Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000373.1

Orthogroup ID

OG0003210

Physical Location & Seq

Genomic Coordinates Reverse (-)

35164 .. 36016

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000373.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgaacatatcacaatcacaatacaatagtgggtgtgaatctgggtggacacattacctagatcagtcgtatctttctggaagccatgggattcaaaaaggtgatgattatgtaggaacaaaaccagaatttgaagaggaagaagaggaggaggatctatccatggtgtctgatgcttcttctggacctccacattaccaagaattatatgaagatgggtgttcgttttcggttaattcttcggcttccaaattaggcaagaaaagcaagaaaaagaagagcaaagaaagtagaggcaaagaacaacaccaccatcttgatgacactgctagctcctcagtcttcaactactactccaagaaaaagatgagtactctttccaagaatgaaccttcaatgcagaatgtactggattactctgagggtttctcaacaacacatatgaagggaaaatctgctttgctgcagcactttggttacttgaactcatctctagctccacaaaacctggtgattttcaaggaggaagctgggagtaatgattatgatgggaatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.76

Weight (kDa)

5.26

Isoelectric Point (pI)

53.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33800 AT4G33800
fragaria_vesca	FvH4_2g03590 FvH4_2g03590 FvH4_2g32900 FvH4_2g32900
malus_domestica	MD05G1102500.v1.1 MD08G1080400.v1.1 MD10G1108100.v1.1 MD15G1067500.v1.1
prunus_persica	Prupe.1G421400_v2.0.a1 Prupe.1G421400_v2.0.a1 Prupe.8G147000_v2.0.a1
pyrus_communis	pycom08g06640 pycom10g09340 pycom15g06400
rosa_chinensis	RchiOBHm_Chr6g0252561 RchiOBHm_Chr6g0309821
rosa_laevigata	RLG00000010533 RLG00000015088
rosa_multiflora	Rmu_sc0002016.1_g000030 Rmu_ssc0000373.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159150 Rroxscaffold_7G00212580
rosa_rugosa	Rorug05G0536900 Rorug06G0375000 Rorug06G0375100
rosa_samantha	Rh6AG053300 Rh6AG488400 Rh6BG047100 Rh6BG498000 Rh6CG045800 Rh6CG502800 Rh6DG041500 Rh6DG488900
rosa_wichuraiana	Rw6G004780 Rw6G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	128
AfaI	GTAC	2 cut(s)	373, 408
AgsI	TTSAA	6 cut(s)	95, 134, 346, 396, 484, 520
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	3 cut(s)	333, 497, 530
AluI	AGCT	3 cut(s)	333, 497, 530
AlwI	GGATC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	463, 466
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	113, 523
AsuNHI	GCTAGC	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	450, 478
BccI	CCATC	3 cut(s)	209, 321, 542
BciT130I	CCWGG	1 cut(s)	509
BfaI	CTAG	3 cut(s)	59, 330, 494
BfmI	CTRYAG	1 cut(s)	464
BisI	GCNGC	2 cut(s)	464, 467
BlsI	GCNGC	2 cut(s)	465, 468
BmcAI	AGTACT	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	509
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	1 cut(s)	163
BmtI	GCTAGC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	334
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BsaJI	CCNNGG	2 cut(s)	85, 162
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bse1I	ACTGG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	2 cut(s)	85, 162
BseMII	CTCAG	2 cut(s)	351, 411
BseNI	ACTGG	1 cut(s)	414
BseRI	GAGGAG	3 cut(s)	161, 164, 325
BseXI	GCAGC	2 cut(s)	450, 478
BseYI	CCCAGC	1 cut(s)	530
Bsp143I	GATC	2 cut(s)	61, 154
Bsp19I	CCATGG	2 cut(s)	85, 162
BspCNI	CTCAG	2 cut(s)	350, 412
BspMAI	CTGCAG	1 cut(s)	468
BspOI	GCTAGC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	85, 162
BssMI	GATC	2 cut(s)	61, 154
BssT1I	CCWWGG	2 cut(s)	85, 162
Bst2UI	CCWGG	1 cut(s)	509
Bst6I	CTCTTC	3 cut(s)	129, 138, 272
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	337, 420
BstDSI	CCRYGG	2 cut(s)	85, 162
BstKTI	GATC	2 cut(s)	64, 157
BstMBI	GATC	2 cut(s)	61, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	464
BstV1I	GCAGC	2 cut(s)	450, 478
BstV2I	GAAGAC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BtgI	CCRYGG	2 cut(s)	85, 162
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	372, 407
CviAII	CATG	2 cut(s)	86, 163
CviJI	RGCY	5 cut(s)	84, 245, 333, 497, 530
CviKI_1	RGCY	5 cut(s)	84, 245, 333, 497, 530
CviQI	GTAC	2 cut(s)	372, 407
DdeI	CTNAG	2 cut(s)	337, 420
DpnI	GATC	2 cut(s)	63, 156
DpnII	GATC	2 cut(s)	61, 154
Eam1104I	CTCTTC	3 cut(s)	129, 138, 272
EarI	CTCTTC	3 cut(s)	129, 138, 272
Eco130I	CCWWGG	2 cut(s)	85, 162
Eco47I	GGWCC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	2 cut(s)	85, 162
ErhI	CCWWGG	2 cut(s)	85, 162
FaeI	CATG	2 cut(s)	89, 166
FaiI	YATR	9 cut(s)	8, 87, 111, 164, 208, 210, 441, 443, 546
FatI	CATG	2 cut(s)	85, 162
FauNDI	CATATG	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	464, 467
Fsp4HI	GCNGC	2 cut(s)	464, 467
FspBI	CTAG	3 cut(s)	59, 330, 494
GluI	GCNGC	2 cut(s)	464, 467
GsaI	CCCAGC	1 cut(s)	534
Hin1II	CATG	2 cut(s)	89, 166
HinfI	GANTC	2 cut(s)	38, 91
HphI	GGTGA	2 cut(s)	113, 523
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	2 cut(s)	172, 421
Hpy188III	TCNNGA	3 cut(s)	78, 183, 317
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	402, 439
HpyCH4V	TGCA	2 cut(s)	400, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	2 cut(s)	337, 420
Hsp92II	CATG	2 cut(s)	89, 166
Kzo9I	GATC	2 cut(s)	61, 154
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	2 cut(s)	338, 502
LpnPI	CCDG	8 cut(s)	27, 63, 138, 168, 395, 494, 516, 521
Lsp1109I	GCAGC	2 cut(s)	450, 478
LweI	GCATC	1 cut(s)	163
MabI	ACCWGGT	1 cut(s)	507
MaeI	CTAG	3 cut(s)	59, 330, 494
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	2 cut(s)	63, 156
MboI	GATC	2 cut(s)	61, 154
MboII	GAAGA	8 cut(s)	146, 152, 155, 171, 224, 231, 289, 334
MflI	RGATCY	1 cut(s)	154
MluCI	AATT	4 cut(s)	128, 203, 235, 251
MnlI	CCTC	9 cut(s)	130, 139, 142, 145, 198, 287, 346, 415, 517
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	264
NcoI	CCATGG	2 cut(s)	85, 162
NdeI	CATATG	1 cut(s)	441
NdeII	GATC	2 cut(s)	61, 154
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	2 cut(s)	89, 166
PciSI	GCTCTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	38, 91
PkrI	GCNGC	2 cut(s)	465, 468
Psp6I	CCWGG	1 cut(s)	507
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	507
PspPI	GGNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	468
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	2 cut(s)	373, 408
RsaNI	GTAC	2 cut(s)	372, 407
RseI	CAYNNNNRTG	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	464, 467
Sau3AI	GATC	2 cut(s)	61, 154
Sau96I	GGNCC	1 cut(s)	185
ScaI	AGTACT	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	509
SetI	ASST	8 cut(s)	60, 103, 190, 335, 394, 499, 510, 532
SexAI	ACCWGGT	1 cut(s)	507
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	464
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	4 cut(s)	128, 203, 235, 251
SspMI	CTAG	3 cut(s)	59, 330, 494
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	2 cut(s)	85, 162
TasI	AATT	4 cut(s)	128, 203, 235, 251
TatI	WGTACW	2 cut(s)	371, 406
TfiI	GAWTC	2 cut(s)	38, 91
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	2 cut(s)	463, 466
TspDTI	ATGAA	4 cut(s)	17, 225, 402, 458
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	3 cut(s)	59, 330, 494
ZrmI	AGTACT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.