Rroxscaffold_6G00390490

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
5572427 .. 5576283
3857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390490.1

Sequence Viewer

Length: 3765 bp
ATGGGGGGATTAGTGTTGGAAATTGGAAGTCAAATCAGCAAGTTTGTGATGATATCAGTGAAAACATGTTGTAAATCAGCTGGCAATCATCCATTTGTTGTGGGCATCCTGCTTTTCCTTATATTTCTGCACAGATCATTTCCTGTTTTGTTTTCTGTTTTGGTGTCAACATCCCCTGTTCTTGTCTGCACTGCTATTCTTCTTGGAACCCTTTTGAGTTTTGGCCAATCCAACATACCCGAAATTGAACGCCAAGACCATATTGCTTCGCTTAGAACCAGGGTTCCAGGCGATGACACTGTCGTTCTTGAGAGAGGTGGCAGCTTTTCCACAGAGAAACTCTCTGCGAGCAGGGATGTTGTCGACTCTGTGGCCCTTGAAGAAGCCGGCTCGACAGATTACACAGTCAATGATGAGGTTGGTGCGCCACTTATTAATCAGAATGTGCAGCAGACTCAGAGTGACAAGAGAGTGGTTGAGGATGTGGACAGAGACATAGAGTTGGAAAATCAGGGCTTGCCAAATGATGAGGAAGCTGTTGAGCAGCAGTATACTTTGCTTCAAAAGGTTCGAGATCAGATTCTCCAAGTGCACGATGATAATGTGTCTCCCCGAGGAGGAGAACACTTGGATTCCTTTCTGGGTGGCTATGGTCATGATGACAGTGGTGATGCTTCTGATTCCGGGTCGGATGGGGCCGAGAGTTCGTCGCCAGATGCTTCAATGGCTGACATCCTTCCAATTCTTGATGAGCTACACCCGCTTTTAGACTCAGAAGCTCCACAGCCTGCTCGTATGTTGCATGATGGATCTGATGCAGCTTCAGATAGTAGTGTTGAGTTGGACCAGGGTGGACAAGTAGATGAGGATGATGGGGTTGATTACAATGGTGGAGATGAGGAAGAAGTACCGGCACACGGTGGCACAGATGATGAAAGCAAATCTGCAATTAAGTGGACAGATGATGACCAAAAGAATCTCATGGATTTGGGAAATTTGGAGCTTGAAAGGAACCAACGCTTGGAGAGTCTTATTGCAAGAAGAAGGGCAAGAAAAAGCTTCAAATTAACGGCTGAGAAGAATCTAATAGATTTTGATGGTGTTGATCTTCCCTTTAATGTTTCACCAATTTCAACAACAAGGCGCAACCCATTCGATTCTCCATTTGATGACTCCTATGGCAACATGCCCATCCCTGGTTCTGCTCCATCCATTATGTTGGCAAGGAGAAATCCTTTTGATCTTCCTTATGACTCCAATGAAGAAAAACCTGACCTCAAGGGAGACCATTTCGAGCAAGAGTTTATTGCATCGCATGCCAACGATGCATTCTTCCAAAGATTGGCTTCAGAAGGAACAGGTTACTCCTCATTTCAAAGACAATCAAGTGAAGTTAGTGAATCAAAGTTGAGTTCTGTTCCTGATAGCGACTCGGTGAGTTCTGTAGCAGATTTGGATGATAGGAAGTTCAGTGAGCAAGACTTTACTAAAGAAACGGAAGTTATCTCCAACATTTATCATGCATCTGGTCTTGTTGACCATGGAAGTCATTCCTATGAAGACGTATATTCCCTGGAAATGGAACAGGCTGACAAAAGGGATGTCCTACACAATGGGCTTGATATAGAATTGGGTAAAAGGGAAAATCTGGAACCAAGCTTGTCGGATAATGGAGCCTTACCTACTGTTGTTACTAATGAACTCCATCTGAATCCAGAATTAGTTGAAGAGGAGGACAGCAGCAGTAGGTCAAGCTTGTCATCATTGTCAGAAGCAGATGAAAAAATTTCAGACGTGAGGAAGGGTGAAAAAAGTTTGGACCCAAGTGGTGATCTCAACAAGGAGTTTCTAATTTCACCGCAACATTCACTTGAGGAGTCAAATGTTCAATTCATGAGCACGACAGCTGATGAAAATCAATTTAAGGAGCCAGTCTACGACTCAACTCCCCTTGACGCAGAAAACCTCATTTCCTTGAACTCCATTTCTTCTGATATGCAAGCAGAGATATCTGAACTAATTAGACCTCAAGCATCAGCGGAAATGTATGAGTCTTTTATGTACAAGGATAATGATGCGGACGGTGAGAACATAGAGAAGGCTATTTCAGGTGATGAAGAGATATGTGGTGCCACCTCAAAAGCACATGAAGCAGATGCAATTGAGGGAGACTTGGGAAACTACAACCAACCCCAGCTAACATCTTCTCTTTCAGAGGTAGAAATCAATCTCCCAAGGAATTTGGAGGTGAATGCAGCTTCTTCAGAATCTAGTTACCACTTTCTTCTTTCCAATGAACAGACATCAGAACAGGAGAAAGACCTATCCTGGTTGGATAAATCCATGGTTGAACCATGTCTTGATGATCATTTGGAAGCTCTTGTTATTGAAGATACTGTCAAGGAAGAGGTGGACGACATAAAGGAGATTGATGCAGAGTTGTTATCAGAATTGGATACCGTTGGAGATTTCAGTGTGAAAGAAGTTGTTGGTGAGCCACTCCATTATGAGTTGATAACAGAGGAAGCTAATGCTGTGAGCACTGAATCTGGGTTGTCGACGGCAGATCCAAACCTGTTAGAGCCCATCCAGGAGCTACCTGTTCTTGAGCACACTCAGGGGGTAGTAGATGTTGATGGGACTTTCAAACAAATTCATGAGGGAGTCAATGTTGAGGAGGTCATGTGTCCTAGCGTGGTTGACAATGAGCTAGAGGTAGTGTCAAAAAGTACAGTGCAGGCCAGTTCACAGTTGCTAACAGTTGAAGCAACATCTTTGGAAGATATTATTACTTCTTCAAATCAAGCTCTAGACAGTTCTGTTAATGAGTTTCCACAACTATTGGATACAGAGGGGTCAGCAGAATTACATCTGGAATTACCTCCAGAGGGTAATGAGGTATCAGCAGATGTCTTGCCTGATGCAGAGGAGGAGATCGCAACAGGCAATATAGGATCCAGTGTTCAAGAAACTTTCACTACGCATATTCCTTTGAAGCAACTATCAGAAGGTAATGTTGCTGAGCTGCCAAATCCATCAAATTCAAAGGATGTATTGGCAGAAGTAGGAACTGAGGCTGTGGTGGAGATTGTATCAAGCAATGTTGTATGTGGTGTTGAAGAAACTGTCACTGATTCTCCTTTGAAGCAACTATCAGAAGGTAATGTTGCTGAGCTGCCAAATCCATCAAATTCAAAGGACGTATTGGCAGAAGTAGGAACTGAGGCTGTGGTGGAGATTGTATCAAGCAATGATGTATATGGTGTTGAAGAAACTATCACTGATTCTCCTTTGAAGCAGTTATCAGAAGGTAATGTTGCTGAGCTGCCAAATCCATCGAATTCAAAGGATGTATTGGCAGAAGTAGGAACTGAGGCTGTGGTGGAGATTGGATCAAGCAATGTTGTTTATGGTGTTGAAGAAACTATCAGTGATTCTCCTTTGAAGCAAGTCTCCGAAGATGACGTCCGTGAGCTGCCAAAACCATCAAATTCAAAGGATGGATGTGAAGAAGTAAGAACTATGGTGGGGGATTCTATAGACGAGATTGGATCGAACAATACAGGATCTGGTGTTCAAGAAACTATCCCTACTCATAGTGCGTTGAAGCAAGTCTCGGAAAGTATTGTGGCTGACTCCATAGAGATTGCATCAGGCAATAGAGAAGTTGTGCAAGAACCTATACCTACTCAAGTTTCAGAAAAGAATGTTGGTGTTGGTGAGCTGCCAAAACCATCTGATTCAAATGATGGATTAGCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1254

Amino Acids

135.71

Weight (kDa)

4.12

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 3468
AccB1I GGYRCC 1 cut(s) 2129
AccB7I CCANNNNNTGG 2 cut(s) 1021, 1342
AccI GTMKAC 4 cut(s) 363, 551, 1935, 2558
AciI CCGC 4 cut(s) 761, 1859, 2039, 2078
AclWI GGATC 7 cut(s) 817, 2561, 2949, 2962, 3400, 3559, 3574
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 8 cut(s) 994, 1785, 2239, 2652, 3040, 3190, 3340, 3490
AcuI CTGAAG 3 cut(s) 807, 1332, 2247
AcyI GRCGYC 1 cut(s) 3465
AdeI CACNNNGTG 1 cut(s) 920
AfaI GTAC 3 cut(s) 909, 2063, 2731
AfiI CCNNNNNNNGG 7 cut(s) 617, 917, 1021, 1196, 1342, 1579, 2888
AflIII ACRYGT 1 cut(s) 65
AjiI CACGTC 1 cut(s) 1795
AjnI CCWGG 7 cut(s) 278, 286, 846, 1195, 1572, 2327, 2589
AjuI GAANNNNNNNTTGG 6 cut(s) 1004, 1036, 1313, 1345, 3693, 3725
AloI GAACNNNNNNTCC 6 cut(s) 268, 300, 2946, 2978, 3558, 3590
Alw21I GWGCWC 4 cut(s) 594, 1901, 2543, 2613
Alw26I GTCTC 6 cut(s) 486, 612, 1278, 2163, 3457, 3619
Alw44I GTGCAC 1 cut(s) 590
AlwI GGATC 7 cut(s) 817, 2561, 2949, 2962, 3400, 3559, 3574
AlwNI CAGNNNCTG 1 cut(s) 3569
Ama87I CYCGRG 1 cut(s) 612
AoxI GGCC 4 cut(s) 223, 372, 696, 2739
ApaLI GTGCAC 1 cut(s) 590
ApoI RAATTY 8 cut(s) 994, 1785, 2239, 2652, 3040, 3190, 3340, 3490
ArsI GACNNNNNNTTYG 4 cut(s) 1587, 1619, 3450, 3482
AseI ATTAAT 1 cut(s) 435
Asp700I GAANNNNTTC 1 cut(s) 1549
AspLEI GCGC 2 cut(s) 427, 1146
AspS9I GGNCC 4 cut(s) 373, 696, 844, 1819
AsuC2I CCSGG 1 cut(s) 685
AvaI CYCGRG 1 cut(s) 612
AvaII GGWCC 2 cut(s) 844, 1819
BaeGI GKGCMC 1 cut(s) 594
BalI TGGCCA 1 cut(s) 225
BamHI GGATCC 1 cut(s) 2954
BanI GGYRCC 1 cut(s) 2129
BanII GRGCYC 1 cut(s) 2586
BbsI GAAGAC 1 cut(s) 1566
Bbv12I GWGCWC 4 cut(s) 594, 1901, 2543, 2613
BceAI ACGGC 2 cut(s) 1086, 2577
BcgI CGANNNNNNTGC 2 cut(s) 1135, 1169
BciT130I CCWGG 7 cut(s) 280, 288, 848, 1197, 1574, 2329, 2591
BciVI GTATCC 2 cut(s) 2449, 2839
BclI TGATCA 1 cut(s) 2365
BcnI CCSGG 1 cut(s) 685
BcoDI GTCTC 6 cut(s) 486, 612, 1278, 2163, 3457, 3619
BfaI CTAG 4 cut(s) 2271, 2691, 2711, 2810
BfmI CTRYAG 2 cut(s) 1443, 3537
BfuI GTATCC 2 cut(s) 2449, 2839
BlpI GCTNAGC 3 cut(s) 3021, 3171, 3321
Bme1390I CCNGG 8 cut(s) 280, 288, 685, 848, 1197, 1574, 2329, 2591
Bme18I GGWCC 2 cut(s) 844, 1819
BmeT110I CYCGRG 1 cut(s) 612
BmgBI CACGTC 1 cut(s) 1795
BmgT120I GGNCC 4 cut(s) 373, 696, 844, 1819
BmrFI CCNGG 8 cut(s) 280, 288, 685, 848, 1197, 1574, 2329, 2591
BpiI GAAGAC 1 cut(s) 1566
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpmI CTGGAG 1 cut(s) 2868
Bpu1102I GCTNAGC 3 cut(s) 3021, 3171, 3321
BpuEI CTTGAG 6 cut(s) 329, 1262, 1892, 2013, 2627, 3675
BpuMI CCSGG 1 cut(s) 685
BsaBI GATNNNNATC 1 cut(s) 1914
BsaHI GRCGYC 1 cut(s) 3465
BsaI GGTCTC 1 cut(s) 1278
BsaJI CCNNGG 8 cut(s) 279, 613, 847, 1195, 1540, 1572, 2234, 2343
BsaXI ACNNNNNCTCC 8 cut(s) 2655, 2669, 2685, 2699, 3121, 3151, 3271, 3301
Bsc4I CCNNNNNNNGG 7 cut(s) 617, 917, 1021, 1196, 1342, 1579, 2888
Bse118I RCCGGY 2 cut(s) 386, 910
Bse1I ACTGG 3 cut(s) 1931, 2742, 2958
Bse3DI GCAATG 3 cut(s) 3106, 3256, 3406
Bse8I GATNNNNATC 1 cut(s) 1914
BseBI CCWGG 7 cut(s) 280, 288, 848, 1197, 1574, 2329, 2591
BseDI CCNNGG 8 cut(s) 279, 613, 847, 1195, 1540, 1572, 2234, 2343
BseJI GATNNNNATC 1 cut(s) 1914
BseLI CCNNNNNNNGG 7 cut(s) 617, 917, 1021, 1196, 1342, 1579, 2888
BseMI GCAATG 3 cut(s) 3106, 3256, 3406
BseNI ACTGG 3 cut(s) 1931, 2742, 2958
BseRI GAGGAG 8 cut(s) 630, 633, 1357, 1745, 1889, 2690, 2942, 2945
BseSI GKGCMC 1 cut(s) 594
BseYI CCCAGC 1 cut(s) 2193
BsgI GTGCAG 4 cut(s) 113, 172, 467, 2756
BshFI GGCC 4 cut(s) 225, 374, 698, 2741
BshNI GGYRCC 1 cut(s) 2129
BsiHKAI GWGCWC 4 cut(s) 594, 1901, 2543, 2613
BsiHKCI CYCGRG 1 cut(s) 612
BsiSI CCGG 3 cut(s) 387, 684, 911
BslFI GGGAC 1 cut(s) 2653
BslI CCNNNNNNNGG 7 cut(s) 617, 917, 1021, 1196, 1342, 1579, 2888
BsmAI GTCTC 6 cut(s) 486, 612, 1278, 2163, 3457, 3619
BsmFI GGGAC 1 cut(s) 2653
BsmI GAATGC 2 cut(s) 1328, 2257
BsnI GGCC 4 cut(s) 225, 374, 698, 2741
Bso31I GGTCTC 1 cut(s) 1278
BsoBI CYCGRG 1 cut(s) 612
Bsp1286I GDGCHC 5 cut(s) 594, 1901, 2543, 2586, 2613
Bsp1407I TGTACA 1 cut(s) 2061
Bsp1720I GCTNAGC 3 cut(s) 3021, 3171, 3321
Bsp19I CCATGG 2 cut(s) 1540, 2343
BspACI CCGC 4 cut(s) 761, 1859, 2039, 2078
BspANI GGCC 4 cut(s) 225, 374, 698, 2741
BspHI TCATGA 3 cut(s) 655, 1893, 2656
BspPI GGATC 7 cut(s) 817, 2561, 2949, 2962, 3400, 3559, 3574
BspT107I GGYRCC 1 cut(s) 2129
BspTNI GGTCTC 1 cut(s) 1278
BsrDI GCAATG 3 cut(s) 3106, 3256, 3406
BsrFI RCCGGY 2 cut(s) 386, 910
BsrGI TGTACA 1 cut(s) 2061
BsrI ACTGG 3 cut(s) 1931, 2742, 2958
BssAI RCCGGY 2 cut(s) 386, 910
BssECI CCNNGG 8 cut(s) 279, 613, 847, 1195, 1540, 1572, 2234, 2343
BssNAI GTATAC 1 cut(s) 552
BssNI GRCGYC 1 cut(s) 3465
BssT1I CCWWGG 3 cut(s) 1540, 2234, 2343
Bst1107I GTATAC 1 cut(s) 552
Bst2UI CCWGG 7 cut(s) 280, 288, 848, 1197, 1574, 2329, 2591
Bst6I CTCTTC 3 cut(s) 1722, 2112, 2400
BstACI GRCGYC 1 cut(s) 3465
BstAPI GCANNNNNTGC 1 cut(s) 1316
BstAUI TGTACA 1 cut(s) 2061
BstC8I GCNNGC 8 cut(s) 82, 349, 388, 518, 789, 1317, 2001, 2739
BstDSI CCRYGG 2 cut(s) 1540, 2343
BstHHI GCGC 2 cut(s) 427, 1146
BstMAI GTCTC 6 cut(s) 486, 612, 1278, 2163, 3457, 3619
BstMWI GCNNNNNNNGC 5 cut(s) 725, 760, 1316, 1325, 2150
BstNI CCWGG 7 cut(s) 280, 288, 848, 1197, 1574, 2329, 2591
BstNSI RCATGY 3 cut(s) 69, 1189, 1319
BstSCI CCNGG 8 cut(s) 278, 286, 683, 846, 1195, 1572, 2327, 2589
BstSFI CTRYAG 2 cut(s) 1443, 3537
BstSLI GKGCMC 1 cut(s) 594
BstV2I GAAGAC 1 cut(s) 1566
BstX2I RGATCY 4 cut(s) 809, 2566, 2954, 3566
BstXI CCANNNNNNTGG 1 cut(s) 1219
BstYI RGATCY 4 cut(s) 809, 2566, 2954, 3566
BstZ17I GTATAC 1 cut(s) 552
BsuI GTATCC 2 cut(s) 2449, 2839
BsuRI GGCC 4 cut(s) 225, 374, 698, 2741
BtgI CCRYGG 2 cut(s) 1540, 2343
BtgZI GCGATG 2 cut(s) 306, 1296
BtrI CACGTC 1 cut(s) 1795
BtsI GCAGTG 1 cut(s) 189
Cac8I GCNNGC 8 cut(s) 82, 349, 388, 518, 789, 1317, 2001, 2739
CaiI CAGNNNCTG 1 cut(s) 3569
CciI TCATGA 3 cut(s) 655, 1893, 2656
CfoI GCGC 2 cut(s) 427, 1146
Cfr10I RCCGGY 2 cut(s) 386, 910
Cfr13I GGNCC 4 cut(s) 373, 696, 844, 1819
CseI GACGC 1 cut(s) 1964
Csp6I GTAC 3 cut(s) 908, 2062, 2730
CspCI CAANNNNNGTGG 2 cut(s) 2823, 2858
CviQI GTAC 3 cut(s) 908, 2062, 2730
DraIII CACNNNGTG 1 cut(s) 920
EaeI YGGCCR 1 cut(s) 223
Eam1104I CTCTTC 3 cut(s) 1722, 2112, 2400
EarI CTCTTC 3 cut(s) 1722, 2112, 2400
Eco130I CCWWGG 3 cut(s) 1540, 2234, 2343
Eco24I GRGCYC 1 cut(s) 2586
Eco31I GGTCTC 1 cut(s) 1278
Eco32I GATATC 2 cut(s) 54, 2010
Eco47I GGWCC 2 cut(s) 844, 1819
Eco57I CTGAAG 3 cut(s) 807, 1332, 2247
Eco88I CYCGRG 1 cut(s) 612
EcoRI GAATTC 1 cut(s) 3340
EcoRII CCWGG 7 cut(s) 278, 286, 846, 1195, 1572, 2327, 2589
EcoRV GATATC 2 cut(s) 54, 2010
EcoT14I CCWWGG 3 cut(s) 1540, 2234, 2343
EcoT22I ATGCAT 2 cut(s) 1330, 1525
EcoT38I GRGCYC 1 cut(s) 2586
ErhI CCWWGG 3 cut(s) 1540, 2234, 2343
FalI AAGNNNNNCTT 2 cut(s) 1330, 1362
FaqI GGGAC 1 cut(s) 2653
FauI CCCGC 1 cut(s) 768
FbaI TGATCA 1 cut(s) 2365
FblI GTMKAC 4 cut(s) 363, 551, 1935, 2558
FriOI GRGCYC 1 cut(s) 2586
FspBI CTAG 4 cut(s) 2271, 2691, 2711, 2810
GlaI GCGC 2 cut(s) 426, 1145
GsaI CCCAGC 1 cut(s) 2197
GsuI CTGGAG 1 cut(s) 2868
HaeIII GGCC 4 cut(s) 225, 374, 698, 2741
HapII CCGG 3 cut(s) 387, 684, 911
HgaI GACGC 1 cut(s) 1964
HhaI GCGC 2 cut(s) 427, 1146
Hin1I GRCGYC 1 cut(s) 3465
Hin6I GCGC 2 cut(s) 425, 1144
HinP1I GCGC 2 cut(s) 425, 1144
HincII GTYRAC 5 cut(s) 168, 364, 1537, 2559, 2701
HindII GTYRAC 5 cut(s) 168, 364, 1537, 2559, 2701
HindIII AAGCTT 3 cut(s) 1057, 1657, 1753
HpaII CCGG 3 cut(s) 387, 684, 911
Hpy99I CGWCG 2 cut(s) 712, 2563
HpyAV CCTTC 8 cut(s) 746, 1038, 1346, 1795, 2092, 3002, 3152, 3302
HpyCH4IV ACGT 4 cut(s) 1563, 1794, 3201, 3465
HpyF10VI GCNNNNNNNGC 5 cut(s) 725, 760, 1316, 1325, 2150
HpySE526I ACGT 4 cut(s) 1563, 1794, 3201, 3465
Hsp92I GRCGYC 1 cut(s) 3465
HspAI GCGC 2 cut(s) 425, 1144
KroI GCCGGC 1 cut(s) 386
KroNI GCCGGC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 2365
LmnI GCTCC 6 cut(s) 784, 1000, 1210, 1673, 1927, 2593
MaeI CTAG 4 cut(s) 2271, 2691, 2711, 2810
MaeII ACGT 4 cut(s) 1563, 1794, 3201, 3465
MaeIII GTNAC 5 cut(s) 461, 1361, 1690, 2273, 3127
MfeI CAATTG 1 cut(s) 2160
MflI RGATCY 4 cut(s) 809, 2566, 2954, 3566
MhlI GDGCHC 5 cut(s) 594, 1901, 2543, 2586, 2613
MlsI TGGCCA 1 cut(s) 225
MluNI TGGCCA 1 cut(s) 225
MmeI TCCRAC 8 cut(s) 255, 483, 669, 822, 1533, 1644, 2313, 2443
Mox20I TGGCCA 1 cut(s) 225
Mph1103I ATGCAT 2 cut(s) 1330, 1525
MroNI GCCGGC 1 cut(s) 386
MroXI GAANNNNTTC 1 cut(s) 1549
MscI TGGCCA 1 cut(s) 225
MseI TTAA 6 cut(s) 435, 951, 1067, 1116, 1923, 2823
MslI CAYNNNNRTG 1 cut(s) 1554
Msp20I TGGCCA 1 cut(s) 225
MspA1I CMGCKG 3 cut(s) 80, 1907, 2039
MspI CCGG 3 cut(s) 387, 684, 911
MspR9I CCNGG 8 cut(s) 280, 288, 685, 848, 1197, 1574, 2329, 2591
MunI CAATTG 1 cut(s) 2160
Mva1269I GAATGC 2 cut(s) 1328, 2257
MvaI CCWGG 7 cut(s) 280, 288, 848, 1197, 1574, 2329, 2591
MwoI GCNNNNNNNGC 5 cut(s) 725, 760, 1316, 1325, 2150
NaeI GCCGGC 1 cut(s) 388
NciI CCSGG 1 cut(s) 685
NcoI CCATGG 2 cut(s) 1540, 2343
NgoMIV GCCGGC 1 cut(s) 386
NmeAIII GCCGAG 1 cut(s) 724
NmuCI GTSAC 2 cut(s) 461, 3127
NsiI ATGCAT 2 cut(s) 1330, 1525
NspI RCATGY 3 cut(s) 69, 1189, 1319
PaeI GCATGC 1 cut(s) 1319
PagI TCATGA 3 cut(s) 655, 1893, 2656
PciI ACATGT 1 cut(s) 65
PctI GAATGC 2 cut(s) 1328, 2257
PdiI GCCGGC 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 1549
PflFI GACNNNGTC 1 cut(s) 299
PflMI CCANNNNNTGG 2 cut(s) 1021, 1342
PfoI TCCNGGA 1 cut(s) 2589
PscI ACATGT 1 cut(s) 65
PshBI ATTAAT 1 cut(s) 435
Psp6I CCWGG 7 cut(s) 278, 286, 846, 1195, 1572, 2327, 2589
PspFI CCCAGC 1 cut(s) 2193
PspGI CCWGG 7 cut(s) 278, 286, 846, 1195, 1572, 2327, 2589
PspPI GGNCC 4 cut(s) 373, 696, 844, 1819
PstNI CAGNNNCTG 1 cut(s) 3569
PsuI RGATCY 4 cut(s) 809, 2566, 2954, 3566
PsyI GACNNNGTC 1 cut(s) 299
PvuII CAGCTG 2 cut(s) 80, 1907
RsaI GTAC 3 cut(s) 909, 2063, 2731
RsaNI GTAC 3 cut(s) 908, 2062, 2730
RseI CAYNNNNRTG 1 cut(s) 1554
SalI GTCGAC 2 cut(s) 362, 2557
SaqAI TTAA 6 cut(s) 435, 951, 1067, 1116, 1923, 2823
Sau96I GGNCC 4 cut(s) 373, 696, 844, 1819
ScrFI CCNGG 8 cut(s) 280, 288, 685, 848, 1197, 1574, 2329, 2591
SduI GDGCHC 5 cut(s) 594, 1901, 2543, 2586, 2613
SfcI CTRYAG 2 cut(s) 1443, 3537
SinI GGWCC 2 cut(s) 844, 1819
SmiMI CAYNNNNRTG 1 cut(s) 1554
SmlI CTYRAG 6 cut(s) 308, 1277, 1871, 2028, 2606, 3690
SmoI CTYRAG 6 cut(s) 308, 1277, 1871, 2028, 2606, 3690
SphI GCATGC 1 cut(s) 1319
SsiI CCGC 4 cut(s) 761, 1859, 2039, 2078
SspMI CTAG 4 cut(s) 2271, 2691, 2711, 2810
StyD4I CCNGG 8 cut(s) 278, 286, 683, 846, 1195, 1572, 2327, 2589
StyI CCWWGG 3 cut(s) 1540, 2234, 2343
TaiI ACGT 4 cut(s) 1566, 1797, 3204, 3468
TaqI TCGA 8 cut(s) 363, 392, 571, 1155, 1293, 2558, 3338, 3554
TatI WGTACW 2 cut(s) 2061, 2729
Tru1I TTAA 6 cut(s) 435, 951, 1067, 1116, 1923, 2823
Tru9I TTAA 6 cut(s) 435, 951, 1067, 1116, 1923, 2823
TseFI GTSAC 2 cut(s) 461, 3127
Tsp45I GTSAC 2 cut(s) 461, 3127
TspGWI ACGGA 2 cut(s) 1511, 3458
Tth111I GACNNNGTC 1 cut(s) 299
Van91I CCANNNNNTGG 2 cut(s) 1021, 1342
VneI GTGCAC 1 cut(s) 590
VpaK11BI GGWCC 2 cut(s) 844, 1819
VspI ATTAAT 1 cut(s) 435
XapI RAATTY 8 cut(s) 994, 1785, 2239, 2652, 3040, 3190, 3340, 3490
XbaI TCTAGA 1 cut(s) 2809
XceI RCATGY 3 cut(s) 69, 1189, 1319
XmiI GTMKAC 4 cut(s) 363, 551, 1935, 2558
XmnI GAANNNNTTC 1 cut(s) 1549
XspI CTAG 4 cut(s) 2271, 2691, 2711, 2810
ZraI GACGTC 1 cut(s) 3466
Zsp2I ATGCAT 2 cut(s) 1330, 1525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.