Rh6BG047100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
7775352 .. 7777284
1933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG047100.1

Sequence Viewer

Length: 612 bp
ATGAATGTGTTGGCCTCGGAATGCAGTAGTGGTTGTGAGTCCGGTTGGACTCTGTACTTAGAGCAATCTTTTGTTTCTCAACATCCGAGTGGTTCACATAGAGGTAATTGTAATGGTTTTTGTGAGGAGTATAAGGAAAAAAGAATTAGCTATAGTAATAAGGATGAAGAAGAAGAAGAAGACCAGTCAATGGTTTCTGATGCTTCTTCTGGGCCTCCTCATTTCAATGAAGATGAGGTTTACTTTGATGAAAACAATAATGGGTATTTTTGTCCTCCATCCAAAGATGTTAGAACATTGAAGTTTGGAGGTAAAAAGCAGAAGATCAAAGAAAAGGGTAGATGTGGTGTTCAAGATCAACAGCAACAGCAACCATCTTTTCTAGATGACACTGCTAGCTCCCCTTTTTTCAACATTTCCAAGAACAATTTGATGGTGTCCAATAATCAGGCTTCAGGTGATAGTGTCCTGGATTTCTCACAAGGTTTCTCATCAACTCATTTTCAGGGGAGATCTGCATACCAAGACCACTATGGTTTCTTACAATCTACTCTACCTGGAAATCCACTTCAGGATCAAAACCAGTTGAGTACTCATTTTTTATTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.82

Weight (kDa)

4.82

Isoelectric Point (pI)

60.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 610
AccB7I CCANNNNNTGG 1 cut(s) 190
AclWI GGATC 1 cut(s) 582
AcuI CTGAAG 2 cut(s) 438, 554
AfaI GTAC 2 cut(s) 56, 592
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 4 cut(s) 226, 301, 353, 412
AjnI CCWGG 2 cut(s) 468, 556
AluBI AGCT 2 cut(s) 150, 399
AluI AGCT 2 cut(s) 150, 399
AlwI GGATC 1 cut(s) 582
AoxI GGCC 2 cut(s) 12, 212
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 470
AsuNHI GCTAGC 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 186
BccI CCATC 3 cut(s) 286, 382, 427
BciT130I CCWGG 2 cut(s) 470, 558
BfaI CTAG 2 cut(s) 383, 396
BfmI CTRYAG 1 cut(s) 151
BglII AGATCT 1 cut(s) 512
BmcAI AGTACT 1 cut(s) 592
Bme1390I CCNGG 2 cut(s) 470, 558
BmgT120I GGNCC 1 cut(s) 212
BmrFI CCNGG 2 cut(s) 470, 558
BmsI GCATC 1 cut(s) 190
BmtI GCTAGC 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 2 cut(s) 184, 583
BseBI CCWGG 2 cut(s) 470, 558
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 3 cut(s) 82, 169, 278
BseLI CCNNNNNNNGG 1 cut(s) 190
BseNI ACTGG 2 cut(s) 184, 583
BseRI GAGGAG 2 cut(s) 140, 207
BshFI GGCC 2 cut(s) 14, 214
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 190
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 2 cut(s) 14, 214
Bsp143I GATC 4 cut(s) 324, 355, 512, 574
BspANI GGCC 2 cut(s) 14, 214
BspOI GCTAGC 1 cut(s) 399
BspPI GGATC 1 cut(s) 582
BsrI ACTGG 2 cut(s) 184, 583
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 4 cut(s) 324, 355, 512, 574
Bst2UI CCWGG 2 cut(s) 470, 558
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 1 cut(s) 58
BstF5I GGATG 3 cut(s) 82, 169, 278
BstKTI GATC 4 cut(s) 327, 358, 515, 577
BstMBI GATC 4 cut(s) 324, 355, 512, 574
BstNI CCWGG 2 cut(s) 470, 558
BstSCI CCNGG 2 cut(s) 468, 556
BstSFI CTRYAG 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
BsuRI GGCC 2 cut(s) 14, 214
BtsCI GGATG 3 cut(s) 82, 169, 278
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 55, 591
CviJI RGCY 5 cut(s) 14, 150, 214, 399, 452
CviKI_1 RGCY 5 cut(s) 14, 150, 214, 399, 452
CviQI GTAC 2 cut(s) 55, 591
DdeI CTNAG 1 cut(s) 58
DpnI GATC 4 cut(s) 326, 357, 514, 576
DpnII GATC 4 cut(s) 324, 355, 512, 574
Eco57I CTGAAG 2 cut(s) 438, 554
EcoRII CCWGG 2 cut(s) 468, 556
FaiI YATR 6 cut(s) 99, 132, 153, 520, 534, 610
FokI GGATG 3 cut(s) 69, 176, 265
FspBI CTAG 2 cut(s) 383, 396
HaeIII GGCC 2 cut(s) 14, 214
HapII CCGG 1 cut(s) 42
HinfI GANTC 2 cut(s) 38, 49
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 2 cut(s) 95, 241
Hpy188I TCNGA 3 cut(s) 19, 87, 199
Hpy188III TCNNGA 3 cut(s) 353, 383, 572
Hpy8I GTNNAC 2 cut(s) 95, 241
HpyCH4V TGCA 2 cut(s) 24, 518
HpyF3I CTNAG 1 cut(s) 58
Kzo9I GATC 4 cut(s) 324, 355, 512, 574
LmnI GCTCC 1 cut(s) 404
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 383, 396
MalI GATC 4 cut(s) 326, 357, 514, 576
MboI GATC 4 cut(s) 324, 355, 512, 574
MboII GAAGA 8 cut(s) 179, 182, 185, 188, 191, 198, 242, 334
MflI RGATCY 1 cut(s) 512
MluCI AATT 3 cut(s) 106, 144, 427
MlyI GAGTC 2 cut(s) 43, 47
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 8 cut(s) 25, 95, 118, 225, 228, 229, 285, 302
MslI CAYNNNNRTG 2 cut(s) 87, 225
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 2 cut(s) 470, 558
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 2 cut(s) 470, 558
NdeII GATC 4 cut(s) 324, 355, 512, 574
NheI GCTAGC 1 cut(s) 395
PctI GAATGC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 190
PfoI TCCNGGA 1 cut(s) 468
PleI GAGTC 2 cut(s) 43, 46
PpsI GAGTC 2 cut(s) 43, 46
PsiI TTATAA 1 cut(s) 610
Psp6I CCWGG 2 cut(s) 468, 556
PspGI CCWGG 2 cut(s) 468, 556
PspPI GGNCC 1 cut(s) 212
PsuI RGATCY 1 cut(s) 512
RsaI GTAC 2 cut(s) 56, 592
RsaNI GTAC 2 cut(s) 55, 591
RseI CAYNNNNRTG 2 cut(s) 87, 225
Sau3AI GATC 4 cut(s) 324, 355, 512, 574
Sau96I GGNCC 1 cut(s) 212
ScaI AGTACT 1 cut(s) 592
SchI GAGTC 2 cut(s) 43, 47
ScrFI CCNGG 2 cut(s) 470, 558
SetI ASST 8 cut(s) 106, 152, 240, 313, 401, 460, 487, 559
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 151
SmiMI CAYNNNNRTG 2 cut(s) 87, 225
Sse9I AATT 3 cut(s) 106, 144, 427
SspMI CTAG 2 cut(s) 383, 396
StyD4I CCNGG 2 cut(s) 468, 556
TasI AATT 3 cut(s) 106, 144, 427
TatI WGTACW 2 cut(s) 54, 590
TscAI CASTG 1 cut(s) 397
TspDTI ATGAA 4 cut(s) 17, 180, 243, 264
TspRI CASTG 1 cut(s) 397
Van91I CCANNNNNTGG 1 cut(s) 190
XbaI TCTAGA 1 cut(s) 382
XcmI CCANNNNNNNNNTGG 1 cut(s) 530
XspI CTAG 2 cut(s) 383, 396
ZrmI AGTACT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.