Rw6G004780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003210
Physical Location & Seq
Reverse (-)
7829795 .. 7831421
1627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004780.1

Sequence Viewer

Length: 549 bp
ATGAATGTGTTGGCGTCGGAATGCAGTAGTGGTTGTGAGTCCGGTTGGACTCTGTACTTAGAGCAATCTTTTGTTTCTCAACATCCGAGTGGTTCACATAGAGGTAATAGTAATGGTTTTTGTGAGGAGTATAAGGAAAAAAGAATTAGCTATAGTAATAAGGATGAAGAAGAAGAAGAAGAAGAAGACCAGTCAATGGTTTCTGATGCTTCTTCTGGGCCTCCTCATTTCAATGAAGATGAGGTTTACTTTGATGAAAACAATAATGGGTATTTTTGTCCTCCATCCAAAGATGTTAGAACATTGAAGTTTGGAGGTAAAAAGCAGAAGATCAAAGAAAAGGGTAGATGTGGTGTTCAAGATCAACAGCAACAGCAACCATCTTTTCTAGATGACACTGCTAGCTCCCCTTTTTTCAACATTTCCAAGAACAATTTGATGGTGTCCAATAATCAGGCTTCAGGTGATAGTGTCCTGGATTTCTCACAAGGTTTCTCATCAACTCATTTTCAGGTAATTGGGTTTTTCTTGTGGGGGTTTATTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.47

Weight (kDa)

4.63

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 4 cut(s) 232, 307, 359, 418
AjnI CCWGG 1 cut(s) 474
AluBI AGCT 2 cut(s) 150, 405
AluI AGCT 2 cut(s) 150, 405
AoxI GGCC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 476
AsuNHI GCTAGC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 192
BccI CCATC 3 cut(s) 292, 388, 433
BciT130I CCWGG 1 cut(s) 476
BfaI CTAG 2 cut(s) 389, 402
BfmI CTRYAG 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 476
BmsI GCATC 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 476
BseGI GGATG 3 cut(s) 82, 169, 284
BseLI CCNNNNNNNGG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 2 cut(s) 140, 213
BshFI GGCC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 196
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 1 cut(s) 220
Bsp143I GATC 2 cut(s) 330, 361
BspANI GGCC 1 cut(s) 220
BspOI GCTAGC 1 cut(s) 405
BsrI ACTGG 1 cut(s) 190
BssMI GATC 2 cut(s) 330, 361
BssNI GRCGYC 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 476
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 1 cut(s) 58
BstF5I GGATG 3 cut(s) 82, 169, 284
BstKTI GATC 2 cut(s) 333, 364
BstMBI GATC 2 cut(s) 330, 361
BstNI CCWGG 1 cut(s) 476
BstSCI CCNGG 1 cut(s) 474
BstSFI CTRYAG 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 192
BsuRI GGCC 1 cut(s) 220
BtsCI GGATG 3 cut(s) 82, 169, 284
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 403
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 3
Csp6I GTAC 1 cut(s) 55
CviJI RGCY 4 cut(s) 150, 220, 405, 458
CviKI_1 RGCY 4 cut(s) 150, 220, 405, 458
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 58
DpnI GATC 2 cut(s) 332, 363
DpnII GATC 2 cut(s) 330, 361
Eco57I CTGAAG 1 cut(s) 444
EcoRII CCWGG 1 cut(s) 474
FaiI YATR 4 cut(s) 99, 132, 153, 547
FokI GGATG 3 cut(s) 69, 176, 271
FspBI CTAG 2 cut(s) 389, 402
HaeIII GGCC 1 cut(s) 220
HapII CCGG 1 cut(s) 42
HgaI GACGC 1 cut(s) 3
Hin1I GRCGYC 1 cut(s) 14
HinfI GANTC 2 cut(s) 38, 49
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 476
Hpy166II GTNNAC 2 cut(s) 95, 247
Hpy188I TCNGA 3 cut(s) 19, 87, 205
Hpy188III TCNNGA 2 cut(s) 359, 389
Hpy8I GTNNAC 2 cut(s) 95, 247
Hpy99I CGWCG 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 14
Kzo9I GATC 2 cut(s) 330, 361
LmnI GCTCC 1 cut(s) 410
LpnPI CCDG 8 cut(s) 55, 201, 203, 440, 447, 461, 488, 497
LweI GCATC 1 cut(s) 196
MaeI CTAG 2 cut(s) 389, 402
MalI GATC 2 cut(s) 332, 363
MboI GATC 2 cut(s) 330, 361
MluCI AATT 3 cut(s) 144, 433, 516
MlyI GAGTC 2 cut(s) 43, 47
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 7 cut(s) 95, 118, 231, 234, 235, 291, 308
MslI CAYNNNNRTG 2 cut(s) 87, 231
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 476
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 1 cut(s) 476
NdeII GATC 2 cut(s) 330, 361
NheI GCTAGC 1 cut(s) 401
PctI GAATGC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 196
PfoI TCCNGGA 1 cut(s) 474
PleI GAGTC 2 cut(s) 43, 46
PpsI GAGTC 2 cut(s) 43, 46
Psp6I CCWGG 1 cut(s) 474
PspGI CCWGG 1 cut(s) 474
PspPI GGNCC 1 cut(s) 218
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 87, 231
Sau3AI GATC 2 cut(s) 330, 361
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 2 cut(s) 43, 47
ScrFI CCNGG 1 cut(s) 476
SetI ASST 8 cut(s) 106, 152, 246, 319, 407, 466, 493, 516
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 151
SmiMI CAYNNNNRTG 2 cut(s) 87, 231
Sse9I AATT 3 cut(s) 144, 433, 516
SspMI CTAG 2 cut(s) 389, 402
StyD4I CCNGG 1 cut(s) 474
TasI AATT 3 cut(s) 144, 433, 516
TatI WGTACW 1 cut(s) 54
TscAI CASTG 1 cut(s) 403
TspDTI ATGAA 4 cut(s) 17, 180, 249, 270
TspRI CASTG 1 cut(s) 403
Van91I CCANNNNNTGG 1 cut(s) 196
XbaI TCTAGA 1 cut(s) 388
XspI CTAG 2 cut(s) 389, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.