Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8285861.1

Orthogroup ID

OG0002241

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 859

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8285861.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

aatgatgtggaagcagttgagcagcagtatactttgcttcaaaaggttcgagatcagattctccaagtgcacgatgataatgtgtctccccgaggaggaggagaacacttggattcctttctgggtggctacggtcatgatgacagtggtgatgcttctgattccgggtcggatggggctgagagctcgtcgccagatgcttcaatggctgacatccttccaattcttgatgagctacacccgcttttagactcagaagctccacagcctgctcgtatgttgcatgatggatctgatgcagcttcagatagtagtgttgagtcggaccagggtggacaagtagatgaggatgatggggttgattacaatggcggagatgaggaagaagtaccggcacacggtggcacagatgatgaaagcaaatctgcaattaagtggacagatgatgaccaaaagaatctcatggatttgggaaatttggagcttgaaaggaaccaacgcttggagagtcttattgcaaggagaagggcaagaaaaagcttcaaattaacggctgagaagaatctaatagattttgatggtgttgatcttccctttaatgtttcaccaatttcaacaacaaggcgcaacccattcgattctccatttgatgactcctatggcaacatgcccatccctggttctgctccatccattatgttggcaaggagaaatccttttgatcttccttatgactccaatgaagaaaaacctgacctcaagggagaccatttcgagcaagagtttattgcatcgcatgccaacgatgcattcttccgtaggcatgaaagcttcagtttgggagcttcaagcttgggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

31.27

Weight (kDa)

4.26

Isoelectric Point (pI)

56.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17910 AT5G17910 AT5G17910
fragaria_vesca	FvH4_1g29420 FvH4_1g29420 FvH4_1g29420 FvH4_2g10091 FvH4_2g10092
malus_domestica	MD05G1057800.v1.1 MD12G1015000.v1.1 MD14G1012900.v1.1
prunus_persica	Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.7G025700_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1 Prupe.8G087600_v2.0.a1
pyrus_communis	pycom05g04890 pycom12g01220 pycom14g01090
rosa_chinensis	RchiOBHm_Chr3g0495491 RchiOBHm_Chr6g0267051
rosa_laevigata	RLG00000014046 RLG00000022616
rosa_multiflora	Rmu_co8285861.1_g000001 Rmu_sc0004755.1_g000026 Rmu_sc0005599.1_g000001 Rmu_sc0006163.1_g000016 Rmu_sc0013804.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390490 Rroxscaffold_7G00201200
rosa_rugosa	Rorug03G0273800 Rorug06G0028700
rosa_samantha	Rh3AG321400 Rh3BG356700 Rh3CG353500 Rh3DG356000 Rh6AG150200 Rh6BG151100 Rh6CG146500 Rh6DG135200
rosa_wichuraiana	Rw3G028090 Rw6G013020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	502
AccI	GTMKAC	1 cut(s)	29
AciI	CCGC	2 cut(s)	242, 372
AclWI	GGATC	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	475
AcuI	CTGAAG	2 cut(s)	288, 817
AdeI	CACNNNGTG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	4 cut(s)	95, 398, 502, 677
AgsI	TTSAA	6 cut(s)	41, 204, 488, 544, 615, 849
AjnI	CCWGG	2 cut(s)	327, 676
AjuI	GAANNNNNNNTTGG	4 cut(s)	485, 517, 794, 826
AluBI	AGCT	9 cut(s)	186, 235, 260, 302, 484, 540, 831, 845, 852
AluI	AGCT	9 cut(s)	186, 235, 260, 302, 484, 540, 831, 845, 852
Alw21I	GWGCWC	2 cut(s)	72, 188
Alw26I	GTCTC	2 cut(s)	90, 759
Alw44I	GTGCAC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	298
Ama87I	CYCGRG	1 cut(s)	90
ApaLI	GTGCAC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	22, 299
ApoI	RAATTY	1 cut(s)	475
AspLEI	GCGC	1 cut(s)	627
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	161, 597
AvaI	CYCGRG	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	188
Bbv12I	GWGCWC	2 cut(s)	72, 188
BbvI	GCAGC	2 cut(s)	34, 311
BccI	CCATC	6 cut(s)	167, 281, 347, 572, 680, 697
BceAI	ACGGC	1 cut(s)	567
BcgI	CGANNNNNNTGC	2 cut(s)	616, 650
BciT130I	CCWGG	2 cut(s)	329, 678
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	90, 759
BisI	GCNGC	2 cut(s)	23, 300
BlsI	GCNGC	2 cut(s)	24, 301
Bme1390I	CCNGG	3 cut(s)	166, 329, 678
Bme18I	GGWCC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	494
BmrFI	CCNGG	3 cut(s)	166, 329, 678
BmsI	GCATC	5 cut(s)	142, 187, 286, 796, 800
BpuEI	CTTGAG	1 cut(s)	743
BpuMI	CCSGG	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	759
BsaJI	CCNNGG	3 cut(s)	91, 328, 676
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 398, 502, 677
Bse118I	RCCGGY	1 cut(s)	391
BseBI	CCWGG	2 cut(s)	329, 678
BseDI	CCNNGG	3 cut(s)	91, 328, 676
BseGI	GGATG	5 cut(s)	178, 213, 355, 672, 689
BseLI	CCNNNNNNNGG	4 cut(s)	95, 398, 502, 677
BseMII	CTCAG	3 cut(s)	171, 267, 546
BseRI	GAGGAG	3 cut(s)	108, 111, 114
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	34, 311
BsiHKAI	GWGCWC	2 cut(s)	72, 188
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	165, 392
BslI	CCNNNNNNNGG	4 cut(s)	95, 398, 502, 677
BsmAI	GTCTC	2 cut(s)	90, 759
BsmI	GAATGC	1 cut(s)	809
Bso31I	GGTCTC	1 cut(s)	759
BsoBI	CYCGRG	1 cut(s)	90
Bsp1286I	GDGCHC	2 cut(s)	72, 188
Bsp143I	GATC	4 cut(s)	52, 290, 586, 721
BspACI	CCGC	2 cut(s)	242, 372
BspCNI	CTCAG	3 cut(s)	172, 266, 547
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	494
BspPI	GGATC	1 cut(s)	298
BspTNI	GGTCTC	1 cut(s)	759
BsrFI	RCCGGY	1 cut(s)	391
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	3 cut(s)	91, 328, 676
BssMI	GATC	4 cut(s)	52, 290, 586, 721
BssNAI	GTATAC	1 cut(s)	30
Bst1107I	GTATAC	1 cut(s)	30
Bst2UI	CCWGG	2 cut(s)	329, 678
Bst4CI	ACNGT	3 cut(s)	134, 146, 401
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstC8I	GCNNGC	2 cut(s)	270, 798
BstDEI	CTNAG	3 cut(s)	180, 253, 555
BstF5I	GGATG	5 cut(s)	178, 213, 355, 672, 689
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	4 cut(s)	55, 293, 589, 724
BstMAI	GTCTC	2 cut(s)	90, 759
BstMBI	GATC	4 cut(s)	52, 290, 586, 721
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 241, 797, 806
BstNI	CCWGG	2 cut(s)	329, 678
BstNSI	RCATGY	2 cut(s)	670, 800
BstSCI	CCNGG	3 cut(s)	164, 327, 676
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	34, 311
BstX2I	RGATCY	1 cut(s)	290
BstXI	CCANNNNNNTGG	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	290
BstZ17I	GTATAC	1 cut(s)	30
BtgZI	GCGATG	1 cut(s)	777
BtsCI	GGATG	5 cut(s)	178, 213, 355, 672, 689
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	270, 798
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	627
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	6 cut(s)	137, 284, 463, 667, 797, 824
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	3 cut(s)	180, 253, 555
DpnI	GATC	4 cut(s)	54, 292, 588, 723
DpnII	GATC	4 cut(s)	52, 290, 586, 721
DraIII	CACNNNGTG	1 cut(s)	401
EciI	GGCGGA	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	759
Eco47I	GGWCC	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	2 cut(s)	288, 817
Eco88I	CYCGRG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	327, 676
EcoT22I	ATGCAT	1 cut(s)	811
EcoT38I	GRGCYC	1 cut(s)	188
FaeI	CATG	6 cut(s)	140, 287, 466, 670, 800, 827
FatI	CATG	6 cut(s)	136, 283, 462, 666, 796, 823
FauI	CCCGC	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	2 cut(s)	23, 300
FokI	GGATG	5 cut(s)	185, 200, 362, 659, 676
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	23, 300
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	2 cut(s)	23, 300
HapII	CCGG	2 cut(s)	165, 392
HhaI	GCGC	1 cut(s)	627
Hin1II	CATG	6 cut(s)	140, 287, 466, 670, 800, 827
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HindIII	AAGCTT	3 cut(s)	538, 829, 850
HpaII	CCGG	2 cut(s)	165, 392
HphI	GGTGA	2 cut(s)	161, 597
Hpy166II	GTNNAC	4 cut(s)	30, 70, 335, 438
Hpy188I	TCNGA	7 cut(s)	57, 160, 172, 256, 295, 307, 325
Hpy188III	TCNNGA	3 cut(s)	50, 137, 227
Hpy8I	GTNNAC	4 cut(s)	30, 70, 335, 438
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	227, 519
HpyCH4III	ACNGT	3 cut(s)	134, 146, 401
HpyCH4V	TGCA	7 cut(s)	70, 283, 299, 428, 518, 791, 809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 241, 797, 806
HpyF3I	CTNAG	3 cut(s)	180, 253, 555
Hsp92II	CATG	6 cut(s)	140, 287, 466, 670, 800, 827
HspAI	GCGC	1 cut(s)	625
Kzo9I	GATC	4 cut(s)	52, 290, 586, 721
LmnI	GCTCC	4 cut(s)	265, 481, 691, 842
Lsp1109I	GCAGC	2 cut(s)	34, 311
LweI	GCATC	5 cut(s)	142, 187, 286, 796, 800
MalI	GATC	4 cut(s)	54, 292, 588, 723
MboI	GATC	4 cut(s)	52, 290, 586, 721
MboII	GAAGA	6 cut(s)	395, 571, 581, 716, 755, 805
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	2 cut(s)	72, 188
MluCI	AATT	5 cut(s)	222, 429, 475, 545, 609
MlyI	GAGTC	5 cut(s)	245, 329, 517, 647, 728
MmeI	TCCRAC	2 cut(s)	150, 303
MnlI	CCTC	6 cut(s)	86, 89, 92, 340, 373, 767
Mph1103I	ATGCAT	1 cut(s)	811
MseI	TTAA	3 cut(s)	432, 548, 597
MspI	CCGG	2 cut(s)	165, 392
MspR9I	CCNGG	3 cut(s)	166, 329, 678
Mva1269I	GAATGC	1 cut(s)	809
MvaI	CCWGG	2 cut(s)	329, 678
MwoI	GCNNNNNNNGC	4 cut(s)	206, 241, 797, 806
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	4 cut(s)	52, 290, 586, 721
NlaIII	CATG	6 cut(s)	140, 287, 466, 670, 800, 827
NlaIV	GGNNCC	1 cut(s)	494
NsiI	ATGCAT	1 cut(s)	811
NspI	RCATGY	2 cut(s)	670, 800
PaeI	GCATGC	1 cut(s)	800
PagI	TCATGA	1 cut(s)	136
PctI	GAATGC	1 cut(s)	809
PfeI	GAWTC	6 cut(s)	58, 113, 161, 457, 562, 638
PflMI	CCANNNNNTGG	1 cut(s)	502
PkrI	GCNGC	2 cut(s)	24, 301
PleI	GAGTC	5 cut(s)	245, 328, 516, 647, 728
PpsI	GAGTC	5 cut(s)	245, 328, 516, 647, 728
Psp124BI	GAGCTC	1 cut(s)	188
Psp6I	CCWGG	2 cut(s)	327, 676
PspGI	CCWGG	2 cut(s)	327, 676
PspN4I	GGNNCC	1 cut(s)	494
PspPI	GGNCC	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	290
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SacI	GAGCTC	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	432, 548, 597
SatI	GCNGC	2 cut(s)	23, 300
Sau3AI	GATC	4 cut(s)	52, 290, 586, 721
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	5 cut(s)	245, 329, 517, 647, 728
ScrFI	CCNGG	3 cut(s)	166, 329, 678
SduI	GDGCHC	2 cut(s)	72, 188
SfaNI	GCATC	5 cut(s)	142, 187, 286, 796, 800
SinI	GGWCC	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
SphI	GCATGC	1 cut(s)	800
Sse9I	AATT	5 cut(s)	222, 429, 475, 545, 609
SsiI	CCGC	2 cut(s)	242, 372
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	3 cut(s)	164, 327, 676
TaaI	ACNGT	3 cut(s)	134, 146, 401
TaqI	TCGA	3 cut(s)	49, 636, 774
TasI	AATT	5 cut(s)	222, 429, 475, 545, 609
TfiI	GAWTC	6 cut(s)	58, 113, 161, 457, 562, 638
Tru1I	TTAA	3 cut(s)	432, 548, 597
Tru9I	TTAA	3 cut(s)	432, 548, 597
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	2 cut(s)	22, 299
TspDTI	ATGAA	3 cut(s)	429, 756, 840
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	1 cut(s)	151
Van91I	CCANNNNNTGG	1 cut(s)	502
VneI	GTGCAC	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	475
XceI	RCATGY	2 cut(s)	670, 800
XmiI	GTMKAC	1 cut(s)	29
Zsp2I	ATGCAT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.