FvH4_2g32900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003210
Physical Location & Seq
Reverse (-)
24820176 .. 24821651
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32900.t1

Sequence Viewer

Length: 450 bp
ATGAACATATCACAATCACAGTACAATAGTGGGTGTGAATCTGGGTGGACGCATTACCTAGATCAGTCATATCTTTCCGGCAGCCATGGAATTCAGAAAGGTGATGATTATGTAGGAACAAAACCAGAATTTGAAGAGGAAGAAAGGGAGGAAGATCTATCTATGGTGTCTGATGCTTCTTCTGGACCTCCACATTACCAAGAATTATATGAAGATGGGTGTTCGTTATCGGTTGATTCTTCGGCTTCCAAATCAGGCAAGAAAAGCAAGAAGAAGAAGAGCAAAGAAAGTAGAGGCAAAGAACAACACCACCATCTTGATGACACCGCTAGCTCCTCAGTCTTCAACTACTATTCCAAGAAAAAGATGAGTACTATTTCCATGGATGAACCTCCAATGCAGAATGTGATGGACTATTCTGAGGGTTTCTCTGCAACACATATGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.72

Weight (kDa)

5.31

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 327
AcsI RAATTY 2 cut(s) 90, 128
AfaI GTAC 2 cut(s) 23, 373
AgsI TTSAA 2 cut(s) 134, 346
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
ApeKI GCWGC 1 cut(s) 81
ApoI RAATTY 2 cut(s) 90, 128
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 113
AsuNHI GCTAGC 1 cut(s) 329
AvaII GGWCC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 93
BccI CCATC 3 cut(s) 209, 321, 403
BfaI CTAG 2 cut(s) 59, 330
BglII AGATCT 1 cut(s) 154
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
BmcAI AGTACT 1 cut(s) 373
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmsI GCATC 1 cut(s) 163
BmtI GCTAGC 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 334
BplI GAGNNNNNCTC 2 cut(s) 413, 445
BsaJI CCNNGG 2 cut(s) 85, 381
BseDI CCNNGG 2 cut(s) 85, 381
BseGI GGATG 1 cut(s) 391
BseMII CTCAG 2 cut(s) 351, 411
BseRI GAGGAG 1 cut(s) 325
BseXI GCAGC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 78
Bsp143I GATC 2 cut(s) 61, 154
Bsp19I CCATGG 2 cut(s) 85, 381
BspACI CCGC 1 cut(s) 327
BspCNI CTCAG 2 cut(s) 350, 412
BspOI GCTAGC 1 cut(s) 333
BspQI GCTCTTC 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 85, 381
BssMI GATC 2 cut(s) 61, 154
BssT1I CCWWGG 2 cut(s) 85, 381
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 2 cut(s) 129, 272
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 2 cut(s) 337, 420
BstDSI CCRYGG 2 cut(s) 85, 381
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 2 cut(s) 64, 157
BstMBI GATC 2 cut(s) 61, 154
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BtgI CCRYGG 2 cut(s) 85, 381
BtsCI GGATG 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 22, 372
CviAII CATG 2 cut(s) 86, 382
CviJI RGCY 3 cut(s) 84, 245, 333
CviKI_1 RGCY 3 cut(s) 84, 245, 333
CviQI GTAC 2 cut(s) 22, 372
DdeI CTNAG 2 cut(s) 337, 420
DpnI GATC 2 cut(s) 63, 156
DpnII GATC 2 cut(s) 61, 154
Eam1104I CTCTTC 2 cut(s) 129, 272
EarI CTCTTC 2 cut(s) 129, 272
Eco130I CCWWGG 2 cut(s) 85, 381
Eco47I GGWCC 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 90
EcoT14I CCWWGG 2 cut(s) 85, 381
ErhI CCWWGG 2 cut(s) 85, 381
FaeI CATG 2 cut(s) 89, 385
FatI CATG 2 cut(s) 85, 381
FauNDI CATATG 1 cut(s) 441
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 1 cut(s) 82
FspBI CTAG 2 cut(s) 59, 330
GluI GCNGC 1 cut(s) 82
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 58
Hin1II CATG 2 cut(s) 89, 385
HinfI GANTC 2 cut(s) 38, 236
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 3 cut(s) 96, 172, 421
Hpy188III TCNNGA 2 cut(s) 183, 317
Hpy8I GTNNAC 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 400, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 2 cut(s) 337, 420
Hsp92II CATG 2 cut(s) 89, 385
Kzo9I GATC 2 cut(s) 61, 154
LguI GCTCTTC 1 cut(s) 272
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 5 cut(s) 27, 91, 138, 168, 240
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 1 cut(s) 163
MaeI CTAG 2 cut(s) 59, 330
MalI GATC 2 cut(s) 63, 156
MboI GATC 2 cut(s) 61, 154
MflI RGATCY 1 cut(s) 154
MluCI AATT 3 cut(s) 90, 128, 203
MnlI CCTC 7 cut(s) 130, 142, 198, 287, 346, 402, 415
MslI CAYNNNNRTG 1 cut(s) 318
MspI CCGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 264
NcoI CCATGG 2 cut(s) 85, 381
NdeI CATATG 1 cut(s) 441
NdeII GATC 2 cut(s) 61, 154
NheI GCTAGC 1 cut(s) 329
NlaIII CATG 2 cut(s) 89, 385
PciSI GCTCTTC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 38, 236
PkrI GCNGC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 185
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 2 cut(s) 23, 373
RsaNI GTAC 2 cut(s) 22, 372
RseI CAYNNNNRTG 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 272
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 2 cut(s) 61, 154
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 1 cut(s) 373
SetI ASST 5 cut(s) 60, 103, 190, 335, 394
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 318
Sse9I AATT 3 cut(s) 90, 128, 203
SsiI CCGC 1 cut(s) 327
SspMI CTAG 2 cut(s) 59, 330
StyI CCWWGG 2 cut(s) 85, 381
TaaI ACNGT 1 cut(s) 21
TasI AATT 3 cut(s) 90, 128, 203
TatI WGTACW 2 cut(s) 21, 371
TfiI GAWTC 2 cut(s) 38, 236
TseI GCWGC 1 cut(s) 81
TspDTI ATGAA 3 cut(s) 17, 225, 402
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 2 cut(s) 90, 128
XspI CTAG 2 cut(s) 59, 330
ZrmI AGTACT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.