Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003210

Physical Location & Seq

Genomic Coordinates Forward (+)

66532012 .. 66532849

Gene Structure 838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG502800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAACATATCACAATCACAATACAATAGTGGGTGTGAATCTGGGTGGACACATTACCTAGATCAGTCGTATCTTTCTGGAAGCCATGGGATTCAAAAAGGTGATGATTATGTAGGAACAAAACCAGAATTTGAAGAGGAAGAAGAGGAGGAGGATCTATCCATGGTGTCTGATGCTTCTTCTGGACCTCCACATTACCAAGAATTATATGAAGATGGGTGTTCGTTTTCGGTTAATTCTTCGGCTTCCAAATTAGGCAAGAAAAGCAAGAAAAAGAAGAGCGAAGAACAACACCACCATCTTGATGACACTGCTAGCTCCTCAGTCTTCAACTACTACTCCAAGAAAAAGATGAGTACTCTTTCCAAGAATGAACCTTCAATGCAGAATGTACTGGATTACTCTGAGGGTTTCTCAACAACACACATGAAGGGAAAATCTGCTTTGCTGCAGCACTTTGGTTACTTGAACTCATCTCTAGCTCCACAAAACCTGGTGATTTTCAAGGAGGAAGCTGGGAGTAATGATTATGATGGGAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.2

Weight (kDa)

4.97

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33800 AT4G33800
fragaria_vesca	FvH4_2g03590 FvH4_2g03590 FvH4_2g32900 FvH4_2g32900
malus_domestica	MD05G1102500.v1.1 MD08G1080400.v1.1 MD10G1108100.v1.1 MD15G1067500.v1.1
prunus_persica	Prupe.1G421400_v2.0.a1 Prupe.1G421400_v2.0.a1 Prupe.8G147000_v2.0.a1
pyrus_communis	pycom08g06640 pycom10g09340 pycom15g06400
rosa_chinensis	RchiOBHm_Chr6g0252561 RchiOBHm_Chr6g0309821
rosa_laevigata	RLG00000010533 RLG00000015088
rosa_multiflora	Rmu_sc0002016.1_g000030 Rmu_ssc0000373.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159150 Rroxscaffold_7G00212580
rosa_rugosa	Rorug05G0536900 Rorug06G0375000 Rorug06G0375100
rosa_samantha	Rh6AG053300 Rh6AG488400 Rh6BG047100 Rh6BG498000 Rh6CG045800 Rh6CG502800 Rh6DG041500 Rh6DG488900
rosa_wichuraiana	Rw6G004780 Rw6G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	128
AfaI	GTAC	2 cut(s)	358, 393
AgsI	TTSAA	6 cut(s)	95, 134, 331, 381, 469, 505
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	3 cut(s)	318, 482, 515
AluI	AGCT	3 cut(s)	318, 482, 515
AlwI	GGATC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	448, 451
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	113, 508
AsuNHI	GCTAGC	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	435, 463
BccI	CCATC	3 cut(s)	209, 306, 527
BciT130I	CCWGG	1 cut(s)	494
BfaI	CTAG	3 cut(s)	59, 315, 479
BfmI	CTRYAG	1 cut(s)	449
BisI	GCNGC	2 cut(s)	449, 452
BlsI	GCNGC	2 cut(s)	450, 453
BmcAI	AGTACT	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	494
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	163
BmtI	GCTAGC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BsaJI	CCNNGG	2 cut(s)	85, 162
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bse1I	ACTGG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	2 cut(s)	85, 162
BseMII	CTCAG	2 cut(s)	336, 396
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	3 cut(s)	161, 164, 310
BseXI	GCAGC	2 cut(s)	435, 463
BseYI	CCCAGC	1 cut(s)	515
Bsp143I	GATC	2 cut(s)	61, 154
Bsp19I	CCATGG	2 cut(s)	85, 162
BspCNI	CTCAG	2 cut(s)	335, 397
BspMAI	CTGCAG	1 cut(s)	453
BspOI	GCTAGC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	85, 162
BssMI	GATC	2 cut(s)	61, 154
BssT1I	CCWWGG	2 cut(s)	85, 162
Bst2UI	CCWGG	1 cut(s)	494
Bst6I	CTCTTC	3 cut(s)	129, 138, 272
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	322, 405
BstDSI	CCRYGG	2 cut(s)	85, 162
BstKTI	GATC	2 cut(s)	64, 157
BstMBI	GATC	2 cut(s)	61, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	1 cut(s)	449
BstV1I	GCAGC	2 cut(s)	435, 463
BstV2I	GAAGAC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BtgI	CCRYGG	2 cut(s)	85, 162
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	492
Csp6I	GTAC	2 cut(s)	357, 392
CviAII	CATG	3 cut(s)	86, 163, 427
CviJI	RGCY	5 cut(s)	84, 245, 318, 482, 515
CviKI_1	RGCY	5 cut(s)	84, 245, 318, 482, 515
CviQI	GTAC	2 cut(s)	357, 392
DdeI	CTNAG	2 cut(s)	322, 405
DpnI	GATC	2 cut(s)	63, 156
DpnII	GATC	2 cut(s)	61, 154
Eam1104I	CTCTTC	3 cut(s)	129, 138, 272
EarI	CTCTTC	3 cut(s)	129, 138, 272
Eco130I	CCWWGG	2 cut(s)	85, 162
Eco47I	GGWCC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	2 cut(s)	85, 162
ErhI	CCWWGG	2 cut(s)	85, 162
FaeI	CATG	3 cut(s)	89, 166, 430
FaiI	YATR	8 cut(s)	8, 87, 111, 164, 208, 210, 428, 531
FatI	CATG	3 cut(s)	85, 162, 426
Fnu4HI	GCNGC	2 cut(s)	449, 452
Fsp4HI	GCNGC	2 cut(s)	449, 452
FspBI	CTAG	3 cut(s)	59, 315, 479
GluI	GCNGC	2 cut(s)	449, 452
GsaI	CCCAGC	1 cut(s)	519
Hin1II	CATG	3 cut(s)	89, 166, 430
HinfI	GANTC	2 cut(s)	38, 91
HphI	GGTGA	2 cut(s)	113, 508
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	2 cut(s)	172, 406
Hpy188III	TCNNGA	3 cut(s)	78, 183, 302
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	387, 424
HpyCH4V	TGCA	2 cut(s)	385, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	2 cut(s)	322, 405
Hsp92II	CATG	3 cut(s)	89, 166, 430
Kzo9I	GATC	2 cut(s)	61, 154
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	2 cut(s)	323, 487
LpnPI	CCDG	8 cut(s)	27, 63, 138, 168, 380, 479, 501, 506
Lsp1109I	GCAGC	2 cut(s)	435, 463
LweI	GCATC	1 cut(s)	163
MabI	ACCWGGT	1 cut(s)	492
MaeI	CTAG	3 cut(s)	59, 315, 479
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	2 cut(s)	63, 156
MboI	GATC	2 cut(s)	61, 154
MboII	GAAGA	9 cut(s)	146, 152, 155, 171, 224, 231, 289, 296, 319
MflI	RGATCY	1 cut(s)	154
MluCI	AATT	4 cut(s)	128, 203, 235, 251
MnlI	CCTC	8 cut(s)	130, 139, 142, 145, 198, 331, 400, 502
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	1 cut(s)	264
NcoI	CCATGG	2 cut(s)	85, 162
NdeII	GATC	2 cut(s)	61, 154
NheI	GCTAGC	1 cut(s)	314
NlaIII	CATG	3 cut(s)	89, 166, 430
PciSI	GCTCTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	38, 91
PkrI	GCNGC	2 cut(s)	450, 453
Psp6I	CCWGG	1 cut(s)	492
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	492
PspPI	GGNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	453
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	2 cut(s)	358, 393
RsaNI	GTAC	2 cut(s)	357, 392
RseI	CAYNNNNRTG	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	449, 452
Sau3AI	GATC	2 cut(s)	61, 154
Sau96I	GGNCC	1 cut(s)	185
ScaI	AGTACT	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	494
SetI	ASST	8 cut(s)	60, 103, 190, 320, 379, 484, 495, 517
SexAI	ACCWGGT	1 cut(s)	492
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	449
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	4 cut(s)	128, 203, 235, 251
SspMI	CTAG	3 cut(s)	59, 315, 479
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	2 cut(s)	85, 162
TasI	AATT	4 cut(s)	128, 203, 235, 251
TatI	WGTACW	2 cut(s)	356, 391
TfiI	GAWTC	2 cut(s)	38, 91
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	2 cut(s)	448, 451
TspDTI	ATGAA	4 cut(s)	17, 225, 387, 443
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	3 cut(s)	59, 315, 479
ZrmI	AGTACT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.