Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003210

Physical Location & Seq

Genomic Coordinates Reverse (-)

2912881 .. 2914554

Gene Structure 1674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAATGTGTTGGCCTCAGAATGCAGTAGTGGTTGTGAGTCTGGTTGGACTCTATACTTAGAGCAATCTTTTCTTTCTCAACATCCGAGTAATGGTTTTTGTGAGGAGTTTAAGGAAAAAAGAATTAGCTATAGTAATGAGGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGACCAGTCAATGGTTTCTGATGCTTCTTCTGGGCCTCCTCATTTCAATGAAGATGAGGTTTACTTTGATGAAAACAATAATGGGAGCTTTTATCCTCCATCCAAAGATGTTCCAACATTGAAGTTTGGAGGAAAAAAGCAGAAGATCAAAGAAAAGGGTAGATGTGGTGGTCAAGATCAACAGCAACAGCAACCATCTTTTCTAGATGACACTGCTAGCTCCCCGTTCTTCAACATTTCCAAGAACAATTTCATGGTGTCCAGTAATCAAGGTTCAGGTGATAGTGTCCTGGATTTCTCACAAGGTTTCTCATCAACTCATTTTCAGGGGAGATCTGCATACCAAGACCATTATGGTTTCTTCCAACCTACTCTACCTGAGAATCAACTTCAGGATCAAAACCAGTGGTTTGAAGGGAATGAGATAACAAGATCTTCATATCATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.42

Weight (kDa)

4.36

Isoelectric Point (pI)

72.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33800 AT4G33800
fragaria_vesca	FvH4_2g03590 FvH4_2g03590 FvH4_2g32900 FvH4_2g32900
malus_domestica	MD05G1102500.v1.1 MD08G1080400.v1.1 MD10G1108100.v1.1 MD15G1067500.v1.1
prunus_persica	Prupe.1G421400_v2.0.a1 Prupe.1G421400_v2.0.a1 Prupe.8G147000_v2.0.a1
pyrus_communis	pycom08g06640 pycom10g09340 pycom15g06400
rosa_chinensis	RchiOBHm_Chr6g0252561 RchiOBHm_Chr6g0309821
rosa_laevigata	RLG00000010533 RLG00000015088
rosa_multiflora	Rmu_sc0002016.1_g000030 Rmu_ssc0000373.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159150 Rroxscaffold_7G00212580
rosa_rugosa	Rorug05G0536900 Rorug06G0375000 Rorug06G0375100
rosa_samantha	Rh6AG053300 Rh6AG488400 Rh6BG047100 Rh6BG498000 Rh6CG045800 Rh6CG502800 Rh6DG041500 Rh6DG488900
rosa_wichuraiana	Rw6G004780 Rw6G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	181
AclWI	GGATC	1 cut(s)	573
AcuI	CTGAAG	1 cut(s)	545
AfiI	CCNNNNNNNGG	2 cut(s)	92, 181
AgsI	TTSAA	4 cut(s)	217, 292, 403, 584
AjnI	CCWGG	1 cut(s)	459
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	3 cut(s)	129, 258, 390
AluI	AGCT	3 cut(s)	129, 258, 390
AlwI	GGATC	1 cut(s)	573
AoxI	GGCC	2 cut(s)	12, 203
Asp700I	GAANNNNTTC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	461
AsuNHI	GCTAGC	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	177
BccI	CCATC	2 cut(s)	277, 373
BciT130I	CCWGG	1 cut(s)	461
BfaI	CTAG	2 cut(s)	374, 387
BfmI	CTRYAG	1 cut(s)	130
BglII	AGATCT	2 cut(s)	503, 602
Bme1390I	CCNGG	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	1 cut(s)	181
BmtI	GCTAGC	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 181
Bse1I	ACTGG	3 cut(s)	175, 432, 574
BseBI	CCWGG	1 cut(s)	461
BseGI	GGATG	3 cut(s)	82, 148, 269
BseLI	CCNNNNNNNGG	2 cut(s)	92, 181
BseMII	CTCAG	2 cut(s)	30, 540
BseNI	ACTGG	3 cut(s)	175, 432, 574
BseRI	GAGGAG	2 cut(s)	119, 198
BshFI	GGCC	2 cut(s)	14, 205
BslI	CCNNNNNNNGG	2 cut(s)	92, 181
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	14, 205
Bsp143I	GATC	5 cut(s)	315, 346, 503, 565, 602
BspANI	GGCC	2 cut(s)	14, 205
BspCNI	CTCAG	2 cut(s)	29, 541
BspOI	GCTAGC	1 cut(s)	390
BspPI	GGATC	1 cut(s)	573
BsrI	ACTGG	3 cut(s)	175, 432, 574
BssMI	GATC	5 cut(s)	315, 346, 503, 565, 602
Bst2UI	CCWGG	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	3 cut(s)	16, 58, 549
BstF5I	GGATG	3 cut(s)	82, 148, 269
BstKTI	GATC	5 cut(s)	318, 349, 506, 568, 605
BstMBI	GATC	5 cut(s)	315, 346, 503, 565, 602
BstNI	CCWGG	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	2 cut(s)	503, 602
BstYI	RGATCY	2 cut(s)	503, 602
BsuRI	GGCC	2 cut(s)	14, 205
BtsCI	GGATG	3 cut(s)	82, 148, 269
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	381, 581
Cac8I	GCNNGC	1 cut(s)	388
Cfr13I	GGNCC	1 cut(s)	203
CspCI	CAANNNNNGTGG	2 cut(s)	557, 592
CviAII	CATG	1 cut(s)	424
CviJI	RGCY	5 cut(s)	14, 129, 205, 258, 390
CviKI_1	RGCY	5 cut(s)	14, 129, 205, 258, 390
DdeI	CTNAG	3 cut(s)	16, 58, 549
DpnI	GATC	5 cut(s)	317, 348, 505, 567, 604
DpnII	GATC	5 cut(s)	315, 346, 503, 565, 602
Eco57I	CTGAAG	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	459
FaeI	CATG	1 cut(s)	427
FaiI	YATR	6 cut(s)	55, 132, 425, 511, 525, 610
FatI	CATG	1 cut(s)	423
FokI	GGATG	3 cut(s)	69, 155, 256
FspBI	CTAG	2 cut(s)	374, 387
HaeIII	GGCC	2 cut(s)	14, 205
Hin1II	CATG	1 cut(s)	427
HinfI	GANTC	3 cut(s)	38, 49, 553
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	19, 87, 190
Hpy188III	TCNNGA	3 cut(s)	344, 374, 563
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	578
HpyCH4V	TGCA	2 cut(s)	24, 509
HpyF3I	CTNAG	3 cut(s)	16, 58, 549
Hsp92II	CATG	1 cut(s)	427
Kzo9I	GATC	5 cut(s)	315, 346, 503, 565, 602
LmnI	GCTCC	2 cut(s)	255, 395
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	374, 387
MalI	GATC	5 cut(s)	317, 348, 505, 567, 604
MboI	GATC	5 cut(s)	315, 346, 503, 565, 602
MflI	RGATCY	2 cut(s)	503, 602
MluCI	AATT	2 cut(s)	123, 418
MlyI	GAGTC	2 cut(s)	43, 47
MmeI	TCCRAC	3 cut(s)	26, 308, 559
MnlI	CCTC	8 cut(s)	25, 97, 133, 216, 219, 220, 276, 293
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	461
NdeII	GATC	5 cut(s)	315, 346, 503, 565, 602
NheI	GCTAGC	1 cut(s)	386
NlaIII	CATG	1 cut(s)	427
PctI	GAATGC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	553
PflMI	CCANNNNNTGG	1 cut(s)	181
PfoI	TCCNGGA	1 cut(s)	459
PleI	GAGTC	2 cut(s)	43, 46
PpsI	GAGTC	2 cut(s)	43, 46
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspPI	GGNCC	1 cut(s)	203
PsrI	GAACNNNNNNTAC	2 cut(s)	427, 459
PsuI	RGATCY	2 cut(s)	503, 602
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	111
Sau3AI	GATC	5 cut(s)	315, 346, 503, 565, 602
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	2 cut(s)	43, 47
ScrFI	CCNGG	1 cut(s)	461
SetI	ASST	9 cut(s)	131, 231, 260, 392, 445, 451, 478, 541, 550
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	123, 418
SspMI	CTAG	2 cut(s)	374, 387
StyD4I	CCNGG	1 cut(s)	459
TasI	AATT	2 cut(s)	123, 418
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	2 cut(s)	388, 581
TspDTI	ATGAA	6 cut(s)	17, 159, 234, 255, 412, 597
TspRI	CASTG	2 cut(s)	388, 581
Van91I	CCANNNNNTGG	1 cut(s)	181
XbaI	TCTAGA	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	2 cut(s)	374, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.