Rorug06G0028700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002241
Physical Location & Seq
Reverse (-)
3426118 .. 3426450
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0028700.1

Sequence Viewer

Length: 333 bp
ATGGGGATTCGATTGCAAGAGATGGTTGTTCATGCTAAGCACATTATGCAGCTGCGCCGGCATGCAGCGACGTCGTCTAAGAACCAAATAAGGTGCAGCAGTACTACTAGTAATAATGTTGATGATGTGCCGAAAGGTCATTTCGCAATTTATGTAGGGGTAGAAGAAGAGAAGAAGGAGCGGTTTGTGGTTCCTATTTCATACTTGAAGCAACCGATGTTCCAAGACTTGCTGCTCAAGGCTGCCGAGGAGTTTGGTTTTGATCAAATGGGTGGCATTACACTTCCGTGTGGAGTAGAAGACTTTACTAGTCTTACTTCTCGTCTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.41

Weight (kDa)

6.9

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 17 - 108 2.7e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 181
AciI CCGC 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 103
AgsI TTSAA 1 cut(s) 208
AhlI ACTAGT 2 cut(s) 107, 308
AleI CACNNNNGTG 1 cut(s) 286
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
ApeKI GCWGC 6 cut(s) 49, 52, 65, 96, 232, 242
AspLEI GCGC 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 6 cut(s) 39, 61, 77, 108, 219, 229
BccI CCATC 1 cut(s) 16
BcgI CGANNNNNNTGC 2 cut(s) 54, 88
BclI TGATCA 1 cut(s) 262
BcuI ACTAGT 2 cut(s) 107, 308
BfaI CTAG 2 cut(s) 108, 309
BisI GCNGC 6 cut(s) 50, 53, 66, 97, 233, 243
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 6 cut(s) 51, 54, 67, 98, 234, 244
BmcAI AGTACT 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 306
Bpu1102I GCTNAGC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 246
Bse118I RCCGGY 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 6 cut(s) 39, 61, 77, 108, 219, 229
BsgI GTGCAG 1 cut(s) 115
BsiSI CCGG 1 cut(s) 58
Bsp143I GATC 1 cut(s) 262
Bsp1720I GCTNAGC 1 cut(s) 36
BspACI CCGC 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 192
BsrBI CCGCTC 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 59, 63
BstDEI CTNAG 2 cut(s) 36, 78
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 46, 58
BstNSI RCATGY 1 cut(s) 65
BstV1I GCAGC 6 cut(s) 39, 61, 77, 108, 219, 229
BstV2I GAAGAC 1 cut(s) 306
Cac8I GCNNGC 2 cut(s) 59, 63
CfoI GCGC 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 57
Csp6I GTAC 1 cut(s) 102
CviAII CATG 2 cut(s) 32, 62
CviJI RGCY 2 cut(s) 52, 242
CviKI_1 RGCY 2 cut(s) 52, 242
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 2 cut(s) 36, 78
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
FaeI CATG 2 cut(s) 35, 65
FaiI YATR 5 cut(s) 33, 47, 63, 153, 202
FatI CATG 2 cut(s) 31, 61
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 6 cut(s) 50, 53, 66, 97, 233, 243
Fsp4HI GCNGC 6 cut(s) 50, 53, 66, 97, 233, 243
FspBI CTAG 2 cut(s) 108, 309
GlaI GCGC 1 cut(s) 56
GluI GCNGC 6 cut(s) 50, 53, 66, 97, 233, 243
HapII CCGG 1 cut(s) 58
HhaI GCGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 2 cut(s) 35, 65
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 58
Hpy99I CGWCG 2 cut(s) 73, 76
HpyAV CCTTC 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 4 cut(s) 16, 49, 65, 96
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 58
HpyF3I CTNAG 2 cut(s) 36, 78
HpySE526I ACGT 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 2 cut(s) 35, 65
HspAI GCGC 1 cut(s) 55
KroI GCCGGC 1 cut(s) 57
KroNI GCCGGC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 1 cut(s) 71
Lsp1109I GCAGC 6 cut(s) 39, 61, 77, 108, 219, 229
MaeI CTAG 2 cut(s) 108, 309
MaeII ACGT 1 cut(s) 71
MalI GATC 1 cut(s) 264
MbiI CCGCTC 1 cut(s) 181
MboI GATC 1 cut(s) 262
MboII GAAGA 4 cut(s) 176, 179, 184, 311
MluCI AATT 2 cut(s) 147, 328
MnlI CCTC 1 cut(s) 241
MroNI GCCGGC 1 cut(s) 57
MseI TTAA 1 cut(s) 331
MslI CAYNNNNRTG 1 cut(s) 286
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 46, 58
NaeI GCCGGC 1 cut(s) 59
NdeII GATC 1 cut(s) 262
NgoMIV GCCGGC 1 cut(s) 57
NlaIII CATG 2 cut(s) 35, 65
NlaIV GGNNCC 1 cut(s) 192
NmeAIII GCCGAG 1 cut(s) 271
NspI RCATGY 1 cut(s) 65
OliI CACNNNNGTG 1 cut(s) 286
PaeI GCATGC 1 cut(s) 65
PdiI GCCGGC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 73
PkrI GCNGC 6 cut(s) 51, 54, 67, 98, 234, 244
PspN4I GGNNCC 1 cut(s) 192
PsyI GACNNNGTC 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 286
SaqAI TTAA 1 cut(s) 331
SatI GCNGC 6 cut(s) 50, 53, 66, 97, 233, 243
Sau3AI GATC 1 cut(s) 262
ScaI AGTACT 1 cut(s) 103
SetI ASST 4 cut(s) 54, 74, 95, 139
SmiMI CAYNNNNRTG 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SpeI ACTAGT 2 cut(s) 107, 308
SphI GCATGC 1 cut(s) 65
Sse9I AATT 2 cut(s) 147, 328
SsiI CCGC 1 cut(s) 181
SspMI CTAG 2 cut(s) 108, 309
TaiI ACGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 10
TasI AATT 2 cut(s) 147, 328
TatI WGTACW 1 cut(s) 101
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TseI GCWGC 6 cut(s) 49, 52, 65, 96, 232, 242
TspDTI ATGAA 2 cut(s) 20, 189
TspGWI ACGGA 1 cut(s) 276
Tth111I GACNNNGTC 1 cut(s) 73
XceI RCATGY 1 cut(s) 65
XspI CTAG 2 cut(s) 108, 309
ZraI GACGTC 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.