g000001 Rmu_sc0006163.1_g000016 Rmu_sc0013804.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00390490 Rroxscaffold_7G00201200 |
| rosa_rugosa | Rorug03G0273800 Rorug06G0028700 |
| rosa_samantha | Rh3AG321400 Rh3BG356700 Rh3CG353500 Rh3DG356000 Rh6AG150200 Rh6BG151100 Rh6CG146500 Rh6DG135200 |
| rosa_wichuraiana | Rw3G028090 Rw6G013020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2249 |
| Acc36I | ACCTGC | 2 cut(s) | 4175, 4616 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 206, 1349, 3158, 4698 |
| AccI | GTMKAC | 3 cut(s) | 625, 2097, 3869 |
| AciI | CCGC | 3 cut(s) | 18, 450, 3749 |
| AclI | AACGTT | 1 cut(s) | 4398 |
| AclWI | GGATC | 9 cut(s) | 877, 1295, 2023, 2662, 2710, 2725, 3100, 4327, 4444 |
| AcoI | YGGCCR | 2 cut(s) | 331, 1786 |
| AcuI | CTGAAG | 6 cut(s) | 801, 1189, 1492, 2184, 2628, 2928 |
| AdeI | CACNNNGTG | 1 cut(s) | 1070 |
| AfaI | GTAC | 6 cut(s) | 77, 239, 1581, 1918, 3223, 4078 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 206, 456, 779, 1349, 2506, 3158, 4698 |
| AflIII | ACRYGT | 1 cut(s) | 173 |
| AjnI | CCWGG | 2 cut(s) | 1348, 4222 |
| AleI | CACNNNNGTG | 1 cut(s) | 753 |
| Alw21I | GWGCWC | 3 cut(s) | 1488, 2400, 2728 |
| AlwI | GGATC | 9 cut(s) | 877, 1295, 2023, 2662, 2710, 2725, 3100, 4327, 4444 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2906, 3902 |
| Ama87I | CYCGRG | 2 cut(s) | 399, 2081 |
| AoxI | GGCC | 2 cut(s) | 331, 1786 |
| ApeKI | GCWGC | 6 cut(s) | 217, 1694, 2788, 3260, 3646, 3970 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 938, 970 |
| AseI | ATTAAT | 3 cut(s) | 684, 1095, 3381 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1202, 4106 |
| AspS9I | GGNCC | 4 cut(s) | 315, 1517, 2176, 2497 |
| AsuHPI | GGTGA | 9 cut(s) | 767, 794, 843, 2051, 2498, 3169, 3653, 3815, 4298 |
| AsuII | TTCGAA | 3 cut(s) | 1000, 1652, 2807 |
| AvaI | CYCGRG | 2 cut(s) | 399, 2081 |
| AvaII | GGWCC | 4 cut(s) | 315, 1517, 2176, 2497 |
| BalI | TGGCCA | 2 cut(s) | 333, 1788 |
| BanII | GRGCYC | 1 cut(s) | 4469 |
| Bbv12I | GWGCWC | 3 cut(s) | 1488, 2400, 2728 |
| BbvCI | CCTCAGC | 1 cut(s) | 60 |
| BbvI | GCAGC | 6 cut(s) | 204, 1706, 2775, 3272, 3633, 3957 |
| BceAI | ACGGC | 2 cut(s) | 1063, 4386 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1354, 1388 |
| BciT130I | CCWGG | 2 cut(s) | 1350, 4224 |
| BclI | TGATCA | 3 cut(s) | 757, 1426, 3433 |
| BfmI | CTRYAG | 4 cut(s) | 483, 1692, 3228, 3276 |
| BfuAI | ACCTGC | 2 cut(s) | 4175, 4616 |
| BisI | GCNGC | 6 cut(s) | 218, 1695, 2789, 3261, 3647, 3971 |
| BlsI | GCNGC | 6 cut(s) | 219, 1696, 2790, 3262, 3648, 3972 |
| Bme1390I | CCNGG | 2 cut(s) | 1350, 4224 |
| Bme18I | GGWCC | 4 cut(s) | 315, 1517, 2176, 2497 |
| BmeT110I | CYCGRG | 2 cut(s) | 399, 2081 |
| BmgT120I | GGNCC | 4 cut(s) | 315, 1517, 2176, 2497 |
| BmiI | GGNNCC | 6 cut(s) | 316, 317, 1157, 1902, 2139, 2177 |
| BmrFI | CCNGG | 2 cut(s) | 1350, 4224 |
| BpmI | CTGGAG | 3 cut(s) | 1581, 2145, 4496 |
| Bpu10I | CCTNAGC | 2 cut(s) | 60, 1528 |
| Bpu14I | TTCGAA | 3 cut(s) | 1000, 1652, 2807 |
| BpuEI | CTTGAG | 2 cut(s) | 2137, 2712 |
| Bsa29I | ATCGAT | 3 cut(s) | 730, 1364, 4142 |
| BsaBI | GATNNNNATC | 2 cut(s) | 726, 2253 |
| BsaI | GGTCTC | 2 cut(s) | 1561, 4472 |
| BsaJI | CCNNGG | 8 cut(s) | 1476, 1789, 2373, 2500, 2691, 3561, 3711, 3873 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 206, 456, 779, 1349, 2506, 3158, 4698 |
| Bse1I | ACTGG | 4 cut(s) | 334, 2704, 3200, 4342 |
| Bse3DI | GCAATG | 4 cut(s) | 381, 1645, 3543, 3586 |
| Bse8I | GATNNNNATC | 2 cut(s) | 726, 2253 |
| BseBI | CCWGG | 2 cut(s) | 1350, 4224 |
| BseCI | ATCGAT | 3 cut(s) | 730, 1364, 4142 |
| BseDI | CCNNGG | 8 cut(s) | 1476, 1789, 2373, 2500, 2691, 3561, 3711, 3873 |
| BseJI | GATNNNNATC | 2 cut(s) | 726, 2253 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 206, 456, 779, 1349, 2506, 3158, 4698 |
| BseMI | GCAATG | 4 cut(s) | 381, 1645, 3543, 3586 |
| BseMII | CTCAG | 8 cut(s) | 51, 554, 2259, 3801, 3963, 4125, 4401, 4518 |
| BseNI | ACTGG | 4 cut(s) | 334, 2704, 3200, 4342 |
| BseRI | GAGGAG | 1 cut(s) | 1198 |
| BseXI | GCAGC | 6 cut(s) | 204, 1706, 2775, 3272, 3633, 3957 |
| BsgI | GTGCAG | 1 cut(s) | 4362 |
| BshFI | GGCC | 2 cut(s) | 333, 1788 |
| BshVI | ATCGAT | 3 cut(s) | 730, 1364, 4142 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1488, 2400, 2728 |
| BsiHKCI | CYCGRG | 2 cut(s) | 399, 2081 |
| BslFI | GGGAC | 3 cut(s) | 61, 328, 3458 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 206, 456, 779, 1349, 2506, 3158, 4698 |
| BsmFI | GGGAC | 3 cut(s) | 61, 328, 3458 |
| BsmI | GAATGC | 1 cut(s) | 219 |
| BsnI | GGCC | 2 cut(s) | 333, 1788 |
| Bso31I | GGTCTC | 2 cut(s) | 1561, 4472 |
| BsoBI | CYCGRG | 2 cut(s) | 399, 2081 |
| Bsp119I | TTCGAA | 3 cut(s) | 1000, 1652, 2807 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1488, 2400, 2728, 4469 |
| Bsp1407I | TGTACA | 1 cut(s) | 237 |
| Bsp19I | CCATGG | 2 cut(s) | 1789, 2373 |
| BspACI | CCGC | 3 cut(s) | 18, 450, 3749 |
| BspANI | GGCC | 2 cut(s) | 333, 1788 |
| BspCNI | CTCAG | 8 cut(s) | 52, 555, 2258, 3800, 3962, 4124, 4400, 4519 |
| BspDI | ATCGAT | 3 cut(s) | 730, 1364, 4142 |
| BspHI | TCATGA | 2 cut(s) | 1669, 4564 |
| BspLI | GGNNCC | 6 cut(s) | 316, 317, 1157, 1902, 2139, 2177 |
| BspMAI | CTGCAG | 2 cut(s) | 487, 1696 |
| BspMI | ACCTGC | 2 cut(s) | 4175, 4616 |
| BspPI | GGATC | 9 cut(s) | 877, 1295, 2023, 2662, 2710, 2725, 3100, 4327, 4444 |
| BspQI | GCTCTTC | 1 cut(s) | 1493 |
| BspT104I | TTCGAA | 3 cut(s) | 1000, 1652, 2807 |
| BspTNI | GGTCTC | 2 cut(s) | 1561, 4472 |
| BsrDI | GCAATG | 4 cut(s) | 381, 1645, 3543, 3586 |
| BsrGI | TGTACA | 1 cut(s) | 237 |
| BsrI | ACTGG | 4 cut(s) | 334, 2704, 3200, 4342 |
| BssECI | CCNNGG | 8 cut(s) | 1476, 1789, 2373, 2500, 2691, 3561, 3711, 3873 |
| BssT1I | CCWWGG | 8 cut(s) | 1476, 1789, 2373, 2500, 2691, 3561, 3711, 3873 |
| Bst2UI | CCWGG | 2 cut(s) | 1350, 4224 |
| Bst4CI | ACNGT | 9 cut(s) | 608, 1174, 1445, 1521, 1590, 2385, 3280, 3323, 3862 |
| Bst6I | CTCTTC | 2 cut(s) | 1017, 1493 |
| BstAUI | TGTACA | 1 cut(s) | 237 |
| BstBI | TTCGAA | 3 cut(s) | 1000, 1652, 2807 |
| BstC8I | GCNNGC | 5 cut(s) | 551, 930, 2624, 2854, 3968 |
| BstDSI | CCRYGG | 2 cut(s) | 1789, 2373 |
| BstEII | GGTNACC | 1 cut(s) | 1335 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 866, 1742, 2951, 4576 |
| BstNI | CCWGG | 2 cut(s) | 1350, 4224 |
| BstNSI | RCATGY | 2 cut(s) | 177, 2209 |
| BstPI | GGTNACC | 1 cut(s) | 1335 |
| BstSCI | CCNGG | 2 cut(s) | 1348, 4222 |
| BstSFI | CTRYAG | 4 cut(s) | 483, 1692, 3228, 3276 |
| BstV1I | GCAGC | 6 cut(s) | 204, 1706, 2775, 3272, 3633, 3957 |
| BstX2I | RGATCY | 3 cut(s) | 2702, 2717, 4319 |
| BstYI | RGATCY | 3 cut(s) | 2702, 2717, 4319 |
| Bsu15I | ATCGAT | 3 cut(s) | 730, 1364, 4142 |
| BsuRI | GGCC | 2 cut(s) | 333, 1788 |
| BsuTUI | ATCGAT | 3 cut(s) | 730, 1364, 4142 |
| BtgI | CCRYGG | 2 cut(s) | 1789, 2373 |
| BtgZI | GCGATG | 1 cut(s) | 1065 |
| BtsI | GCAGTG | 4 cut(s) | 480, 2961, 3339, 4467 |
| BtsIMutI | CAGTG | 7 cut(s) | 480, 1726, 2961, 3207, 3285, 3339, 4467 |
| BveI | ACCTGC | 2 cut(s) | 4175, 4616 |
| Cac8I | GCNNGC | 5 cut(s) | 551, 930, 2624, 2854, 3968 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2906, 3902 |
| CciI | TCATGA | 2 cut(s) | 1669, 4564 |
| Cfr13I | GGNCC | 4 cut(s) | 315, 1517, 2176, 2497 |
| ClaI | ATCGAT | 3 cut(s) | 730, 1364, 4142 |
| CseI | GACGC | 1 cut(s) | 1944 |
| CsiI | ACCWGGT | 1 cut(s) | 4222 |
| Csp6I | GTAC | 6 cut(s) | 76, 238, 1580, 1917, 3222, 4077 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 3169, 3204, 3261, 3296, 4443, 4478 |
| CviQI | GTAC | 6 cut(s) | 76, 238, 1580, 1917, 3222, 4077 |
| DraI | TTTAAA | 2 cut(s) | 3084, 3246 |
| DraIII | CACNNNGTG | 1 cut(s) | 1070 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2249 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2249 |
| EaeI | YGGCCR | 2 cut(s) | 331, 1786 |
| Eam1104I | CTCTTC | 2 cut(s) | 1017, 1493 |
| EarI | CTCTTC | 2 cut(s) | 1017, 1493 |
| Eco130I | CCWWGG | 8 cut(s) | 1476, 1789, 2373, 2500, 2691, 3561, 3711, 3873 |
| Eco24I | GRGCYC | 1 cut(s) | 4469 |
| Eco31I | GGTCTC | 2 cut(s) | 1561, 4472 |
| Eco32I | GATATC | 2 cut(s) | 2220, 2232 |
| Eco47I | GGWCC | 4 cut(s) | 315, 1517, 2176, 2497 |
| Eco57I | CTGAAG | 6 cut(s) | 801, 1189, 1492, 2184, 2628, 2928 |
| Eco88I | CYCGRG | 2 cut(s) | 399, 2081 |
| Eco91I | GGTNACC | 1 cut(s) | 1335 |
| EcoO109I | RGGNCCY | 3 cut(s) | 315, 2176, 2497 |
| EcoO65I | GGTNACC | 1 cut(s) | 1335 |
| EcoRII | CCWGG | 2 cut(s) | 1348, 4222 |
| EcoRV | GATATC | 2 cut(s) | 2220, 2232 |
| EcoT14I | CCWWGG | 8 cut(s) | 1476, 1789, 2373, 2500, 2691, 3561, 3711, 3873 |
| EcoT22I | ATGCAT | 6 cut(s) | 280, 862, 2818, 3031, 3304, 3700 |
| EcoT38I | GRGCYC | 1 cut(s) | 4469 |
| ErhI | CCWWGG | 8 cut(s) | 1476, 1789, 2373, 2500, 2691, 3561, 3711, 3873 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1786, 1818, 2163, 2195 |
| FaqI | GGGAC | 3 cut(s) | 61, 328, 3458 |
| FauI | CCCGC | 1 cut(s) | 457 |
| FbaI | TGATCA | 3 cut(s) | 757, 1426, 3433 |
| FblI | GTMKAC | 3 cut(s) | 625, 2097, 3869 |
| Fnu4HI | GCNGC | 6 cut(s) | 218, 1695, 2789, 3261, 3647, 3971 |
| FriOI | GRGCYC | 1 cut(s) | 4469 |
| Fsp4HI | GCNGC | 6 cut(s) | 218, 1695, 2789, 3261, 3647, 3971 |
| GluI | GCNGC | 6 cut(s) | 218, 1695, 2789, 3261, 3647, 3971 |
| GsuI | CTGGAG | 3 cut(s) | 1581, 2145, 4496 |
| HaeIII | GGCC | 2 cut(s) | 333, 1788 |
| HgaI | GACGC | 1 cut(s) | 1944 |
| HincII | GTYRAC | 2 cut(s) | 139, 626 |
| HindII | GTYRAC | 2 cut(s) | 139, 626 |
| HindIII | AAGCTT | 6 cut(s) | 1201, 1504, 1770, 1906, 1960, 2283 |
| HpaI | GTTAAC | 1 cut(s) | 139 |
| HphI | GGTGA | 9 cut(s) | 767, 794, 843, 2051, 2498, 3169, 3653, 3815, 4298 |
| Hpy166II | GTNNAC | 5 cut(s) | 139, 626, 2098, 3870, 4102 |
| Hpy8I | GTNNAC | 5 cut(s) | 139, 626, 2098, 3870, 4102 |
| HpyCH4III | ACNGT | 9 cut(s) | 608, 1174, 1445, 1521, 1590, 2385, 3280, 3323, 3862 |
| HpyCH4IV | ACGT | 1 cut(s) | 4398 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 866, 1742, 2951, 4576 |
| HpySE526I | ACGT | 1 cut(s) | 4398 |
| KflI | GGGWCCC | 1 cut(s) | 315 |
| Ksp22I | TGATCA | 3 cut(s) | 757, 1426, 3433 |
| KspAI | GTTAAC | 1 cut(s) | 139 |
| LguI | GCTCTTC | 1 cut(s) | 1493 |
| LmnI | GCTCC | 7 cut(s) | 20, 925, 1144, 1363, 1600, 2137, 3851 |
| Lsp1109I | GCAGC | 6 cut(s) | 204, 1706, 2775, 3272, 3633, 3957 |
| MabI | ACCWGGT | 1 cut(s) | 4222 |
| MaeII | ACGT | 1 cut(s) | 4398 |
| MaeIII | GTNAC | 7 cut(s) | 176, 1264, 1335, 1974, 2524, 2875, 3072 |
| MflI | RGATCY | 3 cut(s) | 2702, 2717, 4319 |
| MhlI | GDGCHC | 4 cut(s) | 1488, 2400, 2728, 4469 |
| MlsI | TGGCCA | 2 cut(s) | 333, 1788 |
| MluNI | TGGCCA | 2 cut(s) | 333, 1788 |
| MlyI | GAGTC | 6 cut(s) | 950, 992, 1415, 2144, 2183, 2237 |
| MmeI | TCCRAC | 5 cut(s) | 363, 1782, 3469, 3829, 4414 |
| Mox20I | TGGCCA | 2 cut(s) | 333, 1788 |
| Mph1103I | ATGCAT | 6 cut(s) | 280, 862, 2818, 3031, 3304, 3700 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1202, 4106 |
| MscI | TGGCCA | 2 cut(s) | 333, 1788 |
| MslI | CAYNNNNRTG | 1 cut(s) | 753 |
| Msp20I | TGGCCA | 2 cut(s) | 333, 1788 |
| MspA1I | CMGCKG | 1 cut(s) | 452 |
| MspR9I | CCNGG | 2 cut(s) | 1350, 4224 |
| Mva1269I | GAATGC | 1 cut(s) | 219 |
| MvaI | CCWGG | 2 cut(s) | 1350, 4224 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 866, 1742, 2951, 4576 |
| NcoI | CCATGG | 2 cut(s) | 1789, 2373 |
| NlaIV | GGNNCC | 6 cut(s) | 316, 317, 1157, 1902, 2139, 2177 |
| NmeAIII | GCCGAG | 1 cut(s) | 1243 |
| NmuCI | GTSAC | 3 cut(s) | 1974, 2524, 3072 |
| NsiI | ATGCAT | 6 cut(s) | 280, 862, 2818, 3031, 3304, 3700 |
| NspI | RCATGY | 2 cut(s) | 177, 2209 |
| NspV | TTCGAA | 3 cut(s) | 1000, 1652, 2807 |
| OliI | CACNNNNGTG | 1 cut(s) | 753 |
| PaeR7I | CTCGAG | 1 cut(s) | 2081 |
| PagI | TCATGA | 2 cut(s) | 1669, 4564 |
| PciI | ACATGT | 1 cut(s) | 173 |
| PciSI | GCTCTTC | 1 cut(s) | 1493 |
| PctI | GAATGC | 1 cut(s) | 219 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1202, 4106 |
| PflFI | GACNNNGTC | 1 cut(s) | 3070 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 206, 1349, 3158, 4698 |
| PkrI | GCNGC | 6 cut(s) | 219, 1696, 2790, 3262, 3648, 3972 |
| PleI | GAGTC | 6 cut(s) | 949, 991, 1414, 2144, 2183, 2237 |
| PpsI | GAGTC | 6 cut(s) | 949, 991, 1414, 2144, 2183, 2237 |
| PpuMI | RGGWCCY | 3 cut(s) | 315, 2176, 2497 |
| PscI | ACATGT | 1 cut(s) | 173 |
| PshBI | ATTAAT | 3 cut(s) | 684, 1095, 3381 |
| Psp1406I | AACGTT | 1 cut(s) | 4398 |
| Psp5II | RGGWCCY | 3 cut(s) | 315, 2176, 2497 |
| Psp6I | CCWGG | 2 cut(s) | 1348, 4222 |
| PspEI | GGTNACC | 1 cut(s) | 1335 |
| PspGI | CCWGG | 2 cut(s) | 1348, 4222 |
| PspN4I | GGNNCC | 6 cut(s) | 316, 317, 1157, 1902, 2139, 2177 |
| PspPI | GGNCC | 4 cut(s) | 315, 1517, 2176, 2497 |
| PspPPI | RGGWCCY | 3 cut(s) | 315, 2176, 2497 |
| PspXI | VCTCGAGB | 1 cut(s) | 2081 |
| PstI | CTGCAG | 2 cut(s) | 487, 1696 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2906, 3902 |
| PsuI | RGATCY | 3 cut(s) | 2702, 2717, 4319 |
| PsyI | GACNNNGTC | 1 cut(s) | 3070 |
| RsaI | GTAC | 6 cut(s) | 77, 239, 1581, 1918, 3223, 4078 |
| RsaNI | GTAC | 6 cut(s) | 76, 238, 1580, 1917, 3222, 4077 |
| RseI | CAYNNNNRTG | 1 cut(s) | 753 |
| SalI | GTCGAC | 1 cut(s) | 624 |
| SapI | GCTCTTC | 1 cut(s) | 1493 |
| SatI | GCNGC | 6 cut(s) | 218, 1695, 2789, 3261, 3647, 3971 |
| Sau96I | GGNCC | 4 cut(s) | 315, 1517, 2176, 2497 |
| SchI | GAGTC | 6 cut(s) | 950, 992, 1415, 2144, 2183, 2237 |
| ScrFI | CCNGG | 2 cut(s) | 1350, 4224 |
| SduI | GDGCHC | 4 cut(s) | 1488, 2400, 2728, 4469 |
| SexAI | ACCWGGT | 1 cut(s) | 4222 |
| SfcI | CTRYAG | 4 cut(s) | 483, 1692, 3228, 3276 |
| Sfr274I | CTCGAG | 1 cut(s) | 2081 |
| SfuI | TTCGAA | 3 cut(s) | 1000, 1652, 2807 |
| SinI | GGWCC | 4 cut(s) | 315, 1517, 2176, 2497 |
| SlaI | CTCGAG | 1 cut(s) | 2081 |
| SmiI | ATTTAAAT | 1 cut(s) | 3246 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 753 |
| SmlI | CTYRAG | 3 cut(s) | 2081, 2152, 2727 |
| SmoI | CTYRAG | 3 cut(s) | 2081, 2152, 2727 |
| SsiI | CCGC | 3 cut(s) | 18, 450, 3749 |
| SspI | AATATT | 1 cut(s) | 3187 |
| StyD4I | CCNGG | 2 cut(s) | 1348, 4222 |
| StyI | CCWWGG | 8 cut(s) | 1476, 1789, 2373, 2500, 2691, 3561, 3711, 3873 |
| SwaI | ATTTAAAT | 1 cut(s) | 3246 |
| TaaI | ACNGT | 9 cut(s) | 608, 1174, 1445, 1521, 1590, 2385, 3280, 3323, 3862 |
| TaiI | ACGT | 1 cut(s) | 4401 |
| TaqII | GACCGA | 1 cut(s) | 4496 |
| TatI | WGTACW | 2 cut(s) | 237, 1916 |
| TscAI | CASTG | 7 cut(s) | 487, 1726, 2961, 3207, 3285, 3346, 4467 |
| TseFI | GTSAC | 3 cut(s) | 1974, 2524, 3072 |
| TseI | GCWGC | 6 cut(s) | 217, 1694, 2788, 3260, 3646, 3970 |
| Tsp45I | GTSAC | 3 cut(s) | 1974, 2524, 3072 |
| TspGWI | ACGGA | 1 cut(s) | 1481 |
| TspRI | CASTG | 7 cut(s) | 487, 1726, 2961, 3207, 3285, 3346, 4467 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3070 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 206, 1349, 3158, 4698 |
| VpaK11BI | GGWCC | 4 cut(s) | 315, 1517, 2176, 2497 |
| VspI | ATTAAT | 3 cut(s) | 684, 1095, 3381 |
| XbaI | TCTAGA | 2 cut(s) | 2705, 4672 |
| XceI | RCATGY | 2 cut(s) | 177, 2209 |
| XhoI | CTCGAG | 1 cut(s) | 2081 |
| XmiI | GTMKAC | 3 cut(s) | 625, 2097, 3869 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1202, 4106 |
| Zsp2I | ATGCAT | 6 cut(s) | 280, 862, 2818, 3031, 3304, 3700 |