Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003210

Physical Location & Seq

Genomic Coordinates Forward (+)

16222931 .. 16224444

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G147000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAATGTGTTGGCCTCAGAATGCAGTAGTGGTTGTGAGTCTGGTTGGACTCTATACTTGGAACAGTCTAATTTTCTTTCTCATAATCCAAGGGCTTCACATAGAGATAGTGGTTTCTGTGATGAGTACAAGGATAAAAGAAGTAAACAAGCTGATGGAGATGAGGAGGATGAAGAAGAAGAGGACCAGTCAATGGTTTCTGATGCATCTTCTGGGCCTCCACATTTCAATGAAGATGAAGTTTACTTAGATGATAATACTACTAATAATATTAATGGGTGTTTCTATCCTCCATCCAAGGATCTTGGACCTTTGAAGTTTACAGGAAAAAAGCAGAGAATCAAAGAAAAAGGTAGGCGCTCATGTGGTGATCAACAACAACAACCATCTTTTCTAGATGACACTGCCAGCTCTCCTGTCTTCAACTACTCCAAGAATAACTTCATTGTGTCCAATAATCAAGCTTCTGGGGGTAGTAGTAGTGTCCTGGATTATTCACAAGGCTTCTCATCTACTCATTTTCAGGGGAGATCTGCATACCAAGACCACTTTGGTTTCCTACAATCTACTCTATCTGGAAATAACCTTCAGAACAACCAATGGTTTCAAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.77

Weight (kDa)

4.67

Isoelectric Point (pI)

63.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33800 AT4G33800
fragaria_vesca	FvH4_2g03590 FvH4_2g03590 FvH4_2g32900 FvH4_2g32900
malus_domestica	MD05G1102500.v1.1 MD08G1080400.v1.1 MD10G1108100.v1.1 MD15G1067500.v1.1
prunus_persica	Prupe.1G421400_v2.0.a1 Prupe.1G421400_v2.0.a1 Prupe.8G147000_v2.0.a1
pyrus_communis	pycom08g06640 pycom10g09340 pycom15g06400
rosa_chinensis	RchiOBHm_Chr6g0252561 RchiOBHm_Chr6g0309821
rosa_laevigata	RLG00000010533 RLG00000015088
rosa_multiflora	Rmu_sc0002016.1_g000030 Rmu_ssc0000373.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159150 Rroxscaffold_7G00212580
rosa_rugosa	Rorug05G0536900 Rorug06G0375000 Rorug06G0375100
rosa_samantha	Rh6AG053300 Rh6AG488400 Rh6BG047100 Rh6BG498000 Rh6CG045800 Rh6CG502800 Rh6DG041500 Rh6DG488900
rosa_wichuraiana	Rw6G004780 Rw6G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	193
AclWI	GGATC	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	572
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	4 cut(s)	229, 316, 424, 608
AjnI	CCWGG	1 cut(s)	486
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	3 cut(s)	152, 411, 464
AluI	AGCT	3 cut(s)	152, 411, 464
AlwI	GGATC	1 cut(s)	309
AoxI	GGCC	2 cut(s)	12, 215
AseI	ATTAAT	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	3 cut(s)	184, 215, 308
AsuHPI	GGTGA	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	184, 308
BbsI	GAAGAC	1 cut(s)	412
BccI	CCATC	3 cut(s)	149, 301, 394
BciT130I	CCWGG	1 cut(s)	488
BclI	TGATCA	1 cut(s)	370
BfaI	CTAG	1 cut(s)	395
BfoI	RGCGCY	1 cut(s)	361
BglII	AGATCT	1 cut(s)	530
Bme1390I	CCNGG	1 cut(s)	488
Bme18I	GGWCC	2 cut(s)	184, 308
BmgT120I	GGNCC	3 cut(s)	184, 215, 308
BmrFI	CCNGG	1 cut(s)	488
BmsI	GCATC	2 cut(s)	193, 215
BpiI	GAAGAC	1 cut(s)	412
BsaJI	CCNNGG	2 cut(s)	89, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	89, 297
BseGI	GGATG	2 cut(s)	175, 293
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	14, 217
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	14, 217
Bsp143I	GATC	3 cut(s)	301, 370, 530
BspANI	GGCC	2 cut(s)	14, 217
BspCNI	CTCAG	1 cut(s)	29
BspPI	GGATC	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	89, 297
BssMI	GATC	3 cut(s)	301, 370, 530
BssT1I	CCWWGG	2 cut(s)	89, 297
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	16, 247
BstF5I	GGATG	2 cut(s)	175, 293
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	3 cut(s)	304, 373, 533
BstMBI	GATC	3 cut(s)	301, 370, 530
BstNI	CCWGG	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	486
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	2 cut(s)	301, 530
BstYI	RGATCY	2 cut(s)	301, 530
BsuRI	GGCC	2 cut(s)	14, 217
BtsCI	GGATG	2 cut(s)	175, 293
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	409
CfoI	GCGC	1 cut(s)	360
Cfr13I	GGNCC	3 cut(s)	184, 215, 308
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	1 cut(s)	363
CviJI	RGCY	7 cut(s)	14, 95, 152, 217, 411, 464, 504
CviKI_1	RGCY	7 cut(s)	14, 95, 152, 217, 411, 464, 504
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	2 cut(s)	16, 247
DpnI	GATC	3 cut(s)	303, 372, 532
DpnII	GATC	3 cut(s)	301, 370, 530
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	89, 297
Eco47I	GGWCC	2 cut(s)	184, 308
Eco57I	CTGAAG	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	486
EcoT14I	CCWWGG	2 cut(s)	89, 297
EcoT22I	ATGCAT	1 cut(s)	208
ErhI	CCWWGG	2 cut(s)	89, 297
FaeI	CATG	1 cut(s)	366
FaiI	YATR	5 cut(s)	55, 84, 102, 364, 538
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	1 cut(s)	362
FbaI	TGATCA	1 cut(s)	370
FokI	GGATG	2 cut(s)	182, 280
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	2 cut(s)	14, 217
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	1 cut(s)	366
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	462
HinfI	GANTC	3 cut(s)	38, 49, 339
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	3 cut(s)	146, 244, 321
Hpy188I	TCNGA	3 cut(s)	19, 202, 591
Hpy188III	TCNNGA	2 cut(s)	395, 576
Hpy8I	GTNNAC	3 cut(s)	146, 244, 321
HpyAV	CCTTC	1 cut(s)	596
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	24, 206, 536
HpyF3I	CTNAG	2 cut(s)	16, 247
Hsp92II	CATG	1 cut(s)	366
HspAI	GCGC	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	301, 370, 530
LweI	GCATC	2 cut(s)	193, 215
MaeI	CTAG	1 cut(s)	395
MalI	GATC	3 cut(s)	303, 372, 532
MboI	GATC	3 cut(s)	301, 370, 530
MboII	GAAGA	6 cut(s)	185, 188, 191, 201, 245, 412
MflI	RGATCY	2 cut(s)	301, 530
MluCI	AATT	1 cut(s)	70
MlyI	GAGTC	2 cut(s)	43, 47
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	6 cut(s)	25, 157, 160, 175, 228, 300
Mph1103I	ATGCAT	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	440
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	488
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	488
NdeII	GATC	3 cut(s)	301, 370, 530
NlaIII	CATG	1 cut(s)	366
NsiI	ATGCAT	1 cut(s)	208
PctI	GAATGC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	339
PflMI	CCANNNNNTGG	1 cut(s)	193
PfoI	TCCNGGA	1 cut(s)	486
PleI	GAGTC	2 cut(s)	43, 46
PpsI	GAGTC	2 cut(s)	43, 46
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	486
PspPI	GGNCC	3 cut(s)	184, 215, 308
PsuI	RGATCY	2 cut(s)	301, 530
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	273
Sau3AI	GATC	3 cut(s)	301, 370, 530
Sau96I	GGNCC	3 cut(s)	184, 215, 308
SchI	GAGTC	2 cut(s)	43, 47
ScrFI	CCNGG	1 cut(s)	488
SetI	ASST	6 cut(s)	154, 313, 355, 413, 466, 588
SfaNI	GCATC	2 cut(s)	193, 215
SinI	GGWCC	2 cut(s)	184, 308
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	1 cut(s)	70
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	486
StyI	CCWWGG	2 cut(s)	89, 297
TaaI	ACNGT	1 cut(s)	66
TasI	AATT	1 cut(s)	70
TatI	WGTACW	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	409
TspDTI	ATGAA	5 cut(s)	17, 186, 246, 252, 433
TspRI	CASTG	1 cut(s)	409
Van91I	CCANNNNNTGG	1 cut(s)	193
VpaK11BI	GGWCC	2 cut(s)	184, 308
VspI	ATTAAT	1 cut(s)	273
XbaI	TCTAGA	1 cut(s)	394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	1 cut(s)	395
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.