Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003210

Physical Location & Seq

Genomic Coordinates Reverse (-)

36405118 .. 36406546

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G421400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAATATATCACCATCACAATGCAATAGTGGTTGTGAATCTGGGTGGACGCATTACCTAGATCAGTCCTATTTCTCTCAAAGTCAGTTCCAGAGAGCTGGGGGCATTGCTGATTACGAGGGAGCAAAAACAGAAGTGGAGGAGGAAGAAGAAGAGGACCTGTCAATGGTTTCTGATGCTTCTTCTGGACCTCCCCATTACCATGATTTAGATGAAGACTGCTTGTATGAAAATGGATGCTCTTTTTCTGTTTCTTGGGGTTCCAAATTGGGAAAGAAGAGCAAGAAGAAAGGCAAAGAAAGTGGCAGAGAACAGCATCTTGATGACACTGCTAGCTCCCCAGTCCTCAACTACTCTAAGAAAAAGTTGAGCACTCTCTCCAAGGATGAATCTTCAATGCAGAATGTATTGGGTTACTCTGAGGGTTTCTCTGCAACACATATGAAGGGGAAATCTGCATTGCTGCAGCATTTTGGTTTCTTGAAGTCATCTCTAGCCAAAAGTCCAGCTTCACAAAAACCAGGTGATTTCCAAGAAGGAAGCTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.1

Weight (kDa)

5.16

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33800 AT4G33800
fragaria_vesca	FvH4_2g03590 FvH4_2g03590 FvH4_2g32900 FvH4_2g32900
malus_domestica	MD05G1102500.v1.1 MD08G1080400.v1.1 MD10G1108100.v1.1 MD15G1067500.v1.1
prunus_persica	Prupe.1G421400_v2.0.a1 Prupe.1G421400_v2.0.a1 Prupe.8G147000_v2.0.a1
pyrus_communis	pycom08g06640 pycom10g09340 pycom15g06400
rosa_chinensis	RchiOBHm_Chr6g0252561 RchiOBHm_Chr6g0309821
rosa_laevigata	RLG00000010533 RLG00000015088
rosa_multiflora	Rmu_sc0002016.1_g000030 Rmu_ssc0000373.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159150 Rroxscaffold_7G00212580
rosa_rugosa	Rorug05G0536900 Rorug06G0375000 Rorug06G0375100
rosa_samantha	Rh6AG053300 Rh6AG488400 Rh6BG047100 Rh6BG498000 Rh6CG045800 Rh6CG502800 Rh6DG041500 Rh6DG488900
rosa_wichuraiana	Rw6G004780 Rw6G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	396, 484
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	4 cut(s)	98, 336, 509, 543
AluI	AGCT	4 cut(s)	98, 336, 509, 543
Alw21I	GWGCWC	1 cut(s)	374
ApeKI	GCWGC	2 cut(s)	463, 466
AspS9I	GGNCC	2 cut(s)	157, 188
AsuHPI	GGTGA	2 cut(s)	3, 536
AsuNHI	GCTAGC	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	157, 188
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	450, 478
BccI	CCATC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	522
BfaI	CTAG	3 cut(s)	59, 333, 494
BfmI	CTRYAG	1 cut(s)	464
BisI	GCNGC	2 cut(s)	464, 467
BlsI	GCNGC	2 cut(s)	465, 468
Bme1390I	CCNGG	1 cut(s)	522
Bme18I	GGWCC	2 cut(s)	157, 188
BmgT120I	GGNCC	2 cut(s)	157, 188
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	522
BmrI	ACTGGG	1 cut(s)	335
BmsI	GCATC	3 cut(s)	166, 227, 325
BmtI	GCTAGC	1 cut(s)	336
BmuI	ACTGGG	1 cut(s)	335
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BsaJI	CCNNGG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	2 cut(s)	105, 458
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	242, 391
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	2 cut(s)	105, 458
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	450, 478
BseYI	CCCAGC	2 cut(s)	98, 543
BsiHKAI	GWGCWC	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	468
BspOI	GCTAGC	1 cut(s)	336
BspQI	GCTCTTC	1 cut(s)	272
BsrDI	GCAATG	2 cut(s)	105, 458
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	522
Bst6I	CTCTTC	2 cut(s)	147, 272
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	357, 420
BstF5I	GGATG	2 cut(s)	242, 391
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	522
BstSCI	CCNGG	1 cut(s)	520
BstSFI	CTRYAG	1 cut(s)	464
BstV1I	GCAGC	2 cut(s)	450, 478
BstV2I	GAAGAC	1 cut(s)	222
BstXI	CCANNNNNNTGG	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	242, 391
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	157, 188
CseI	GACGC	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	520
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	5 cut(s)	98, 336, 497, 509, 543
CviKI_1	RGCY	5 cut(s)	98, 336, 497, 509, 543
DdeI	CTNAG	2 cut(s)	357, 420
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	147, 272
EarI	CTCTTC	2 cut(s)	147, 272
Eco130I	CCWWGG	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	157, 188
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	1 cut(s)	206
FaiI	YATR	5 cut(s)	8, 204, 228, 441, 443
FalI	AAGNNNNNCTT	2 cut(s)	493, 525
FatI	CATG	1 cut(s)	202
FauNDI	CATATG	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	464, 467
FokI	GGATG	2 cut(s)	249, 398
Fsp4HI	GCNGC	2 cut(s)	464, 467
FspBI	CTAG	3 cut(s)	59, 333, 494
GluI	GCNGC	2 cut(s)	464, 467
GsaI	CCCAGC	2 cut(s)	102, 547
HgaI	GACGC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	206
HinfI	GANTC	2 cut(s)	38, 389
HphI	GGTGA	2 cut(s)	3, 536
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	2 cut(s)	175, 421
Hpy188III	TCNNGA	4 cut(s)	91, 186, 320, 481
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	439, 530
HpyCH4V	TGCA	5 cut(s)	24, 400, 434, 458, 466
HpyF3I	CTNAG	2 cut(s)	357, 420
Hsp92II	CATG	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	61
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	2 cut(s)	122, 341
Lsp1109I	GCAGC	2 cut(s)	450, 478
LweI	GCATC	3 cut(s)	166, 227, 325
MabI	ACCWGGT	1 cut(s)	520
MaeI	CTAG	3 cut(s)	59, 333, 494
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	8 cut(s)	158, 161, 164, 174, 227, 289, 298, 384
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	1 cut(s)	266
MnlI	CCTC	7 cut(s)	112, 133, 136, 148, 201, 356, 415
MslI	CAYNNNNRTG	3 cut(s)	19, 201, 321
MspR9I	CCNGG	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	522
NdeI	CATATG	1 cut(s)	441
NdeII	GATC	1 cut(s)	61
NheI	GCTAGC	1 cut(s)	332
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	38, 389
PkrI	GCNGC	2 cut(s)	465, 468
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	520
PspFI	CCCAGC	2 cut(s)	98, 543
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	2 cut(s)	157, 188
PspPPI	RGGWCCY	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	468
RseI	CAYNNNNRTG	3 cut(s)	19, 201, 321
SapI	GCTCTTC	1 cut(s)	272
SatI	GCNGC	2 cut(s)	464, 467
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	2 cut(s)	157, 188
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	8 cut(s)	60, 100, 162, 193, 338, 511, 526, 545
SexAI	ACCWGGT	1 cut(s)	520
SfaNI	GCATC	3 cut(s)	166, 227, 325
SfcI	CTRYAG	1 cut(s)	464
SinI	GGWCC	2 cut(s)	157, 188
SmiMI	CAYNNNNRTG	3 cut(s)	19, 201, 321
Sse9I	AATT	1 cut(s)	266
SspMI	CTAG	3 cut(s)	59, 333, 494
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	1 cut(s)	381
TasI	AATT	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	38, 389
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	2 cut(s)	463, 466
TspDTI	ATGAA	5 cut(s)	17, 228, 243, 402, 458
TspRI	CASTG	1 cut(s)	334
VpaK11BI	GGWCC	2 cut(s)	157, 188
XspI	CTAG	3 cut(s)	59, 333, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.