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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G17910 AT5G17910 AT5G17910 |
| fragaria_vesca | FvH4_1g29420 FvH4_1g29420 FvH4_1g29420 FvH4_2g10091 FvH4_2g10092 |
| malus_domestica | MD05G1057800.v1.1 MD12G1015000.v1.1 MD14G1012900.v1.1 |
| prunus_persica | Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1 |
| pyrus_communis | pycom05g04890 pycom12g01220 pycom14g01090 |
| rosa_chinensis | RchiOBHm_Chr3g0495491 RchiOBHm_Chr6g0267051 |
| rosa_laevigata | RLG00000014046 RLG00000022616 |
| rosa_multiflora | Rmu_co8285861.1_g000001 Rmu_sc0004755.1_g000026 Rmu_sc0005599.1_g000001 Rmu_sc0006163.1_g000016 Rmu_sc0013804.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00390490 Rroxscaffold_7G00201200 |
| rosa_rugosa | Rorug03G0273800 Rorug06G0028700 |
| rosa_samantha | Rh3AG321400 Rh3BG356700 Rh3CG353500 Rh3DG356000 Rh6AG150200 Rh6BG151100 Rh6CG146500 Rh6DG135200 |
| rosa_wichuraiana | Rw3G028090 Rw6G013020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2138 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 95, 4803 |
| AccI | GTMKAC | 1 cut(s) | 3974 |
| AccII | CGCG | 1 cut(s) | 2275 |
| AciI | CCGC | 4 cut(s) | 422, 1584, 2273, 3854 |
| AclI | AACGTT | 1 cut(s) | 3267 |
| AclWI | GGATC | 8 cut(s) | 766, 1184, 1912, 2989, 3214, 3523, 4270, 4549 |
| AcoI | YGGCCR | 1 cut(s) | 1675 |
| AcuI | CTGAAG | 6 cut(s) | 690, 1381, 2073, 2517, 2817, 3279 |
| AdeI | CACNNNGTG | 1 cut(s) | 959 |
| AfaI | GTAC | 3 cut(s) | 1470, 1807, 2364 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 95, 345, 1238, 4803 |
| AflIII | ACRYGT | 1 cut(s) | 62 |
| AjiI | CACGTC | 1 cut(s) | 2356 |
| AjnI | CCWGG | 2 cut(s) | 1237, 2389 |
| AleI | CACNNNNGTG | 1 cut(s) | 642 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3198, 3230 |
| Alw21I | GWGCWC | 1 cut(s) | 2617 |
| AlwI | GGATC | 8 cut(s) | 766, 1184, 1912, 2989, 3214, 3523, 4270, 4549 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 2795, 3209, 4007, 4169 |
| Ama87I | CYCGRG | 1 cut(s) | 288 |
| AoxI | GGCC | 1 cut(s) | 1675 |
| ApeKI | GCWGC | 3 cut(s) | 3653, 4075, 4286 |
| AseI | ATTAAT | 2 cut(s) | 3486, 4467 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 885 |
| AspS9I | GGNCC | 5 cut(s) | 204, 1406, 2386, 3629, 4207 |
| AsuC2I | CCSGG | 2 cut(s) | 3471, 4329 |
| AsuII | TTCGAA | 2 cut(s) | 1541, 2483 |
| AvaI | CYCGRG | 1 cut(s) | 288 |
| AvaII | GGWCC | 5 cut(s) | 204, 1406, 2386, 3629, 4207 |
| BalI | TGGCCA | 1 cut(s) | 1677 |
| BbsI | GAAGAC | 1 cut(s) | 507 |
| Bbv12I | GWGCWC | 1 cut(s) | 2617 |
| BbvI | GCAGC | 3 cut(s) | 3665, 4062, 4298 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1243, 1277 |
| BciT130I | CCWGG | 2 cut(s) | 1239, 2391 |
| BclI | TGATCA | 4 cut(s) | 646, 1315, 2284, 3538 |
| BcnI | CCSGG | 2 cut(s) | 3471, 4329 |
| BfmI | CTRYAG | 2 cut(s) | 372, 1381 |
| BglII | AGATCT | 2 cut(s) | 3044, 3368 |
| BisI | GCNGC | 4 cut(s) | 422, 3654, 4076, 4287 |
| BlsI | GCNGC | 4 cut(s) | 423, 3655, 4077, 4288 |
| Bme1390I | CCNGG | 4 cut(s) | 1239, 2391, 3471, 4329 |
| Bme18I | GGWCC | 5 cut(s) | 204, 1406, 2386, 3629, 4207 |
| BmeT110I | CYCGRG | 1 cut(s) | 288 |
| BmgBI | CACGTC | 1 cut(s) | 2356 |
| BmgT120I | GGNCC | 5 cut(s) | 204, 1406, 2386, 3629, 4207 |
| BmiI | GGNNCC | 6 cut(s) | 205, 206, 1407, 1791, 2028, 2388 |
| BmrFI | CCNGG | 4 cut(s) | 1239, 2391, 3471, 4329 |
| BmrI | ACTGGG | 1 cut(s) | 480 |
| BmuI | ACTGGG | 1 cut(s) | 480 |
| BpiI | GAAGAC | 1 cut(s) | 507 |
| BpmI | CTGGAG | 2 cut(s) | 1470, 4563 |
| Bpu10I | CCTNAGC | 2 cut(s) | 557, 1417 |
| Bpu14I | TTCGAA | 2 cut(s) | 1541, 2483 |
| BpuEI | CTTGAG | 3 cut(s) | 1991, 2026, 2601 |
| BpuMI | CCSGG | 2 cut(s) | 3471, 4329 |
| Bsa29I | ATCGAT | 2 cut(s) | 1253, 4247 |
| BsaAI | YACGTR | 1 cut(s) | 3995 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2142 |
| BsaI | GGTCTC | 2 cut(s) | 1450, 4577 |
| BsaJI | CCNNGG | 6 cut(s) | 2262, 2389, 2580, 3180, 3816, 3978 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 95, 345, 1238, 4803 |
| Bse118I | RCCGGY | 1 cut(s) | 2305 |
| Bse1I | ACTGG | 3 cut(s) | 475, 3089, 4447 |
| Bse3DI | GCAATG | 5 cut(s) | 270, 1534, 3228, 3648, 4507 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2142 |
| BseBI | CCWGG | 2 cut(s) | 1239, 2391 |
| BseCI | ATCGAT | 2 cut(s) | 1253, 4247 |
| BseDI | CCNNGG | 6 cut(s) | 2262, 2389, 2580, 3180, 3816, 3978 |
| BseJI | GATNNNNATC | 1 cut(s) | 2142 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 95, 345, 1238, 4803 |
| BseMI | GCAATG | 5 cut(s) | 270, 1534, 3228, 3648, 4507 |
| BseMII | CTCAG | 9 cut(s) | 984, 2148, 2292, 3432, 3906, 4068, 4230, 4506, 4623 |
| BseNI | ACTGG | 3 cut(s) | 475, 3089, 4447 |
| BseRI | GAGGAG | 1 cut(s) | 1087 |
| BseXI | GCAGC | 3 cut(s) | 3665, 4062, 4298 |
| BsgI | GTGCAG | 2 cut(s) | 110, 4467 |
| Bsh1236I | CGCG | 1 cut(s) | 2275 |
| BshFI | GGCC | 1 cut(s) | 1677 |
| BshVI | ATCGAT | 2 cut(s) | 1253, 4247 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2617 |
| BsiHKCI | CYCGRG | 1 cut(s) | 288 |
| BsiSI | CCGG | 3 cut(s) | 2306, 3471, 4329 |
| BslFI | GGGAC | 3 cut(s) | 217, 1419, 3563 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 95, 345, 1238, 4803 |
| BsmFI | GGGAC | 3 cut(s) | 217, 1419, 3563 |
| BsmI | GAATGC | 2 cut(s) | 108, 3967 |
| BsnI | GGCC | 1 cut(s) | 1677 |
| Bso31I | GGTCTC | 2 cut(s) | 1450, 4577 |
| BsoBI | CYCGRG | 1 cut(s) | 288 |
| Bsp119I | TTCGAA | 2 cut(s) | 1541, 2483 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2617 |
| Bsp19I | CCATGG | 1 cut(s) | 2262 |
| BspACI | CCGC | 4 cut(s) | 422, 1584, 2273, 3854 |
| BspANI | GGCC | 1 cut(s) | 1677 |
| BspCNI | CTCAG | 9 cut(s) | 985, 2147, 2293, 3431, 3905, 4067, 4229, 4505, 4624 |
| BspDI | ATCGAT | 2 cut(s) | 1253, 4247 |
| BspFNI | CGCG | 1 cut(s) | 2275 |
| BspHI | TCATGA | 3 cut(s) | 1558, 3217, 4669 |
| BspLI | GGNNCC | 6 cut(s) | 205, 206, 1407, 1791, 2028, 2388 |
| BspMAI | CTGCAG | 1 cut(s) | 376 |
| BspPI | GGATC | 8 cut(s) | 766, 1184, 1912, 2989, 3214, 3523, 4270, 4549 |
| BspQI | GCTCTTC | 1 cut(s) | 1072 |
| BspT104I | TTCGAA | 2 cut(s) | 1541, 2483 |
| BspTNI | GGTCTC | 2 cut(s) | 1450, 4577 |
| BsrDI | GCAATG | 5 cut(s) | 270, 1534, 3228, 3648, 4507 |
| BsrFI | RCCGGY | 1 cut(s) | 2305 |
| BsrI | ACTGG | 3 cut(s) | 475, 3089, 4447 |
| BssAI | RCCGGY | 1 cut(s) | 2305 |
| BssECI | CCNNGG | 6 cut(s) | 2262, 2389, 2580, 3180, 3816, 3978 |
| BssT1I | CCWWGG | 5 cut(s) | 2262, 2580, 3180, 3816, 3978 |
| Bst2UI | CCWGG | 2 cut(s) | 1239, 2391 |
| Bst4CI | ACNGT | 5 cut(s) | 497, 1334, 1410, 1479, 1521 |
| Bst6I | CTCTTC | 3 cut(s) | 906, 1072, 1428 |
| BstBAI | YACGTR | 1 cut(s) | 3995 |
| BstBI | TTCGAA | 2 cut(s) | 1541, 2483 |
| BstC8I | GCNNGC | 5 cut(s) | 440, 554, 2100, 2743, 4073 |
| BstDSI | CCRYGG | 1 cut(s) | 2262 |
| BstEII | GGTNACC | 1 cut(s) | 1224 |
| BstFNI | CGCG | 1 cut(s) | 2275 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 755, 1631, 2840 |
| BstNI | CCWGG | 2 cut(s) | 1239, 2391 |
| BstNSI | RCATGY | 3 cut(s) | 66, 556, 2098 |
| BstPI | GGTNACC | 1 cut(s) | 1224 |
| BstSCI | CCNGG | 4 cut(s) | 1237, 2389, 3469, 4327 |
| BstSFI | CTRYAG | 2 cut(s) | 372, 1381 |
| BstUI | CGCG | 1 cut(s) | 2275 |
| BstV1I | GCAGC | 3 cut(s) | 3665, 4062, 4298 |
| BstV2I | GAAGAC | 1 cut(s) | 507 |
| BstX2I | RGATCY | 4 cut(s) | 3044, 3206, 3368, 4262 |
| BstYI | RGATCY | 4 cut(s) | 3044, 3206, 3368, 4262 |
| Bsu15I | ATCGAT | 2 cut(s) | 1253, 4247 |
| BsuRI | GGCC | 1 cut(s) | 1677 |
| BsuTUI | ATCGAT | 2 cut(s) | 1253, 4247 |
| BtgI | CCRYGG | 1 cut(s) | 2262 |
| BtgZI | GCGATG | 1 cut(s) | 954 |
| BtrI | CACGTC | 1 cut(s) | 2356 |
| BtsI | GCAGTG | 5 cut(s) | 369, 2850, 3498, 3972, 4572 |
| Cac8I | GCNNGC | 5 cut(s) | 440, 554, 2100, 2743, 4073 |
| CaiI | CAGNNNCTG | 4 cut(s) | 2795, 3209, 4007, 4169 |
| CciI | TCATGA | 3 cut(s) | 1558, 3217, 4669 |
| Cfr10I | RCCGGY | 1 cut(s) | 2305 |
| Cfr13I | GGNCC | 5 cut(s) | 204, 1406, 2386, 3629, 4207 |
| ClaI | ATCGAT | 2 cut(s) | 1253, 4247 |
| CseI | GACGC | 1 cut(s) | 4467 |
| Csp6I | GTAC | 3 cut(s) | 1469, 1806, 2363 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 3150, 3185, 4548, 4583 |
| CviQI | GTAC | 3 cut(s) | 1469, 1806, 2363 |
| DraI | TTTAAA | 2 cut(s) | 2973, 3408 |
| DraIII | CACNNNGTG | 1 cut(s) | 959 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2138 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2138 |
| EaeI | YGGCCR | 1 cut(s) | 1675 |
| Eam1104I | CTCTTC | 3 cut(s) | 906, 1072, 1428 |
| EarI | CTCTTC | 3 cut(s) | 906, 1072, 1428 |
| Eco130I | CCWWGG | 5 cut(s) | 2262, 2580, 3180, 3816, 3978 |
| Eco31I | GGTCTC | 2 cut(s) | 1450, 4577 |
| Eco32I | GATATC | 2 cut(s) | 2109, 3027 |
| Eco47I | GGWCC | 5 cut(s) | 204, 1406, 2386, 3629, 4207 |
| Eco57I | CTGAAG | 6 cut(s) | 690, 1381, 2073, 2517, 2817, 3279 |
| Eco88I | CYCGRG | 1 cut(s) | 288 |
| Eco91I | GGTNACC | 1 cut(s) | 1224 |
| EcoO109I | RGGNCCY | 2 cut(s) | 204, 2386 |
| EcoO65I | GGTNACC | 1 cut(s) | 1224 |
| EcoRII | CCWGG | 2 cut(s) | 1237, 2389 |
| EcoRV | GATATC | 2 cut(s) | 2109, 3027 |
| EcoT14I | CCWWGG | 5 cut(s) | 2262, 2580, 3180, 3816, 3978 |
| EcoT22I | ATGCAT | 6 cut(s) | 169, 751, 2707, 2920, 3193, 3805 |
| ErhI | CCWWGG | 5 cut(s) | 2262, 2580, 3180, 3816, 3978 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1835, 1867 |
| FaqI | GGGAC | 3 cut(s) | 217, 1419, 3563 |
| FauNDI | CATATG | 1 cut(s) | 3399 |
| FbaI | TGATCA | 4 cut(s) | 646, 1315, 2284, 3538 |
| FblI | GTMKAC | 1 cut(s) | 3974 |
| Fnu4HI | GCNGC | 4 cut(s) | 422, 3654, 4076, 4287 |
| Fsp4HI | GCNGC | 4 cut(s) | 422, 3654, 4076, 4287 |
| GluI | GCNGC | 4 cut(s) | 422, 3654, 4076, 4287 |
| GsuI | CTGGAG | 2 cut(s) | 1470, 4563 |
| HaeIII | GGCC | 1 cut(s) | 1677 |
| HapII | CCGG | 3 cut(s) | 2306, 3471, 4329 |
| HgaI | GACGC | 1 cut(s) | 4467 |
| HincII | GTYRAC | 2 cut(s) | 28, 3309 |
| HindII | GTYRAC | 2 cut(s) | 28, 3309 |
| HindIII | AAGCTT | 5 cut(s) | 1090, 1393, 1795, 1849, 2172 |
| HpaI | GTTAAC | 1 cut(s) | 28 |
| HpaII | CCGG | 3 cut(s) | 2306, 3471, 4329 |
| Hpy166II | GTNNAC | 5 cut(s) | 28, 1987, 3309, 3975, 4207 |
| Hpy8I | GTNNAC | 5 cut(s) | 28, 1987, 3309, 3975, 4207 |
| Hpy99I | CGWCG | 1 cut(s) | 1414 |
| HpyCH4III | ACNGT | 5 cut(s) | 497, 1334, 1410, 1479, 1521 |
| HpyCH4IV | ACGT | 4 cut(s) | 2355, 3239, 3267, 3994 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 755, 1631, 2840 |
| HpySE526I | ACGT | 4 cut(s) | 2355, 3239, 3267, 3994 |
| KflI | GGGWCCC | 1 cut(s) | 204 |
| Ksp22I | TGATCA | 4 cut(s) | 646, 1315, 2284, 3538 |
| KspAI | GTTAAC | 1 cut(s) | 28 |
| LguI | GCTCTTC | 1 cut(s) | 1072 |
| LmnI | GCTCC | 5 cut(s) | 1033, 1252, 1489, 1789, 2026 |
| Lsp1109I | GCAGC | 3 cut(s) | 3665, 4062, 4298 |
| MaeII | ACGT | 4 cut(s) | 2355, 3239, 3267, 3994 |
| MfeI | CAATTG | 2 cut(s) | 627, 985 |
| MflI | RGATCY | 4 cut(s) | 3044, 3206, 3368, 4262 |
| MhlI | GDGCHC | 1 cut(s) | 2617 |
| MlsI | TGGCCA | 1 cut(s) | 1677 |
| MluNI | TGGCCA | 1 cut(s) | 1677 |
| MlyI | GAGTC | 6 cut(s) | 668, 839, 881, 2033, 2072, 2126 |
| MmeI | TCCRAC | 6 cut(s) | 252, 391, 3574, 3934, 4369, 4519 |
| Mox20I | TGGCCA | 1 cut(s) | 1677 |
| Mph1103I | ATGCAT | 6 cut(s) | 169, 751, 2707, 2920, 3193, 3805 |
| MroXI | GAANNNNTTC | 1 cut(s) | 885 |
| MscI | TGGCCA | 1 cut(s) | 1677 |
| MslI | CAYNNNNRTG | 3 cut(s) | 642, 4200, 4355 |
| Msp20I | TGGCCA | 1 cut(s) | 1677 |
| MspI | CCGG | 3 cut(s) | 2306, 3471, 4329 |
| MspR9I | CCNGG | 4 cut(s) | 1239, 2391, 3471, 4329 |
| MunI | CAATTG | 2 cut(s) | 627, 985 |
| Mva1269I | GAATGC | 2 cut(s) | 108, 3967 |
| MvaI | CCWGG | 2 cut(s) | 1239, 2391 |
| MvnI | CGCG | 1 cut(s) | 2275 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 755, 1631, 2840 |
| NciI | CCSGG | 2 cut(s) | 3471, 4329 |
| NcoI | CCATGG | 1 cut(s) | 2262 |
| NdeI | CATATG | 1 cut(s) | 3399 |
| NlaIV | GGNNCC | 6 cut(s) | 205, 206, 1407, 1791, 2028, 2388 |
| NmeAIII | GCCGAG | 1 cut(s) | 1132 |
| NmuCI | GTSAC | 3 cut(s) | 1863, 2902, 2961 |
| NsiI | ATGCAT | 6 cut(s) | 169, 751, 2707, 2920, 3193, 3805 |
| NspI | RCATGY | 3 cut(s) | 66, 556, 2098 |
| NspV | TTCGAA | 2 cut(s) | 1541, 2483 |
| OliI | CACNNNNGTG | 1 cut(s) | 642 |
| PacI | TTAATTAA | 1 cut(s) | 2256 |
| PaeI | GCATGC | 1 cut(s) | 556 |
| PagI | TCATGA | 3 cut(s) | 1558, 3217, 4669 |
| PciI | ACATGT | 1 cut(s) | 62 |
| PciSI | GCTCTTC | 1 cut(s) | 1072 |
| PctI | GAATGC | 2 cut(s) | 108, 3967 |
| PdmI | GAANNNNTTC | 1 cut(s) | 885 |
| PflFI | GACNNNGTC | 1 cut(s) | 2959 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 95, 4803 |
| PkrI | GCNGC | 4 cut(s) | 423, 3655, 4077, 4288 |
| PleI | GAGTC | 6 cut(s) | 667, 838, 880, 2033, 2072, 2126 |
| PpsI | GAGTC | 6 cut(s) | 667, 838, 880, 2033, 2072, 2126 |
| Ppu21I | YACGTR | 1 cut(s) | 3995 |
| PpuMI | RGGWCCY | 2 cut(s) | 204, 2386 |
| PscI | ACATGT | 1 cut(s) | 62 |
| PshBI | ATTAAT | 2 cut(s) | 3486, 4467 |
| Psp1406I | AACGTT | 1 cut(s) | 3267 |
| Psp5II | RGGWCCY | 2 cut(s) | 204, 2386 |
| Psp6I | CCWGG | 2 cut(s) | 1237, 2389 |
| PspEI | GGTNACC | 1 cut(s) | 1224 |
| PspGI | CCWGG | 2 cut(s) | 1237, 2389 |
| PspN4I | GGNNCC | 6 cut(s) | 205, 206, 1407, 1791, 2028, 2388 |
| PspPI | GGNCC | 5 cut(s) | 204, 1406, 2386, 3629, 4207 |
| PspPPI | RGGWCCY | 2 cut(s) | 204, 2386 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4174, 4206 |
| PstI | CTGCAG | 1 cut(s) | 376 |
| PstNI | CAGNNNCTG | 4 cut(s) | 2795, 3209, 4007, 4169 |
| PsuI | RGATCY | 4 cut(s) | 3044, 3206, 3368, 4262 |
| PsyI | GACNNNGTC | 1 cut(s) | 2959 |
| RsaI | GTAC | 3 cut(s) | 1470, 1807, 2364 |
| RsaNI | GTAC | 3 cut(s) | 1469, 1806, 2363 |
| RseI | CAYNNNNRTG | 3 cut(s) | 642, 4200, 4355 |
| SapI | GCTCTTC | 1 cut(s) | 1072 |
| SatI | GCNGC | 4 cut(s) | 422, 3654, 4076, 4287 |
| Sau96I | GGNCC | 5 cut(s) | 204, 1406, 2386, 3629, 4207 |
| SchI | GAGTC | 6 cut(s) | 668, 839, 881, 2033, 2072, 2126 |
| ScrFI | CCNGG | 4 cut(s) | 1239, 2391, 3471, 4329 |
| SduI | GDGCHC | 1 cut(s) | 2617 |
| SfcI | CTRYAG | 2 cut(s) | 372, 1381 |
| SfuI | TTCGAA | 2 cut(s) | 1541, 2483 |
| SinI | GGWCC | 5 cut(s) | 204, 1406, 2386, 3629, 4207 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 642, 4200, 4355 |
| SmlI | CTYRAG | 3 cut(s) | 1970, 2041, 2616 |
| SmoI | CTYRAG | 3 cut(s) | 1970, 2041, 2616 |
| SphI | GCATGC | 1 cut(s) | 556 |
| SsiI | CCGC | 4 cut(s) | 422, 1584, 2273, 3854 |
| SspI | AATATT | 1 cut(s) | 2806 |
| StyD4I | CCNGG | 4 cut(s) | 1237, 2389, 3469, 4327 |
| StyI | CCWWGG | 5 cut(s) | 2262, 2580, 3180, 3816, 3978 |
| TaaI | ACNGT | 5 cut(s) | 497, 1334, 1410, 1479, 1521 |
| TaiI | ACGT | 4 cut(s) | 2358, 3242, 3270, 3997 |
| TaqII | GACCGA | 1 cut(s) | 4601 |
| TatI | WGTACW | 1 cut(s) | 1805 |
| TauI | GCSGC | 1 cut(s) | 424 |
| TseFI | GTSAC | 3 cut(s) | 1863, 2902, 2961 |
| TseI | GCWGC | 3 cut(s) | 3653, 4075, 4286 |
| Tsp45I | GTSAC | 3 cut(s) | 1863, 2902, 2961 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2959 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 95, 4803 |
| VpaK11BI | GGWCC | 5 cut(s) | 204, 1406, 2386, 3629, 4207 |
| VspI | ATTAAT | 2 cut(s) | 3486, 4467 |
| XbaI | TCTAGA | 1 cut(s) | 4777 |
| XceI | RCATGY | 3 cut(s) | 66, 556, 2098 |
| XmiI | GTMKAC | 1 cut(s) | 3974 |
| XmnI | GAANNNNTTC | 1 cut(s) | 885 |
| Zsp2I | ATGCAT | 6 cut(s) | 169, 751, 2707, 2920, 3193, 3805 |