Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003210

Physical Location & Seq

Genomic Coordinates Forward (+)

21277652 .. 21279492

Gene Structure 1841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1102500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAATGTGTTTGCCTCAGAATGCAGTAGTGGTTGTGAGTCTGGTTGGACTGTATACTTGGTGCACTCTGATTATCTTTCTCATATTCCAAGTGCTTCACGAAGCAGAGATATGAATGGAAAGAGAAAGTCTGATTTTTGTGATATACAAGTTGATGAGGAGCCGGATGATGAAGAAGAAGATCAATCAATGGTTTCTGATGCATCTTCTGGGCCTCCACATTTCAATGAAAATGAGGTCCACTTTGATGAAAACAACAACAATAATAATAATGGGTGTTCTTATCCTCCTCAAATATCCAAGGATGCAGAAAATTTGAAGATTGGAGGAAAAAGGAAGCAAAGAAATAATATCAAAGGAAAAGGTAGGCGCTCGTGTGGTGATCAACAACAACAGCAATCTTTTTTAGATGACACTGCTAGCTCTCCTGTCTTCAACTACTCCAAGAATAACTTCATTGGGTCAAATAATCAAGCTTCTGGAAGCAGTGTTCTGGATTATTCACAAGATTTCTCATCTACACATTTTCGGGGGAGATCTGGATACCAAGACCTGCAATTTGGTTTCTTACAATCTAGTAATCCATCTGGAAATAACCAGTGGTTTCAAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.75

Weight (kDa)

4.86

Isoelectric Point (pI)

62.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33800 AT4G33800
fragaria_vesca	FvH4_2g03590 FvH4_2g03590 FvH4_2g32900 FvH4_2g32900
malus_domestica	MD05G1102500.v1.1 MD08G1080400.v1.1 MD10G1108100.v1.1 MD15G1067500.v1.1
prunus_persica	Prupe.1G421400_v2.0.a1 Prupe.1G421400_v2.0.a1 Prupe.8G147000_v2.0.a1
pyrus_communis	pycom08g06640 pycom10g09340 pycom15g06400
rosa_chinensis	RchiOBHm_Chr6g0252561 RchiOBHm_Chr6g0309821
rosa_laevigata	RLG00000010533 RLG00000015088
rosa_multiflora	Rmu_sc0002016.1_g000030 Rmu_ssc0000373.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159150 Rroxscaffold_7G00212580
rosa_rugosa	Rorug05G0536900 Rorug06G0375000 Rorug06G0375100
rosa_samantha	Rh6AG053300 Rh6AG488400 Rh6BG047100 Rh6BG498000 Rh6CG045800 Rh6CG502800 Rh6DG041500 Rh6DG488900
rosa_wichuraiana	Rw6G004780 Rw6G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	561
AccI	GTMKAC	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	313
AgsI	TTSAA	4 cut(s)	226, 319, 436, 608
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AloI	GAACNNNNNNTCC	2 cut(s)	474, 506
AluBI	AGCT	2 cut(s)	423, 476
AluI	AGCT	2 cut(s)	423, 476
Alw21I	GWGCWC	1 cut(s)	66
Alw44I	GTGCAC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	212
ApaLI	GTGCAC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	313
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
Asp700I	GAANNNNTTC	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	2 cut(s)	212, 238
AsuHPI	GGTGA	1 cut(s)	392
AsuNHI	GCTAGC	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	66
BccI	CCATC	1 cut(s)	592
BciVI	GTATCC	1 cut(s)	536
BclI	TGATCA	1 cut(s)	382
BfaI	CTAG	2 cut(s)	420, 576
BfoI	RGCGCY	1 cut(s)	373
BfuAI	ACCTGC	1 cut(s)	561
BfuI	GTATCC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	536
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	212, 238
BmiI	GGNNCC	1 cut(s)	162
BmsI	GCATC	3 cut(s)	190, 212, 295
BmtI	GCTAGC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	598
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	172, 310
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	2 cut(s)	173, 279
BseSI	GKGCMC	1 cut(s)	66
BshFI	GGCC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	181, 382, 536
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	561
BspOI	GCTAGC	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	3 cut(s)	181, 382, 536
BssNAI	GTATAC	1 cut(s)	55
BssSI	CACGAG	1 cut(s)	373
BssT1I	CCWWGG	1 cut(s)	300
Bst1107I	GTATAC	1 cut(s)	55
Bst2BI	CACGAG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	172, 310
BstH2I	RGCGCY	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	3 cut(s)	184, 385, 539
BstMBI	GATC	3 cut(s)	181, 382, 536
BstSLI	GKGCMC	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	424
BstX2I	RGATCY	1 cut(s)	536
BstYI	RGATCY	1 cut(s)	536
BstZ17I	GTATAC	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	172, 310
BtsI	GCAGTG	2 cut(s)	414, 493
BtsIMutI	CAGTG	3 cut(s)	414, 493, 605
BveI	ACCTGC	1 cut(s)	561
Cac8I	GCNNGC	1 cut(s)	421
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	2 cut(s)	212, 238
CviJI	RGCY	4 cut(s)	163, 214, 423, 476
CviKI_1	RGCY	4 cut(s)	163, 214, 423, 476
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	3 cut(s)	183, 384, 538
DpnII	GATC	3 cut(s)	181, 382, 536
Eco130I	CCWWGG	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	300
FaiI	YATR	4 cut(s)	55, 84, 113, 146
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	54
FokI	GGATG	2 cut(s)	179, 317
FspBI	CTAG	2 cut(s)	420, 576
GlaI	GCGC	1 cut(s)	371
HaeII	RGCGCY	1 cut(s)	373
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	1 cut(s)	372
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	3 cut(s)	55, 64, 241
Hpy188I	TCNGA	4 cut(s)	19, 70, 133, 199
Hpy188III	TCNNGA	5 cut(s)	99, 480, 494, 540, 588
Hpy8I	GTNNAC	3 cut(s)	55, 64, 241
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	5 cut(s)	24, 64, 203, 308, 556
HpyF3I	CTNAG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	181, 382, 536
LmnI	GCTCC	1 cut(s)	160
LweI	GCATC	3 cut(s)	190, 212, 295
MaeI	CTAG	2 cut(s)	420, 576
MalI	GATC	3 cut(s)	183, 384, 538
MboI	GATC	3 cut(s)	181, 382, 536
MboII	GAAGA	6 cut(s)	185, 188, 191, 198, 331, 424
MflI	RGATCY	1 cut(s)	536
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	2 cut(s)	313, 557
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	7 cut(s)	25, 151, 225, 229, 297, 300, 320
Mph1103I	ATGCAT	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	452
MslI	CAYNNNNRTG	2 cut(s)	225, 246
MspI	CCGG	1 cut(s)	164
Mva1269I	GAATGC	1 cut(s)	26
NdeII	GATC	3 cut(s)	181, 382, 536
NheI	GCTAGC	1 cut(s)	419
NlaIV	GGNNCC	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	205
PctI	GAATGC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	452
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	212, 238
PsuI	RGATCY	1 cut(s)	536
RseI	CAYNNNNRTG	2 cut(s)	225, 246
Sau3AI	GATC	3 cut(s)	181, 382, 536
Sau96I	GGNCC	2 cut(s)	212, 238
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	5 cut(s)	240, 367, 425, 478, 555
SfaNI	GCATC	3 cut(s)	190, 212, 295
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	2 cut(s)	225, 246
Sse9I	AATT	2 cut(s)	313, 557
SspMI	CTAG	2 cut(s)	420, 576
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	52
TasI	AATT	2 cut(s)	313, 557
TscAI	CASTG	3 cut(s)	421, 493, 605
TspDTI	ATGAA	6 cut(s)	17, 128, 186, 243, 264, 445
TspRI	CASTG	3 cut(s)	421, 493, 605
VneI	GTGCAC	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	2 cut(s)	420, 576
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.