Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003210

Physical Location & Seq

Genomic Coordinates Reverse (-)

5190030 .. 5190892

Gene Structure 863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06640.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAATATATCACCATCACAATGCAATATTGGGTGTGAATCTGGATGGACAAGTTACTTAGATGAGTCCTCCTATCTTTCTCAAAGTCAGTTCCAAAAAACTGGGGGTTTTGCTGATTATGTGGAGACAAAAGAAGAAGAAGATCTGTCGATGGTGTCTGATGCTTCTTCTGGACCTCCACATTACCACGAATTTGATGAAGACTGCGTGTACGAAAACAGGTCTTCCTTTTCGGTTTCGTGGGGTTCCAAGTTGGGAAAGAAGGGCAAGAAGAAAAGCAAAGGAAGTGGCAGCCGAGAACAACACCTTGATGACACTGCTAGCTCCCCAGTCCTCAACTACTCCAAGAAGAAGTTGAGTGCTAATTTCCCAAAGGATGAATCTTCAATGCAGAATGTATTGGATTACTCTGAGGGTTTTTCTGCAACACATATAAAGGGAAAATCTGCATTGCTGCAGCACTTTGGTTTCTTCAAGTCATCTCTAGCCAAAAGTCCAGCTTCACAAAAACCAGGTGATTTCCAAGGAGGAAGTTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.79

Weight (kDa)

5.75

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33800 AT4G33800
fragaria_vesca	FvH4_2g03590 FvH4_2g03590 FvH4_2g32900 FvH4_2g32900
malus_domestica	MD05G1102500.v1.1 MD08G1080400.v1.1 MD10G1108100.v1.1 MD15G1067500.v1.1
prunus_persica	Prupe.1G421400_v2.0.a1 Prupe.1G421400_v2.0.a1 Prupe.8G147000_v2.0.a1
pyrus_communis	pycom08g06640 pycom10g09340 pycom15g06400
rosa_chinensis	RchiOBHm_Chr6g0252561 RchiOBHm_Chr6g0309821
rosa_laevigata	RLG00000010533 RLG00000015088
rosa_multiflora	Rmu_sc0002016.1_g000030 Rmu_ssc0000373.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159150 Rroxscaffold_7G00212580
rosa_rugosa	Rorug05G0536900 Rorug06G0375000 Rorug06G0375100
rosa_samantha	Rh6AG053300 Rh6AG488400 Rh6BG047100 Rh6BG498000 Rh6CG045800 Rh6CG502800 Rh6DG041500 Rh6DG488900
rosa_wichuraiana	Rw6G004780 Rw6G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	387, 475
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	2 cut(s)	324, 500
AluI	AGCT	2 cut(s)	324, 500
Alw26I	GTCTC	1 cut(s)	119
ApeKI	GCWGC	3 cut(s)	291, 454, 457
ApoI	RAATTY	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	3, 527
AsuNHI	GCTAGC	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	173
BbsI	GAAGAC	2 cut(s)	207, 216
BbvI	GCAGC	3 cut(s)	303, 441, 469
BccI	CCATC	3 cut(s)	22, 39, 145
BciT130I	CCWGG	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	321, 485
BfmI	CTRYAG	1 cut(s)	455
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	3 cut(s)	292, 455, 458
BlsI	GCNGC	3 cut(s)	293, 456, 459
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	513
BmrI	ACTGGG	2 cut(s)	111, 323
BmsI	GCATC	1 cut(s)	151
BmtI	GCTAGC	1 cut(s)	324
BmuI	ACTGGG	2 cut(s)	111, 323
BpiI	GAAGAC	2 cut(s)	207, 216
BsaJI	CCNNGG	1 cut(s)	523
Bse1I	ACTGG	2 cut(s)	106, 329
Bse3DI	GCAATG	1 cut(s)	449
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	523
BseGI	GGATG	2 cut(s)	50, 382
BseMI	GCAATG	1 cut(s)	449
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	106, 329
BseXI	GCAGC	3 cut(s)	303, 441, 469
BsmAI	GTCTC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	459
BspOI	GCTAGC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	449
BsrI	ACTGG	2 cut(s)	106, 329
BssECI	CCNNGG	1 cut(s)	523
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	513
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	2 cut(s)	58, 411
BstF5I	GGATG	2 cut(s)	50, 382
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	455
BstV1I	GCAGC	3 cut(s)	303, 441, 469
BstV2I	GAAGAC	2 cut(s)	207, 216
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	50, 382
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	173
CsiI	ACCWGGT	1 cut(s)	511
Csp6I	GTAC	1 cut(s)	211
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviJI	RGCY	4 cut(s)	294, 324, 488, 500
CviKI_1	RGCY	4 cut(s)	294, 324, 488, 500
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	2 cut(s)	58, 411
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	523
FaiI	YATR	4 cut(s)	8, 120, 432, 434
FalI	AAGNNNNNCTT	2 cut(s)	484, 516
Fnu4HI	GCNGC	3 cut(s)	292, 455, 458
FokI	GGATG	2 cut(s)	57, 389
Fsp4HI	GCNGC	3 cut(s)	292, 455, 458
FspBI	CTAG	2 cut(s)	321, 485
GluI	GCNGC	3 cut(s)	292, 455, 458
HinfI	GANTC	3 cut(s)	38, 65, 380
HphI	GGTGA	2 cut(s)	3, 527
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	160, 412
Hpy188III	TCNNGA	2 cut(s)	42, 171
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	256
HpyCH4V	TGCA	5 cut(s)	24, 391, 425, 449, 457
HpyF3I	CTNAG	2 cut(s)	58, 411
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	8 cut(s)	27, 87, 156, 205, 342, 498, 510, 525
Lsp1109I	GCAGC	3 cut(s)	303, 441, 469
LweI	GCATC	1 cut(s)	151
MabI	ACCWGGT	1 cut(s)	511
MaeI	CTAG	2 cut(s)	321, 485
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	2 cut(s)	191, 364
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	5 cut(s)	79, 186, 344, 406, 521
MslI	CAYNNNNRTG	2 cut(s)	19, 309
MspR9I	CCNGG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	513
NdeII	GATC	1 cut(s)	142
NheI	GCTAGC	1 cut(s)	320
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	38, 380
PkrI	GCNGC	3 cut(s)	293, 456, 459
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	2 cut(s)	19, 309
SatI	GCNGC	3 cut(s)	292, 455, 458
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	513
SetI	ASST	6 cut(s)	178, 224, 309, 326, 502, 517
SexAI	ACCWGGT	1 cut(s)	511
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	19, 309
Sse9I	AATT	2 cut(s)	191, 364
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	2 cut(s)	321, 485
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	1 cut(s)	523
TaqI	TCGA	1 cut(s)	149
TasI	AATT	2 cut(s)	191, 364
TfiI	GAWTC	2 cut(s)	38, 380
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	3 cut(s)	291, 454, 457
TspDTI	ATGAA	3 cut(s)	17, 213, 393
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	191
XspI	CTAG	2 cut(s)	321, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.