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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G17910 AT5G17910 AT5G17910 |
| fragaria_vesca | FvH4_1g29420 FvH4_1g29420 FvH4_1g29420 FvH4_2g10091 FvH4_2g10092 |
| malus_domestica | MD05G1057800.v1.1 MD12G1015000.v1.1 MD14G1012900.v1.1 |
| prunus_persica | Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1 |
| pyrus_communis | pycom05g04890 pycom12g01220 pycom14g01090 |
| rosa_chinensis | RchiOBHm_Chr3g0495491 RchiOBHm_Chr6g0267051 |
| rosa_laevigata | RLG00000014046 RLG00000022616 |
| rosa_multiflora | Rmu_co8285861.1_g000001 Rmu_sc0004755.1_g000026 Rmu_sc0005599.1_g000001 Rmu_sc0006163.1_g000016 Rmu_sc0013804.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00390490 Rroxscaffold_7G00201200 |
| rosa_rugosa | Rorug03G0273800 Rorug06G0028700 |
| rosa_samantha | Rh3AG321400 Rh3BG356700 Rh3CG353500 Rh3DG356000 Rh6AG150200 Rh6BG151100 Rh6CG146500 Rh6DG135200 |
| rosa_wichuraiana | Rw3G028090 Rw6G013020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 751 |
| AccB1I | GGYRCC | 1 cut(s) | 2150 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3188 |
| AccI | GTMKAC | 1 cut(s) | 3032 |
| AccII | CGCG | 2 cut(s) | 1542, 2997 |
| AccIII | TCCGGA | 1 cut(s) | 1505 |
| AciI | CCGC | 4 cut(s) | 299, 305, 609, 5219 |
| AclI | AACGTT | 1 cut(s) | 4317 |
| AcoI | YGGCCR | 1 cut(s) | 220 |
| AdeI | CACNNNGTG | 1 cut(s) | 605 |
| AfaI | GTAC | 9 cut(s) | 1395, 1726, 2128, 2166, 2548, 3250, 3939, 4924, 4947 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 178, 540, 997, 1172, 2473, 2474, 3188, 4796, 5045 |
| AflIII | ACRYGT | 2 cut(s) | 62, 2161 |
| AhlI | ACTAGT | 3 cut(s) | 2795, 3908, 4940 |
| AjnI | CCWGG | 7 cut(s) | 1171, 1198, 1352, 1645, 1692, 2194, 4027 |
| AleI | CACNNNNGTG | 1 cut(s) | 3389 |
| AloI | GAACNNNNNNTCC | 8 cut(s) | 3084, 3116, 3246, 3278, 3351, 3383, 3633, 3665 |
| Alw21I | GWGCWC | 2 cut(s) | 1254, 4464 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 638, 1976, 2843, 3257, 5099 |
| Ama87I | CYCGRG | 1 cut(s) | 288 |
| Aor13HI | TCCGGA | 1 cut(s) | 1505 |
| AoxI | GGCC | 3 cut(s) | 220, 1643, 1690 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2600, 2632, 3014, 3046 |
| AseI | ATTAAT | 2 cut(s) | 3084, 3753 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1606 |
| AspLEI | GCGC | 1 cut(s) | 1542 |
| AspS9I | GGNCC | 3 cut(s) | 204, 1690, 1984 |
| AsuC2I | CCSGG | 3 cut(s) | 289, 290, 833 |
| AsuII | TTCGAA | 1 cut(s) | 2312 |
| AvaI | CYCGRG | 1 cut(s) | 288 |
| AvaII | GGWCC | 2 cut(s) | 204, 1984 |
| AxyI | CCTNAGG | 1 cut(s) | 3132 |
| BaeGI | GKGCMC | 1 cut(s) | 3062 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 379, 412, 4062, 4095, 4437, 4470 |
| BanI | GGYRCC | 1 cut(s) | 2150 |
| BanII | GRGCYC | 2 cut(s) | 1254, 4464 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5107, 5139 |
| BauI | CACGAG | 2 cut(s) | 95, 3487 |
| BbsI | GAAGAC | 2 cut(s) | 588, 3485 |
| Bbv12I | GWGCWC | 2 cut(s) | 1254, 4464 |
| BceAI | ACGGC | 1 cut(s) | 1658 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 642, 676, 1903, 1937, 4768, 4802 |
| BciT130I | CCWGG | 7 cut(s) | 1173, 1200, 1354, 1647, 1694, 2196, 4029 |
| BciVI | GTATCC | 1 cut(s) | 814 |
| BclI | TGATCA | 3 cut(s) | 583, 2374, 3121 |
| BcnI | CCSGG | 3 cut(s) | 289, 290, 833 |
| BcuI | ACTAGT | 3 cut(s) | 2795, 3908, 4940 |
| BfaI | CTAG | 9 cut(s) | 1338, 1458, 1622, 2292, 2796, 3449, 3909, 4074, 4941 |
| BfmI | CTRYAG | 4 cut(s) | 125, 2637, 3195, 3636 |
| BfuAI | ACCTGC | 1 cut(s) | 751 |
| BfuI | GTATCC | 1 cut(s) | 814 |
| BglII | AGATCT | 3 cut(s) | 1513, 1618, 3797 |
| BmcAI | AGTACT | 1 cut(s) | 2548 |
| Bme18I | GGWCC | 2 cut(s) | 204, 1984 |
| BmeT110I | CYCGRG | 1 cut(s) | 288 |
| BmgT120I | GGNCC | 3 cut(s) | 204, 1690, 1984 |
| BmiI | GGNNCC | 9 cut(s) | 205, 206, 989, 1752, 1947, 2152, 2956, 3046, 5065 |
| BmrI | ACTGGG | 1 cut(s) | 4685 |
| BmuI | ACTGGG | 1 cut(s) | 4685 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1289, 2292 |
| BpiI | GAAGAC | 2 cut(s) | 588, 3485 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2555, 2587 |
| BpmI | CTGGAG | 1 cut(s) | 509 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1248 |
| Bpu14I | TTCGAA | 1 cut(s) | 2312 |
| BpuEI | CTTGAG | 2 cut(s) | 1238, 2476 |
| BpuMI | CCSGG | 3 cut(s) | 289, 290, 833 |
| BsaAI | YACGTR | 2 cut(s) | 2168, 2399 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1623, 1932 |
| BsaI | GGTCTC | 2 cut(s) | 1375, 3696 |
| BsaJI | CCNNGG | 9 cut(s) | 288, 832, 1646, 2195, 2814, 3066, 3228, 3615, 5070 |
| BsaWI | WCCGGW | 1 cut(s) | 1505 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1251, 1281, 1722, 1752, 3658, 3688, 4318, 4348 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 178, 540, 997, 1172, 2473, 2474, 3188, 4796, 5045 |
| Bse118I | RCCGGY | 2 cut(s) | 565, 2208 |
| Bse1I | ACTGG | 8 cut(s) | 1949, 2848, 3361, 3649, 3951, 4146, 4417, 4680 |
| Bse21I | CCTNAGG | 1 cut(s) | 3132 |
| Bse3DI | GCAATG | 4 cut(s) | 2677, 3060, 3234, 3339 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1623, 1932 |
| BseAI | TCCGGA | 1 cut(s) | 1505 |
| BseBI | CCWGG | 7 cut(s) | 1173, 1200, 1354, 1647, 1694, 2196, 4029 |
| BseDI | CCNNGG | 9 cut(s) | 288, 832, 1646, 2195, 2814, 3066, 3228, 3615, 5070 |
| BseJI | GATNNNNATC | 2 cut(s) | 1623, 1932 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 178, 540, 997, 1172, 2473, 2474, 3188, 4796, 5045 |
| BseMI | GCAATG | 4 cut(s) | 2677, 3060, 3234, 3339 |
| BseNI | ACTGG | 8 cut(s) | 1949, 2848, 3361, 3649, 3951, 4146, 4417, 4680 |
| BseRI | GAGGAG | 3 cut(s) | 855, 2348, 3273 |
| BseSI | GKGCMC | 1 cut(s) | 3062 |
| BseYI | CCCAGC | 1 cut(s) | 1969 |
| BsgI | GTGCAG | 2 cut(s) | 4437, 5004 |
| Bsh1236I | CGCG | 2 cut(s) | 1542, 2997 |
| BshFI | GGCC | 3 cut(s) | 222, 1645, 1692 |
| BshNI | GGYRCC | 1 cut(s) | 2150 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1254, 4464 |
| BsiHKCI | CYCGRG | 1 cut(s) | 288 |
| BsiSI | CCGG | 6 cut(s) | 289, 566, 832, 1506, 1676, 2209 |
| BslFI | GGGAC | 5 cut(s) | 217, 739, 974, 1277, 2444 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 178, 540, 997, 1172, 2473, 2474, 3188, 4796, 5045 |
| BsmFI | GGGAC | 5 cut(s) | 217, 739, 974, 1277, 2444 |
| BsmI | GAATGC | 4 cut(s) | 1606, 1714, 1926, 2207 |
| BsnI | GGCC | 3 cut(s) | 222, 1645, 1692 |
| Bso31I | GGTCTC | 2 cut(s) | 1375, 3696 |
| BsoBI | CYCGRG | 1 cut(s) | 288 |
| Bsp119I | TTCGAA | 1 cut(s) | 2312 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1254, 3062, 4464 |
| Bsp13I | TCCGGA | 1 cut(s) | 1505 |
| Bsp1407I | TGTACA | 2 cut(s) | 3937, 4945 |
| Bsp68I | TCGCGA | 1 cut(s) | 2997 |
| BspACI | CCGC | 4 cut(s) | 299, 305, 609, 5219 |
| BspANI | GGCC | 3 cut(s) | 222, 1645, 1692 |
| BspEI | TCCGGA | 1 cut(s) | 1505 |
| BspFNI | CGCG | 2 cut(s) | 1542, 2997 |
| BspHI | TCATGA | 1 cut(s) | 2371 |
| BspLI | GGNNCC | 9 cut(s) | 205, 206, 989, 1752, 1947, 2152, 2956, 3046, 5065 |
| BspMAI | CTGCAG | 2 cut(s) | 129, 2641 |
| BspMI | ACCTGC | 1 cut(s) | 751 |
| BspQI | GCTCTTC | 1 cut(s) | 2219 |
| BspT104I | TTCGAA | 1 cut(s) | 2312 |
| BspT107I | GGYRCC | 1 cut(s) | 2150 |
| BspTNI | GGTCTC | 2 cut(s) | 1375, 3696 |
| BsrDI | GCAATG | 4 cut(s) | 2677, 3060, 3234, 3339 |
| BsrFI | RCCGGY | 2 cut(s) | 565, 2208 |
| BsrGI | TGTACA | 2 cut(s) | 3937, 4945 |
| BsrI | ACTGG | 8 cut(s) | 1949, 2848, 3361, 3649, 3951, 4146, 4417, 4680 |
| BssAI | RCCGGY | 2 cut(s) | 565, 2208 |
| BssECI | CCNNGG | 9 cut(s) | 288, 832, 1646, 2195, 2814, 3066, 3228, 3615, 5070 |
| BssSI | CACGAG | 2 cut(s) | 95, 3487 |
| BssT1I | CCWWGG | 5 cut(s) | 2814, 3066, 3228, 3615, 5070 |
| Bst2BI | CACGAG | 2 cut(s) | 95, 3487 |
| Bst2UI | CCWGG | 7 cut(s) | 1173, 1200, 1354, 1647, 1694, 2196, 4029 |
| Bst6I | CTCTTC | 5 cut(s) | 458, 843, 2182, 2219, 3519 |
| BstAUI | TGTACA | 2 cut(s) | 3937, 4945 |
| BstBAI | YACGTR | 2 cut(s) | 2168, 2399 |
| BstBI | TTCGAA | 1 cut(s) | 2312 |
| BstC8I | GCNNGC | 9 cut(s) | 224, 567, 1316, 1320, 1324, 1714, 2328, 4161, 4536 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4794 |
| BstFNI | CGCG | 2 cut(s) | 1542, 2997 |
| BstHHI | GCGC | 1 cut(s) | 1542 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 305, 680, 1363, 1672, 2593, 3458, 4586 |
| BstNI | CCWGG | 7 cut(s) | 1173, 1200, 1354, 1647, 1694, 2196, 4029 |
| BstNSI | RCATGY | 3 cut(s) | 66, 1322, 2165 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1289, 2292 |
| BstSFI | CTRYAG | 4 cut(s) | 125, 2637, 3195, 3636 |
| BstSLI | GKGCMC | 1 cut(s) | 3062 |
| BstUI | CGCG | 2 cut(s) | 1542, 2997 |
| BstV2I | GAAGAC | 2 cut(s) | 588, 3485 |
| BstX2I | RGATCY | 7 cut(s) | 1513, 1618, 2191, 3191, 3254, 3359, 3797 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3055 |
| BstYI | RGATCY | 7 cut(s) | 1513, 1618, 2191, 3191, 3254, 3359, 3797 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3132 |
| BsuI | GTATCC | 1 cut(s) | 814 |
| BsuRI | GGCC | 3 cut(s) | 222, 1645, 1692 |
| BtgZI | GCGATG | 1 cut(s) | 891 |
| BtsI | GCAGTG | 9 cut(s) | 2646, 3609, 3765, 3924, 4050, 4305, 4425, 4575, 4959 |
| BtuMI | TCGCGA | 1 cut(s) | 2997 |
| BveI | ACCTGC | 1 cut(s) | 751 |
| Cac8I | GCNNGC | 9 cut(s) | 224, 567, 1316, 1320, 1324, 1714, 2328, 4161, 4536 |
| CaiI | CAGNNNCTG | 5 cut(s) | 638, 1976, 2843, 3257, 5099 |
| CciI | TCATGA | 1 cut(s) | 2371 |
| CfoI | GCGC | 1 cut(s) | 1542 |
| Cfr10I | RCCGGY | 2 cut(s) | 565, 2208 |
| Cfr13I | GGNCC | 3 cut(s) | 204, 1690, 1984 |
| Cfr9I | CCCGGG | 1 cut(s) | 288 |
| Csp6I | GTAC | 9 cut(s) | 1394, 1725, 2127, 2165, 2547, 3249, 3938, 4923, 4946 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 528, 563 |
| CviQI | GTAC | 9 cut(s) | 1394, 1725, 2127, 2165, 2547, 3249, 3938, 4923, 4946 |
| DraI | TTTAAA | 4 cut(s) | 2241, 4266, 4641, 5025 |
| DraIII | CACNNNGTG | 1 cut(s) | 605 |
| EaeI | YGGCCR | 1 cut(s) | 220 |
| Eam1104I | CTCTTC | 5 cut(s) | 458, 843, 2182, 2219, 3519 |
| EarI | CTCTTC | 5 cut(s) | 458, 843, 2182, 2219, 3519 |
| Ecl136II | GAGCTC | 2 cut(s) | 1252, 4462 |
| Eco130I | CCWWGG | 5 cut(s) | 2814, 3066, 3228, 3615, 5070 |
| Eco24I | GRGCYC | 2 cut(s) | 1254, 4464 |
| Eco31I | GGTCTC | 2 cut(s) | 1375, 3696 |
| Eco47I | GGWCC | 2 cut(s) | 204, 1984 |
| Eco53kI | GAGCTC | 2 cut(s) | 1252, 4462 |
| Eco81I | CCTNAGG | 1 cut(s) | 3132 |
| Eco88I | CYCGRG | 1 cut(s) | 288 |
| EcoICRI | GAGCTC | 2 cut(s) | 1252, 4462 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4794 |
| EcoO109I | RGGNCCY | 2 cut(s) | 204, 1984 |
| EcoRI | GAATTC | 3 cut(s) | 3877, 4048, 5161 |
| EcoRII | CCWGG | 7 cut(s) | 1171, 1198, 1352, 1645, 1692, 2194, 4027 |
| EcoT14I | CCWWGG | 5 cut(s) | 2814, 3066, 3228, 3615, 5070 |
| EcoT38I | GRGCYC | 2 cut(s) | 1254, 4464 |
| ErhI | CCWWGG | 5 cut(s) | 2814, 3066, 3228, 3615, 5070 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1594, 1626 |
| FaqI | GGGAC | 5 cut(s) | 217, 739, 974, 1277, 2444 |
| FauI | CCCGC | 1 cut(s) | 5212 |
| FauNDI | CATATG | 1 cut(s) | 750 |
| FbaI | TGATCA | 3 cut(s) | 583, 2374, 3121 |
| FblI | GTMKAC | 1 cut(s) | 3032 |
| FriOI | GRGCYC | 2 cut(s) | 1254, 4464 |
| FspBI | CTAG | 9 cut(s) | 1338, 1458, 1622, 2292, 2796, 3449, 3909, 4074, 4941 |
| GlaI | GCGC | 1 cut(s) | 1541 |
| GsaI | CCCAGC | 1 cut(s) | 1973 |
| GsuI | CTGGAG | 1 cut(s) | 509 |
| HaeIII | GGCC | 3 cut(s) | 222, 1645, 1692 |
| HapII | CCGG | 6 cut(s) | 289, 566, 832, 1506, 1676, 2209 |
| HhaI | GCGC | 1 cut(s) | 1542 |
| Hin6I | GCGC | 1 cut(s) | 1540 |
| HinP1I | GCGC | 1 cut(s) | 1540 |
| HincII | GTYRAC | 3 cut(s) | 1594, 2943, 3033 |
| HindII | GTYRAC | 3 cut(s) | 1594, 2943, 3033 |
| HindIII | AAGCTT | 5 cut(s) | 1578, 1714, 1816, 4157, 4532 |
| HpaII | CCGG | 6 cut(s) | 289, 566, 832, 1506, 1676, 2209 |
| Hpy166II | GTNNAC | 6 cut(s) | 933, 1594, 2943, 3008, 3033, 4946 |
| Hpy8I | GTNNAC | 6 cut(s) | 933, 1594, 2943, 3008, 3033, 4946 |
| Hpy99I | CGWCG | 2 cut(s) | 3877, 4457 |
| HpyCH4IV | ACGT | 6 cut(s) | 2167, 2398, 3201, 3872, 4317, 4452 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 305, 680, 1363, 1672, 2593, 3458, 4586 |
| HpySE526I | ACGT | 6 cut(s) | 2167, 2398, 3201, 3872, 4317, 4452 |
| HspAI | GCGC | 1 cut(s) | 1540 |
| KflI | GGGWCCC | 1 cut(s) | 204 |
| Kpn2I | TCCGGA | 1 cut(s) | 1505 |
| KroI | GCCGGC | 1 cut(s) | 565 |
| KroNI | GCCGGC | 1 cut(s) | 567 |
| Ksp22I | TGATCA | 3 cut(s) | 583, 2374, 3121 |
| LguI | GCTCTTC | 1 cut(s) | 2219 |
| LmnI | GCTCC | 8 cut(s) | 484, 739, 976, 1186, 1945, 2563, 3133, 4467 |
| MaeI | CTAG | 9 cut(s) | 1338, 1458, 1622, 2292, 2796, 3449, 3909, 4074, 4941 |
| MaeII | ACGT | 6 cut(s) | 2167, 2398, 3201, 3872, 4317, 4452 |
| MfeI | CAATTG | 1 cut(s) | 411 |
| MflI | RGATCY | 7 cut(s) | 1513, 1618, 2191, 3191, 3254, 3359, 3797 |
| MhlI | GDGCHC | 3 cut(s) | 1254, 3062, 4464 |
| MlyI | GAGTC | 9 cut(s) | 510, 602, 815, 1502, 2282, 2423, 2466, 3499, 5276 |
| MmeI | TCCRAC | 3 cut(s) | 2434, 3184, 3679 |
| MroI | TCCGGA | 1 cut(s) | 1505 |
| MroNI | GCCGGC | 1 cut(s) | 565 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1606 |
| MslI | CAYNNNNRTG | 5 cut(s) | 2166, 3389, 4266, 4641, 5178 |
| MspA1I | CMGCKG | 1 cut(s) | 299 |
| MspI | CCGG | 6 cut(s) | 289, 566, 832, 1506, 1676, 2209 |
| MunI | CAATTG | 1 cut(s) | 411 |
| Mva1269I | GAATGC | 4 cut(s) | 1606, 1714, 1926, 2207 |
| MvaI | CCWGG | 7 cut(s) | 1173, 1200, 1354, 1647, 1694, 2196, 4029 |
| MvnI | CGCG | 2 cut(s) | 1542, 2997 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 305, 680, 1363, 1672, 2593, 3458, 4586 |
| NaeI | GCCGGC | 1 cut(s) | 567 |
| NciI | CCSGG | 3 cut(s) | 289, 290, 833 |
| NdeI | CATATG | 1 cut(s) | 750 |
| NgoMIV | GCCGGC | 1 cut(s) | 565 |
| NlaIV | GGNNCC | 9 cut(s) | 205, 206, 989, 1752, 1947, 2152, 2956, 3046, 5065 |
| NmeAIII | GCCGAG | 1 cut(s) | 478 |
| NmuCI | GTSAC | 4 cut(s) | 43, 160, 663, 2698 |
| NruI | TCGCGA | 1 cut(s) | 2997 |
| NspI | RCATGY | 3 cut(s) | 66, 1322, 2165 |
| NspV | TTCGAA | 1 cut(s) | 2312 |
| OliI | CACNNNNGTG | 1 cut(s) | 3389 |
| PaeI | GCATGC | 1 cut(s) | 1322 |
| PagI | TCATGA | 1 cut(s) | 2371 |
| PciI | ACATGT | 2 cut(s) | 62, 2161 |
| PciSI | GCTCTTC | 1 cut(s) | 2219 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3001 |
| PctI | GAATGC | 4 cut(s) | 1606, 1714, 1926, 2207 |
| PdiI | GCCGGC | 1 cut(s) | 567 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1606 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3188 |
| PleI | GAGTC | 9 cut(s) | 509, 601, 814, 1501, 2282, 2422, 2465, 3498, 5275 |
| PpsI | GAGTC | 9 cut(s) | 509, 601, 814, 1501, 2282, 2422, 2465, 3498, 5275 |
| Ppu21I | YACGTR | 2 cut(s) | 2168, 2399 |
| PpuMI | RGGWCCY | 2 cut(s) | 204, 1984 |
| PscI | ACATGT | 2 cut(s) | 62, 2161 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1289, 2292 |
| PshBI | ATTAAT | 2 cut(s) | 3084, 3753 |
| Psp124BI | GAGCTC | 2 cut(s) | 1254, 4464 |
| Psp1406I | AACGTT | 1 cut(s) | 4317 |
| Psp5II | RGGWCCY | 2 cut(s) | 204, 1984 |
| Psp6I | CCWGG | 7 cut(s) | 1171, 1198, 1352, 1645, 1692, 2194, 4027 |
| PspFI | CCCAGC | 1 cut(s) | 1969 |
| PspGI | CCWGG | 7 cut(s) | 1171, 1198, 1352, 1645, 1692, 2194, 4027 |
| PspN4I | GGNNCC | 9 cut(s) | 205, 206, 989, 1752, 1947, 2152, 2956, 3046, 5065 |
| PspPI | GGNCC | 3 cut(s) | 204, 1690, 1984 |
| PspPPI | RGGWCCY | 2 cut(s) | 204, 1984 |
| PstI | CTGCAG | 2 cut(s) | 129, 2641 |
| PstNI | CAGNNNCTG | 5 cut(s) | 638, 1976, 2843, 3257, 5099 |
| PsuI | RGATCY | 7 cut(s) | 1513, 1618, 2191, 3191, 3254, 3359, 3797 |
| RruI | TCGCGA | 1 cut(s) | 2997 |
| RsaI | GTAC | 9 cut(s) | 1395, 1726, 2128, 2166, 2548, 3250, 3939, 4924, 4947 |
| RsaNI | GTAC | 9 cut(s) | 1394, 1725, 2127, 2165, 2547, 3249, 3938, 4923, 4946 |
| RseI | CAYNNNNRTG | 5 cut(s) | 2166, 3389, 4266, 4641, 5178 |
| SacI | GAGCTC | 2 cut(s) | 1254, 4464 |
| SalI | GTCGAC | 1 cut(s) | 3031 |
| SapI | GCTCTTC | 1 cut(s) | 2219 |
| Sau96I | GGNCC | 3 cut(s) | 204, 1690, 1984 |
| ScaI | AGTACT | 1 cut(s) | 2548 |
| SchI | GAGTC | 9 cut(s) | 510, 602, 815, 1502, 2282, 2423, 2466, 3499, 5276 |
| SduI | GDGCHC | 3 cut(s) | 1254, 3062, 4464 |
| SfcI | CTRYAG | 4 cut(s) | 125, 2637, 3195, 3636 |
| SfuI | TTCGAA | 1 cut(s) | 2312 |
| SinI | GGWCC | 2 cut(s) | 204, 1984 |
| SmaI | CCCGGG | 1 cut(s) | 290 |
| SmiI | ATTTAAAT | 3 cut(s) | 2241, 4266, 4641 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 2166, 3389, 4266, 4641, 5178 |
| SmlI | CTYRAG | 2 cut(s) | 1253, 2491 |
| SmoI | CTYRAG | 2 cut(s) | 1253, 2491 |
| SpeI | ACTAGT | 3 cut(s) | 2795, 3908, 4940 |
| SphI | GCATGC | 1 cut(s) | 1322 |
| SsiI | CCGC | 4 cut(s) | 299, 305, 609, 5219 |
| SspMI | CTAG | 9 cut(s) | 1338, 1458, 1622, 2292, 2796, 3449, 3909, 4074, 4941 |
| SstI | GAGCTC | 2 cut(s) | 1254, 4464 |
| StyI | CCWWGG | 5 cut(s) | 2814, 3066, 3228, 3615, 5070 |
| SwaI | ATTTAAAT | 3 cut(s) | 2241, 4266, 4641 |
| TaiI | ACGT | 6 cut(s) | 2170, 2401, 3204, 3875, 4320, 4455 |
| TatI | WGTACW | 4 cut(s) | 2546, 3248, 3937, 4945 |
| TauI | GCSGC | 1 cut(s) | 308 |
| TseFI | GTSAC | 4 cut(s) | 43, 160, 663, 2698 |
| Tsp45I | GTSAC | 4 cut(s) | 43, 160, 663, 2698 |
| TspGWI | ACGGA | 1 cut(s) | 4287 |
| TspMI | CCCGGG | 1 cut(s) | 288 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3188 |
| VpaK11BI | GGWCC | 2 cut(s) | 204, 1984 |
| VspI | ATTAAT | 2 cut(s) | 3084, 3753 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4794 |
| XbaI | TCTAGA | 1 cut(s) | 1621 |
| XceI | RCATGY | 3 cut(s) | 66, 1322, 2165 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1700, 3958 |
| XmaI | CCCGGG | 1 cut(s) | 288 |
| XmiI | GTMKAC | 1 cut(s) | 3032 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1606 |
| XspI | CTAG | 9 cut(s) | 1338, 1458, 1622, 2292, 2796, 3449, 3909, 4074, 4941 |
| ZrmI | AGTACT | 1 cut(s) | 2548 |