Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002241

Physical Location & Seq

Genomic Coordinates Forward (+)

8920112 .. 8921628

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10091.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGTTACAGATCACTTTTAGTCATCCATTTCTCGTGGCATTTCTGCTTTTCTTGACATTTCTGCACAGATTCTTTCCTTTTGCATTTTCTCTTTTGGTGACTGCATCCCCTGTTTTGGTCTGCTCAGTTACTCTTCTTGGGACCCTTTTGATTTTTGGCCAACCAAACTTACCCAAAACCGAAAGGGAAAAAAAGATCACTCATGATTTTGCTTCTCTTAGAACCTGGGGTTCACCAGATGAAATTGTTATTTCGGAGAGGAATGGGAGGTTGTTTAGAAACAAGTTCTCAGGAAAGAGTGTAGACGAAGTGAGTTGCAGTAGATACAGTAGTGATCCTGAATGTTCAATTGGTTATGTGCCACTTATTGATGAGACATTTCATTACACTGACAGTGAGAAGAGAGAATTAGACAGTAAGGAGTTGGAGAACCAGAGGGTCATTCATAAGGAGAAACTGGGGATTAATGGCATAACAAGGGATGTCAAAGCTATTGGGAAGCCGGCTTCCCTCAAAAGTGATCACTCGGAGTCGTCACAGGGTGGTGGTGGTGGTGATGATGAGGCTTCAGATTCTGGCTCAGACCGAGCAGAGAGTTCTTCACCAGATGCTTCAATAGCAGACATCCTTCCAATTCTTGATGAGCTACACCCACTTTTAGACTTAGATGCTCCAATACCGGTGCATATGTCCCCTGATGATTCTGGTATTGAATCTGATAGGAGTAATGATGGCAGTAACGAGTCAGATGATGAGGATACTGTAATCCGGAGTAGAGGAGTAAAAGAGTATGGGGTTGATGATAATAATGGTGATGAAGAAGAAGCATATGATGGTAAAGAAGATGAAAGCAAATCTGCAATTAAGTGGACAGAGGATGACCAAACGAATCTCAGGGACTTGGGGAATTTGGAGCTTGAAAGAAACAGATGCTTGGAGAACCTTATGACAAGGAGAAGAGCATCGCAAAGAGACGAGAAGAATCTGATAGAGTTAGATACTTCTGAAAATCCCTTTAATATTACACAAATTTCAACAACCAGACACAATCCATTTGACCTTTCACATGATGATAGGGGGTTGCCACCCATCCCTGGTTCTGCTCCGTCAACTTACTTACCAAGAAGAAACCCCTTTGATCTTCTGTATGAGCCAAATGAAGAGAATCCTGAGCTCAAGGGAGATCATGTTGAGCAAGAAAATTCGACATTTCTCCCCACTAATACAATCTTCTGTAGGCATCAAAGCTTTAGACCATCCAGAAGTGATATCCAATATATACCAAGCTTCGCATCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

434

Amino Acids

48.58

Weight (kDa)

4.69

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17910 AT5G17910 AT5G17910
fragaria_vesca	FvH4_1g29420 FvH4_1g29420 FvH4_1g29420 FvH4_2g10091 FvH4_2g10092
malus_domestica	MD05G1057800.v1.1 MD12G1015000.v1.1 MD14G1012900.v1.1
prunus_persica	Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1
pyrus_communis	pycom05g04890 pycom12g01220 pycom14g01090
rosa_chinensis	RchiOBHm_Chr3g0495491 RchiOBHm_Chr6g0267051
rosa_laevigata	RLG00000014046 RLG00000022616
rosa_multiflora	Rmu_co8285861.1_g000001 Rmu_sc0004755.1_g000026 Rmu_sc0005599.1_g000001 Rmu_sc0006163.1_g000016 Rmu_sc0013804.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390490 Rroxscaffold_7G00201200
rosa_rugosa	Rorug03G0273800 Rorug06G0028700
rosa_samantha	Rh3AG321400 Rh3BG356700 Rh3CG353500 Rh3DG356000 Rh6AG150200 Rh6BG151100 Rh6CG146500 Rh6DG135200
rosa_wichuraiana	Rw3G028090 Rw6G013020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	303
AccIII	TCCGGA	1 cut(s)	768
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	3 cut(s)	907, 1029, 1201
AcuI	CTGAAG	1 cut(s)	552
AdeI	CACNNNGTG	1 cut(s)	542
AfiI	CCNNNNNNNGG	2 cut(s)	115, 1094
AgeI	ACCGGT	1 cut(s)	679
AgsI	TTSAA	5 cut(s)	348, 615, 713, 920, 1035
AjnI	CCWGG	2 cut(s)	224, 1093
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AluBI	AGCT	6 cut(s)	491, 646, 916, 1174, 1248, 1287
AluI	AGCT	6 cut(s)	491, 646, 916, 1174, 1248, 1287
Alw21I	GWGCWC	1 cut(s)	1176
Alw26I	GTCTC	2 cut(s)	368, 966
AlwI	GGATC	1 cut(s)	329
AlwNI	CAGNNNCTG	1 cut(s)	575
Aor13HI	TCCGGA	1 cut(s)	768
AoxI	GGCC	1 cut(s)	157
ApoI	RAATTY	3 cut(s)	907, 1029, 1201
AseI	ATTAAT	1 cut(s)	465
AsiGI	ACCGGT	1 cut(s)	679
AspS9I	GGNCC	1 cut(s)	141
AsuHPI	GGTGA	5 cut(s)	109, 225, 566, 594, 824
AvaII	GGWCC	1 cut(s)	141
BaeI	ACNNNNGTAYC	2 cut(s)	316, 349
BalI	TGGCCA	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	1176
BauI	CACGAG	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	1176
BccI	CCATC	4 cut(s)	725, 827, 1097, 1264
BciT130I	CCWGG	2 cut(s)	226, 1095
BciVI	GTATCC	1 cut(s)	751
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	368, 966
BfmI	CTRYAG	1 cut(s)	1234
BfuI	GTATCC	1 cut(s)	751
Bme1390I	CCNGG	2 cut(s)	226, 1095
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	2 cut(s)	142, 143
BmrFI	CCNGG	2 cut(s)	226, 1095
BmrI	ACTGGG	1 cut(s)	467
BmsI	GCATC	6 cut(s)	113, 598, 658, 920, 971, 1249
BmuI	ACTGGG	1 cut(s)	467
Bpu10I	CCTNAGC	1 cut(s)	1170
BpuEI	CTTGAG	1 cut(s)	1160
BsaJI	CCNNGG	2 cut(s)	225, 1093
BsaWI	WCCGGW	2 cut(s)	679, 768
BsaXI	ACNNNNNCTCC	2 cut(s)	1173, 1203
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 1094
Bse118I	RCCGGY	2 cut(s)	502, 679
Bse1I	ACTGG	1 cut(s)	462
BseAI	TCCGGA	1 cut(s)	768
BseBI	CCWGG	2 cut(s)	226, 1095
BseDI	CCNNGG	2 cut(s)	225, 1093
BseGI	GGATG	7 cut(s)	22, 104, 487, 624, 883, 1089, 1256
BseLI	CCNNNNNNNGG	2 cut(s)	115, 1094
BseMII	CTCAG	5 cut(s)	138, 303, 594, 907, 1161
BseNI	ACTGG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	792
BsgI	GTGCAG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	159
BshTI	ACCGGT	1 cut(s)	679
BsiHKAI	GWGCWC	1 cut(s)	1176
BsiSI	CCGG	3 cut(s)	503, 680, 769
BslFI	GGGAC	3 cut(s)	154, 676, 911
BslI	CCNNNNNNNGG	2 cut(s)	115, 1094
BsmAI	GTCTC	2 cut(s)	368, 966
BsmBI	CGTCTC	1 cut(s)	966
BsmFI	GGGAC	3 cut(s)	154, 676, 911
BsnI	GGCC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	1176
Bsp13I	TCCGGA	1 cut(s)	768
Bsp143I	GATC	6 cut(s)	9, 195, 334, 520, 1138, 1183
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	5 cut(s)	137, 302, 593, 906, 1162
BspEI	TCCGGA	1 cut(s)	768
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	142, 143
BspPI	GGATC	1 cut(s)	329
BspQI	GCTCTTC	1 cut(s)	952
BsrFI	RCCGGY	2 cut(s)	502, 679
BsrI	ACTGG	1 cut(s)	462
BssAI	RCCGGY	2 cut(s)	502, 679
BssECI	CCNNGG	2 cut(s)	225, 1093
BssMI	GATC	6 cut(s)	9, 195, 334, 520, 1138, 1183
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	226, 1095
Bst4CI	ACNGT	4 cut(s)	329, 395, 416, 763
Bst6I	CTCTTC	4 cut(s)	138, 395, 952, 1155
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	7 cut(s)	124, 218, 289, 580, 664, 893, 1170
BstF5I	GGATG	7 cut(s)	22, 104, 487, 624, 883, 1089, 1256
BstKTI	GATC	6 cut(s)	12, 198, 337, 523, 1141, 1186
BstMAI	GTCTC	2 cut(s)	368, 966
BstMBI	GATC	6 cut(s)	9, 195, 334, 520, 1138, 1183
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNI	CCWGG	2 cut(s)	226, 1095
BstSCI	CCNGG	2 cut(s)	224, 1093
BstSFI	CTRYAG	1 cut(s)	1234
BsuI	GTATCC	1 cut(s)	751
BsuRI	GGCC	1 cut(s)	159
BtgZI	GCGATG	1 cut(s)	948
BtsCI	GGATG	7 cut(s)	22, 104, 487, 624, 883, 1089, 1256
BtsIMutI	CAGTG	2 cut(s)	387, 400
Cac8I	GCNNGC	1 cut(s)	504
CaiI	CAGNNNCTG	1 cut(s)	575
CciI	TCATGA	1 cut(s)	202
Cfr10I	RCCGGY	2 cut(s)	502, 679
Cfr13I	GGNCC	1 cut(s)	141
CspAI	ACCGGT	1 cut(s)	679
CviAII	CATG	3 cut(s)	203, 1067, 1187
DdeI	CTNAG	7 cut(s)	124, 218, 289, 580, 664, 893, 1170
DpnI	GATC	6 cut(s)	11, 197, 336, 522, 1140, 1185
DpnII	GATC	6 cut(s)	9, 195, 334, 520, 1138, 1183
DraIII	CACNNNGTG	1 cut(s)	542
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	4 cut(s)	138, 395, 952, 1155
EarI	CTCTTC	4 cut(s)	138, 395, 952, 1155
Ecl136II	GAGCTC	1 cut(s)	1174
Eco24I	GRGCYC	1 cut(s)	1176
Eco32I	GATATC	1 cut(s)	1270
Eco47I	GGWCC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	1174
Eco57I	CTGAAG	1 cut(s)	552
EcoICRI	GAGCTC	1 cut(s)	1174
EcoO109I	RGGNCCY	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	224, 1093
EcoRV	GATATC	1 cut(s)	1270
EcoT38I	GRGCYC	1 cut(s)	1176
Esp3I	CGTCTC	1 cut(s)	966
FaeI	CATG	3 cut(s)	206, 1070, 1190
FaqI	GGGAC	3 cut(s)	154, 676, 911
FatI	CATG	3 cut(s)	202, 1066, 1186
FauNDI	CATATG	2 cut(s)	687, 829
FbaI	TGATCA	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	303
FokI	GGATG	7 cut(s)	9, 91, 494, 611, 890, 1076, 1243
FriOI	GRGCYC	1 cut(s)	1176
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	3 cut(s)	503, 680, 769
Hin1II	CATG	3 cut(s)	206, 1070, 1190
HincII	GTYRAC	1 cut(s)	1110
HindII	GTYRAC	1 cut(s)	1110
HindIII	AAGCTT	2 cut(s)	1246, 1285
HinfI	GANTC	9 cut(s)	69, 530, 572, 701, 713, 743, 889, 982, 1165
HpaII	CCGG	3 cut(s)	503, 680, 769
HphI	GGTGA	5 cut(s)	109, 225, 566, 594, 824
Hpy166II	GTNNAC	4 cut(s)	233, 304, 870, 1110
Hpy188I	TCNGA	8 cut(s)	256, 529, 571, 583, 718, 748, 987, 1006
Hpy188III	TCNNGA	8 cut(s)	52, 203, 291, 338, 638, 769, 1169, 1260
Hpy8I	GTNNAC	4 cut(s)	233, 304, 870, 1110
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	4 cut(s)	329, 395, 416, 763
HpyCH4V	TGCA	6 cut(s)	64, 83, 104, 318, 685, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	7 cut(s)	124, 218, 289, 580, 664, 893, 1170
Hsp92II	CATG	3 cut(s)	206, 1070, 1190
KflI	GGGWCCC	1 cut(s)	141
Kpn2I	TCCGGA	1 cut(s)	768
KroI	GCCGGC	1 cut(s)	502
KroNI	GCCGGC	1 cut(s)	504
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	6 cut(s)	9, 195, 334, 520, 1138, 1183
LguI	GCTCTTC	1 cut(s)	952
LmnI	GCTCC	3 cut(s)	676, 913, 1108
LweI	GCATC	6 cut(s)	113, 598, 658, 920, 971, 1249
MaeIII	GTNAC	5 cut(s)	3, 97, 127, 534, 737
MalI	GATC	6 cut(s)	11, 197, 336, 522, 1140, 1185
MboI	GATC	6 cut(s)	9, 195, 334, 520, 1138, 1183
MfeI	CAATTG	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	1176
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	8 cut(s)	243, 348, 407, 633, 861, 907, 1029, 1201
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	2 cut(s)	539, 752
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	8 cut(s)	252, 261, 429, 521, 556, 748, 770, 868
Mox20I	TGGCCA	1 cut(s)	159
MroI	TCCGGA	1 cut(s)	768
MroNI	GCCGGC	1 cut(s)	502
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	4 cut(s)	465, 864, 1017, 1300
Msp20I	TGGCCA	1 cut(s)	159
MspI	CCGG	3 cut(s)	503, 680, 769
MspR9I	CCNGG	2 cut(s)	226, 1095
MunI	CAATTG	1 cut(s)	348
MvaI	CCWGG	2 cut(s)	226, 1095
MwoI	GCNNNNNNNGC	1 cut(s)	617
NaeI	GCCGGC	1 cut(s)	504
NdeI	CATATG	2 cut(s)	687, 829
NdeII	GATC	6 cut(s)	9, 195, 334, 520, 1138, 1183
NgoMIV	GCCGGC	1 cut(s)	502
NlaIII	CATG	3 cut(s)	206, 1070, 1190
NlaIV	GGNNCC	2 cut(s)	142, 143
NmuCI	GTSAC	2 cut(s)	97, 534
PagI	TCATGA	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	952
PdiI	GCCGGC	1 cut(s)	504
PfeI	GAWTC	7 cut(s)	69, 572, 701, 713, 889, 982, 1165
PinAI	ACCGGT	1 cut(s)	679
PleI	GAGTC	2 cut(s)	538, 751
PpsI	GAGTC	2 cut(s)	538, 751
PpuMI	RGGWCCY	1 cut(s)	141
PshBI	ATTAAT	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	1176
Psp5II	RGGWCCY	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	224, 1093
PspGI	CCWGG	2 cut(s)	224, 1093
PspN4I	GGNNCC	2 cut(s)	142, 143
PspPI	GGNCC	1 cut(s)	141
PspPPI	RGGWCCY	1 cut(s)	141
PstNI	CAGNNNCTG	1 cut(s)	575
SacI	GAGCTC	1 cut(s)	1176
SapI	GCTCTTC	1 cut(s)	952
SaqAI	TTAA	4 cut(s)	465, 864, 1017, 1300
Sau3AI	GATC	6 cut(s)	9, 195, 334, 520, 1138, 1183
Sau96I	GGNCC	1 cut(s)	141
SchI	GAGTC	2 cut(s)	539, 752
ScrFI	CCNGG	2 cut(s)	226, 1095
SduI	GDGCHC	1 cut(s)	1176
SfaNI	GCATC	6 cut(s)	113, 598, 658, 920, 971, 1249
SfcI	CTRYAG	1 cut(s)	1234
SinI	GGWCC	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	1175
SmoI	CTYRAG	1 cut(s)	1175
Sse9I	AATT	8 cut(s)	243, 348, 407, 633, 861, 907, 1029, 1201
SspI	AATATT	1 cut(s)	1021
SstI	GAGCTC	1 cut(s)	1176
StyD4I	CCNGG	2 cut(s)	224, 1093
TaaI	ACNGT	4 cut(s)	329, 395, 416, 763
TaqI	TCGA	1 cut(s)	1205
TaqII	GACCGA	1 cut(s)	600
TasI	AATT	8 cut(s)	243, 348, 407, 633, 861, 907, 1029, 1201
TfiI	GAWTC	7 cut(s)	69, 572, 701, 713, 889, 982, 1165
Tru1I	TTAA	4 cut(s)	465, 864, 1017, 1300
Tru9I	TTAA	4 cut(s)	465, 864, 1017, 1300
TscAI	CASTG	2 cut(s)	394, 400
TseFI	GTSAC	2 cut(s)	97, 534
Tsp45I	GTSAC	2 cut(s)	97, 534
TspDTI	ATGAA	6 cut(s)	255, 371, 434, 831, 861, 1173
TspGWI	ACGGA	1 cut(s)	1095
TspRI	CASTG	2 cut(s)	394, 400
VpaK11BI	GGWCC	1 cut(s)	141
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	3 cut(s)	907, 1029, 1201
XmiI	GTMKAC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.